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2024-05-19 06:05:46

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 150

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis biovar Medievalis str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP0465 putative exported proteinchromosome CDS493047 3810 - 0.531759
NA YP3225 putative lipoproteinchromosome CDS3600092 528 - 0.477273
NA YP1205 putative exported proteinchromosome CDS1307917 1869 - 0.387373
NA YP3013 Fimbrial proteinchromosome CDS3352901 1107 + 0.487805
NA YP2651 putative autotransporterchromosome CDS2939632 2280 + 0.442544
NA YP3004 putative membrane proteinchromosome CDS3342401 876 - 0.332192
NA YP2301 hypothetical proteinchromosome CDS2554372 393 - 0.450382
NA YP2730 hypothetical proteinchromosome CDS3030960 294 + 0.285714
NA YP3436 putative virG proteinchromosome CDS3893867 3771 + 0.531159
NA YP2999 putative membrane proteinchromosome CDS3338210 1557 - 0.353886
NA YP3003 putative exported proteinchromosome CDS3341571 834 - 0.302158
NA YP2907 putative autotransporter proteinchromosome CDS3225395 2985 - 0.447906
NA YP3005 putative type II secretion proteinchromosome CDS3343273 1287 - 0.425796
NA YP0840 putative membrane proteinchromosome CDS912843 450 - 0.502222
NA YP3006 hypothetical proteinchromosome CDS3344571 1233 - 0.334955
NA YP3306 putative invasinchromosome CDS3693507 9327 - 0.51635
NA YP3502 Predicted ATPases involved in pili biogenesis, PilT homologschromosome CDS3987909 1131 + 0.476569
NA YP1803 Predicted outer membrane proteinchromosome CDS2000405 3807 + 0.531127
NA YP1206 putative exported proteinchromosome CDS1309785 1095 - 0.405479
ccmD YP2427 putative heme exporter protein Dchromosome CDS2697638 303 - 0.518152
clpP YP0774 ATP-dependent Clp protease proteolytic subunit ClpPchromosome CDS834343 624 + 0.461538
cpxP YP0075 putative exported proteinchromosome CDS84278 489 + 0.466258
cyaE YP2935 putative membrane proteinchromosome CDS3271234 1527 - 0.521938
ecpD1 YP1733 putative chaperone proteinchromosome CDS1917572 780 + 0.441026
ecpD2 YP2571 putative pili chaperone proteinchromosome CDS2846854 780 - 0.412821
exbB YP2997 TonB complex proteinchromosome CDS3336617 1062 + 0.520716
exbD YP2998 ExbD/TolR-family transport proteinchromosome CDS3337682 432 + 0.483796
ffh YP0389 signal recognition particle proteinchromosome CDS414079 1362 + 0.483847
fhaB1 YP2305 putative hemolysinchromosome CDS2556047 7737 - 0.57322
fhaB2 YP2919 putative adhesinchromosome CDS3242151 9888 + 0.572006
fhaB3 YP2923 Putative hemagglutinin/hemolysinchromosome CDS3253306 756 + 0.59127
fhaB4 YP3368 putative exported proteinchromosome CDS3774768 1392 - 0.383621
fhaC1 YP1887 putative hemolysin activator proteinchromosome CDS2098839 1662 + 0.367629
fhaC2 YP2306 putative hemolysin activator proteinchromosome CDS2563927 1689 - 0.539372
fhaC3 YP2918 putative hemolysin activator proteinchromosome CDS3240418 1689 + 0.541741
fhaC4 YP3367 putative hemolysin activator proteinchromosome CDS3772896 1764 - 0.459184
fimA1 YP1665 fimbrial proteinchromosome CDS1833888 531 - 0.485876
fimA2 YP1732 putative fimbrial proteinchromosome CDS1916877 543 + 0.425414
fimA3 YP1735 putative fimbrial componenetchromosome CDS1921036 1170 + 0.460684
