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2024-05-05 17:02:31

Gene list

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COG category: Defense mechanisms
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 66

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0073 ABC transporter, ATP-binding proteinchromosome CDS84765 864 + 0.508102
SO0304 conserved hypothetical proteinchromosome CDS309390 963 + 0.433022
SO0524 HlyD family secretion proteinchromosome CDS547338 906 + 0.525386
SO0542 conserved hypothetical proteinchromosome CDS562104 1356 - 0.471976
SO0702 MATE efflux family proteinchromosome CDS719084 1359 - 0.500368
SO0802 MATE efflux family proteinchromosome CDS814692 1362 + 0.497797
SO0821 ABC transporter, ATP-binding/permease proteinchromosome CDS836192 1971 + 0.521055
SO0837 beta-lactamase, putativechromosome CDS854515 798 + 0.466165
SO0856 conserved hypothetical proteinchromosome CDS877195 2694 - 0.491462
SO0857 ABC transporter, ATP-binding proteinchromosome CDS879890 672 - 0.495536
SO0914 conserved hypothetical proteinchromosome CDS940407 1197 + 0.461988
SO0945 AcrB/AcrD/AcrF family proteinchromosome CDS977233 3204 - 0.463483
SO1293 undecaprenol kinase, putativechromosome CDS1343128 801 + 0.453184
SO1457 type I restriction-modification system, M subunit, putativechromosome CDS1514242 2055 + 0.440876
SO1460 type I restriction-modification system, S subunit, putativechromosome CDS1518319 1341 + 0.423564
SO1506 MATE efflux family proteinchromosome CDS1580143 1347 + 0.487008
SO1699 transcriptional regulatorchromosome CDS1786612 3228 - 0.477695
SO1707 ABC transporter, permease protein, putativechromosome CDS1795765 1122 + 0.509804
SO1738 conserved hypothetical proteinchromosome CDS1819077 363 + 0.46281
SO1750 ABC transporter, ATP-binding proteinchromosome CDS1830818 879 + 0.465301
SO1865 ABC transporter, ATP-binding proteinchromosome CDS1957195 909 - 0.480748
SO1882 AcrB/AcrD/AcrF family proteinchromosome CDS1978320 3096 + 0.511305
SO1918 MATE efflux family proteinchromosome CDS2018850 1506 + 0.480744
SO1923 AcrB/AcrD/AcrF family proteinchromosome CDS2021479 3063 - 0.458048
SO1924 AcrB/AcrD/AcrF family proteinchromosome CDS2024538 3276 - 0.477411
SO2295 MATE efflux family proteinchromosome CDS2407398 1380 - 0.477536
SO2388 beta-lactamasechromosome CDS2491006 1206 + 0.461028
SO2969 prophage LambdaSo, holin, putativechromosome CDS3102501 330 - 0.512121
SO3103 AcrB/AcrD/AcrF family proteinchromosome CDS3229020 3264 + 0.476409
SO3128 ABC transporter, ATP-binding/permease protein, putativechromosome CDS3256137 1830 + 0.480328
SO3279 AcrB/AcrD/AcrF family proteinchromosome CDS3418954 3081 + 0.488153
SO3484 AcrB/AcrD/AcrF family proteinchromosome CDS3631033 3141 + 0.496657
SO3603 secretion protein, HlyD familychromosome CDS3765217 1137 - 0.481091
SO3665 ABC transporter, ATP-binding/permease protein, putativechromosome CDS3818216 1788 - 0.520134
SO3690 ABC transporter, permease proteinchromosome CDS3840618 1200 - 0.465
SO3692 ABC transporter, ATP-binding proteinchromosome CDS3843142 741 - 0.495277
SO3801 ABC transporter, permease proteinchromosome CDS3956063 771 - 0.460441
SO3802 ABC transporter, ATP-binding proteinchromosome CDS3956830 939 - 0.469649
SO4014 AcrB/AcrD/AcrF family proteinchromosome CDS4157011 3072 - 0.47819
SO4051 HlyD family secretion proteinchromosome CDS4203978 1074 - 0.511173
SO4087 conserved hypothetical proteinchromosome CDS4240797 1137 - 0.496922
SO4088 conserved hypothetical proteinchromosome CDS4241935 1308 - 0.507645
SO4146 toxin secretion ABC transporter protein, HlyB familychromosome CDS4304534 1650 + 0.467879
SO4147 ABC transporter, ATP-binding/permease proteinchromosome CDS4306186 2085 + 0.46235
SO4274 undecaprenol kinase, putativechromosome CDS4453208 804 - 0.325871
SO4334 inner membrane protein, putativechromosome CDS4526146 1362 + 0.477239
SO4560 conserved hypothetical proteinchromosome CDS4757586 792 - 0.455808
SO4692 AcrB/AcrD/AcrF family proteinchromosome CDS4891476 3135 - 0.488357
SOA0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putativemegaplasmid CDS38936 2178 - 0.443067
ampD AmpD proteinchromosome CDS435462 546 + 0.465201
ampE AmpE proteinchromosome CDS436277 852 + 0.453052
dinF DNA-damage-inducible protein Fchromosome CDS4810765 1368 + 0.489766
hsdM-1 type I restriction-modification system, M subunitchromosome CDS397292 1758 - 0.474403
hsdM-2 type I restriction-modification system, M subunitchromosome CDS4441110 1614 - 0.490087
hsdR-1 type I restriction-modification system, R subunitchromosome CDS391526 3102 - 0.437137
hsdR-2 type I restriction-modification system, R subunitchromosome CDS4444274 3567 - 0.460331
hsdS-1 type I restriction-modification system, S subunitchromosome CDS395983 1320 - 0.386364
hsdS-2 type I restriction-modification system, S subunitchromosome CDS4439626 1488 - 0.421371
lolD lipoprotein releasing system ATP-binding protein LolDchromosome CDS2373474 693 + 0.50505
mexF RND multidrug efflux transporter MexFchromosome CDS3639961 3144 - 0.50827
msbA ABC transporter, ATP-binding protein MsbAchromosome CDS2923567 1806 - 0.471761
nosF copper ABC transporter, ATP-binding proteinchromosome CDS510632 999 + 0.493493
rtxB toxin secretion ATP-binding proteinchromosome CDS4503564 2181 + 0.449794
sapC peptide ABC transporter, permease proteinchromosome CDS1892956 891 - 0.472503
sapD peptide ABC transporter, ATP-binding proteinchromosome CDS1891945 1008 - 0.505952
sapF peptide ABC transporter, ATP-binding proteinchromosome CDS1891179 786 - 0.445293