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2024-05-19 01:51:14

Gene list

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COG category: Defense mechanisms
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 66

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0073 ABC transporter, ATP-binding proteinSubName: Full=ABC-type efflux system ATPase component; chromosome CDS84765 864 + 0.508102
SO0304 conserved hypothetical proteinSubName: Full=Type II restriction endonuclease; chromosome CDS309390 963 + 0.433022
SO0524 HlyD family secretion protein chromosome CDS547338 906 + 0.525386
SO0542 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS562104 1356 - 0.471976
SO0702 MATE efflux family proteinSubName: Full=Multidrug and toxin efflux protein MATE family; chromosome CDS719084 1359 - 0.500368
SO0802 MATE efflux family proteinSubName: Full=Multidrug and toxin efflux protein MATE family; chromosome CDS814692 1362 + 0.497797
SO0821 ABC transporter, ATP-binding/permease proteinRecName: Full=Macrolide export ATP-binding/permease protein MacB; EC=3.6.3.-; chromosome CDS836192 1971 + 0.521055
SO0837 beta-lactamase, putativeSubName: Full=Class D carbapenem-hydrolyzing beta-lactamase BlaA; EC=3.5.2.6; chromosome CDS854515 798 + 0.466165
SO0856 conserved hypothetical proteinSubName: Full=ABC-type export system permease component AttFG; chromosome CDS877195 2694 - 0.491462
SO0857 ABC transporter, ATP-binding proteinSubName: Full=ABC-type export system ATPase component AttE; chromosome CDS879890 672 - 0.495536
SO0914 conserved hypothetical proteinSubName: Full=Beta lactamase family protein; chromosome CDS940407 1197 + 0.461988
SO0945 AcrB/AcrD/AcrF family proteinSubName: Full=RND superfamily efflux pump permease component; chromosome CDS977233 3204 - 0.463483
SO1293 undecaprenol kinase, putativeRecName: Full=Undecaprenyl-diphosphatase 1; EC=3.6.1.27; AltName: Full=Bacitracin resistance protein 1; AltName: Full=Undecaprenyl pyrophosphate phosphatase 1; chromosome CDS1343128 801 + 0.453184
SO1457 type I restriction-modification system, M subunit, putativeSubName: Full=Type II restriction-modification system methyltransferase; chromosome CDS1514242 2055 + 0.440876
SO1460 type I restriction-modification system, S subunit, putative chromosome CDS1518319 1341 + 0.423564
SO1506 MATE efflux family proteinSubName: Full=Na(+)-coupled multidrug efflux pump VmrA-like protein; chromosome CDS1580143 1347 + 0.487008
SO1699 transcriptional regulatorSubName: Full=Transmembrane transcriptional regulator; chromosome CDS1786612 3228 - 0.477695
SO1707 ABC transporter, permease protein, putativeSubName: Full=ABC-type drugE1 family efflux system permease component; chromosome CDS1795765 1122 + 0.509804
SO1738 conserved hypothetical proteinSubName: Full=HNH endonuclease; chromosome CDS1819077 363 + 0.46281
SO1750 ABC transporter, ATP-binding proteinSubName: Full=ABC-type transport system ATPase component; chromosome CDS1830818 879 + 0.465301
SO1865 ABC transporter, ATP-binding proteinSubName: Full=ABC-type export system ATPase component; chromosome CDS1957195 909 - 0.480748
SO1882 AcrB/AcrD/AcrF family proteinSubName: Full=HAE1 family efflux pump permease component; chromosome CDS1978320 3096 + 0.511305
SO1918 MATE efflux family proteinSubName: Full=Multidrug and toxin efflux protein MATE family; chromosome CDS2018850 1506 + 0.480744
SO1923 AcrB/AcrD/AcrF family proteinSubName: Full=RND superfamily efflux pump permease component 1; chromosome CDS2021479 3063 - 0.458048
SO1924 AcrB/AcrD/AcrF family proteinSubName: Full=RND superfamily efflux pump permease component 2; chromosome CDS2024538 3276 - 0.477411
SO2295 MATE efflux family proteinRecName: Full=Probable multidrug resistance protein NorM; AltName: Full=Multidrug-efflux transporter; chromosome CDS2407398 1380 - 0.477536
SO2388 beta-lactamaseSubName: Full=Class C beta-lactamase AmpC; EC=3.5.2.6; chromosome CDS2491006 1206 + 0.461028
SO2969 prophage LambdaSo, holin, putativeSubName: Full=Lambda phage endonuclease HNH family; chromosome CDS3102501 330 - 0.512121
SO3103 AcrB/AcrD/AcrF family proteinSubName: Full=Thiophosphate efflux pump permease component; chromosome CDS3229020 3264 + 0.476409
SO3128 ABC transporter, ATP-binding/permease protein, putativeSubName: Full=ABC-type metal export system bifunctional ATPase and permease component; chromosome CDS3256137 1830 + 0.480328
SO3279 AcrB/AcrD/AcrF family proteinSubName: Full=RND superfamily efflux pump permease component; chromosome CDS3418954 3081 + 0.488153
SO3484 AcrB/AcrD/AcrF family proteinSubName: Full=HAE1 family efflux pump permease component; chromosome CDS3631033 3141 + 0.496657
SO3603 secretion protein, HlyD family chromosome CDS3765217 1137 - 0.481091
SO3665 ABC transporter, ATP-binding/permease protein, putativeSubName: Full=ABC-type multidrug eflux system bifunctional ATPase and permease component; chromosome CDS3818216 1788 - 0.520134
SO3690 ABC transporter, permease proteinSubName: Full=ABC-type macrolide family export system permease component 1; chromosome CDS3840618 1200 - 0.465
SO3692 ABC transporter, ATP-binding proteinSubName: Full=ABC-type macrolide family export system ATPase component; chromosome CDS3843142 741 - 0.495277
SO3801 ABC transporter, permease proteinSubName: Full=ABC-type DrugE1 family export systempermease component; chromosome CDS3956063 771 - 0.460441
SO3802 ABC transporter, ATP-binding proteinSubName: Full=ABC-type DrugE1 family export system ATPase component; chromosome CDS3956830 939 - 0.469649
SO4014 AcrB/AcrD/AcrF family proteinSubName: Full=HAE1 family effllux pump permease component; chromosome CDS4157011 3072 - 0.47819
SO4051 HlyD family secretion proteinSubName: Full=Putative DUF2955 domain transport system MFP component; chromosome CDS4203978 1074 - 0.511173
SO4087 conserved hypothetical proteinSubName: Full=ABC-type efflux system permease component 2; chromosome CDS4240797 1137 - 0.496922
SO4088 conserved hypothetical proteinSubName: Full=ABC-type efflux system permease component 1; chromosome CDS4241935 1308 - 0.507645
SO4146 toxin secretion ABC transporter protein, HlyB familySubName: Full=Type I secretion system ATPase subunit HlyB family; chromosome CDS4304534 1650 + 0.467879
SO4147 ABC transporter, ATP-binding/permease proteinSubName: Full=Type I secretion system ATPase and inner membrane subunit HlyB family; chromosome CDS4306186 2085 + 0.46235
SO4274 undecaprenol kinase, putativeRecName: Full=Undecaprenyl-diphosphatase 2; EC=3.6.1.27; AltName: Full=Bacitracin resistance protein 2; AltName: Full=Undecaprenyl pyrophosphate phosphatase 2; chromosome CDS4453208 804 - 0.325871
SO4334 inner membrane protein, putative chromosome CDS4526146 1362 + 0.477239
SO4560 conserved hypothetical protein chromosome CDS4757586 792 - 0.455808
SO4692 AcrB/AcrD/AcrF family proteinSubName: Full=Proton-coupled multidrug efflux pump permease component VmeB; chromosome CDS4891476 3135 - 0.488357
SOA0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putativeSubName: Full=ABC-type bacteriocin export system multifunctional permease/ATPase/protease component; megaplasmid CDS38936 2178 - 0.443067
ampD AmpD proteinSubName: Full=N-acetyl-anhydromuramyl-L-alanine amidase AmpD; EC=3.5.1.28; chromosome CDS435462 546 + 0.465201
ampE AmpE proteinSubName: Full=AmpD signaling modulator AmpE; chromosome CDS436277 852 + 0.453052
dinF DNA-damage-inducible protein FSubName: Full=DNA damage-inducible multidrug and toxin efflux protein DinF; chromosome CDS4810765 1368 + 0.489766
hsdM-1 type I restriction-modification system, M subunit chromosome CDS397292 1758 - 0.474403
hsdM-2 type I restriction-modification system, M subunitSubName: Full=Type I restriction-modification system N6-adenine DNA methyltransferase HsdM; EC=2.1.1.72; chromosome CDS4441110 1614 - 0.490087
hsdR-1 type I restriction-modification system, R subunitSubName: Full=Type I restriction-modification system restriction endonuclease cleavage subunit HsdR; EC=3.1.21.3; chromosome CDS391526 3102 - 0.437137
hsdR-2 type I restriction-modification system, R subunitSubName: Full=Type I restriction-modification system restriction endonuclease cleavage subunit HsdR; EC=3.1.21.3; chromosome CDS4444274 3567 - 0.460331
hsdS-1 type I restriction-modification system, S subunitSubName: Full=Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS; EC=3.1.21.3; chromosome CDS395983 1320 - 0.386364
hsdS-2 type I restriction-modification system, S subunitSubName: Full=Type I restriction-modification system restriction endonuclease DNA specificity subunit HsdS; EC=3.1.21.3; chromosome CDS4439626 1488 - 0.421371
lolD lipoprotein releasing system ATP-binding protein LolD chromosome CDS2373474 693 + 0.50505
mexF RND multidrug efflux transporter MexFSubName: Full=HAE1 family efflux pump permease component MexF; chromosome CDS3639961 3144 - 0.50827
msbA ABC transporter, ATP-binding protein MsbARecName: Full=Lipid A export ATP-binding/permease protein MsbA; EC=3.6.3.-; chromosome CDS2923567 1806 - 0.471761
nosF copper ABC transporter, ATP-binding protein chromosome CDS510632 999 + 0.493493
rtxB toxin secretion ATP-binding proteinSubName: Full=Type I protein secretion system bifunctional ATPase and permease component AggC; chromosome CDS4503564 2181 + 0.449794
sapC peptide ABC transporter, permease proteinSubName: Full=ABC-type peptide uptake system permease component 2 SapC; chromosome CDS1892956 891 - 0.472503
sapD peptide ABC transporter, ATP-binding proteinSubName: Full=ABC-type peptide uptake system ATPase component 1 SapD; chromosome CDS1891945 1008 - 0.505952
sapF peptide ABC transporter, ATP-binding proteinSubName: Full=ABC-type peptide uptake system ATPase component 2 SapF; chromosome CDS1891179 786 - 0.445293