fimA4 YP2572 putative fimbrial proteinchromosome CDS2847772 555 - 0.443243
fimA5 YP2756 putative fimbrial proteinchromosome CDS3062525 609 + 0.425287
fimA6 YP3169 putative fimbrial proteinchromosome CDS3537782 531 - 0.436911
fimA7 YP3406 fimbrial proteinchromosome CDS3820120 645 - 0.427907
fimC1 YP0460 putative fimbrial chaperonechromosome CDS486117 744 + 0.435484
fimC10 YP3403 putative fimbrial chaperonechromosome CDS3816694 828 - 0.426329
fimC2 YP1661 probable pili assembly chaperonechromosome CDS1828409 741 - 0.442645
fimC3 YP1664 probable pili assembly chaperonechromosome CDS1833151 645 - 0.424806
fimC4 YP1722 putative chaperone proteinchromosome CDS1904455 753 - 0.446215
fimC5 YP1736 putative chaperone proteinchromosome CDS1922202 804 + 0.482587
fimC6 YP3012 fimbrial chaperone proteinchromosome CDS3352157 720 + 0.488889
fimC7 YP3165 putative pilus chaperone, PapD familychromosome CDS3532165 819 - 0.482295
fimC8 YP3168 putative fimbrial chaperonechromosome CDS3536987 732 - 0.422131
fimD1 YP0459 putative outer membrane fimbrial usher proteinchromosome CDS483667 2379 + 0.461538
fimD2 YP1663 probable fimbrial usher proteinchromosome CDS1830511 2592 - 0.494985
fimD3 YP1721 probable outer membrane usher proteinchromosome CDS1901854 2448 - 0.461193
fimD4 YP1734 putative outer membrane usher proteinchromosome CDS1918433 2613 + 0.493685
fimD5 YP3167 putative outer membrane usher proteinchromosome CDS3534332 2628 - 0.471081
fimD6 YP3404 putative outer membrane usher proteinchromosome CDS3817554 636 - 0.490566
fimD7 YP3405 putative membrane proteinchromosome CDS3818215 1830 - 0.448087
fkpB YP3704 FKBP-type peptidyl-prolyl cis-trans isomerasechromosome CDS4216979 510 - 0.454902
flgM YP1596 negative regulator of flagellin synthesischromosome CDS1745745 303 + 0.475248
flgN1 YP1597 flagella synthesis protein FlgNchromosome CDS1746063 444 + 0.488739
flhA1 YP0420 putative type III secretion system componentchromosome CDS445176 2055 + 0.519221
flhA2 YP1601 flagellar biosynthesis protein FlhAchromosome CDS1751396 2079 - 0.518037
flhB1 YP0428 putative type III secretion system componentchromosome CDS452121 1071 + 0.489262
flhB2 YP1602 flagellar biosynthetic protein FlhBchromosome CDS1753474 1161 - 0.525409
flhB3 YP3018 flagellar biosynthetic protein FlhBchromosome CDS3360079 1134 - 0.446208
fliE1 YP1561 flagellar hook-basal body complex protein FliEchromosome CDS1711668 372 - 0.494624
fliE2 YP3025 flagellar hook-basal body complex protein FliEchromosome CDS3365906 381 + 0.514436
fliF1 YP0417 type III secretion system apparatus lipoproteinchromosome CDS443046 732 + 0.490437
fliF2 YP1562 flagellar M-ring proteinchromosome CDS1712332 1713 + 0.532983
fliF3 YP3026 putative flagellar M-ring proteinchromosome CDS3366296 1641 + 0.502133
fliH1 YP1564 flagellar assembly protein FliHchromosome CDS1715005 738 + 0.550135
fliH2 YP3028 flagellar assembly protein FliHchromosome CDS3368929 744 + 0.537634
fliI1 YP0421 putative type III secretion system ATP synthasechromosome CDS447214 1341 + 0.574944
fliI2 YP1565 flagellum-specific ATP synthasechromosome CDS1715681 1479 + 0.54902
fliI3 YP3029 putative flagellum-specific ATP synthasechromosome CDS3369665 1341 + 0.580164
fliJ YP1566 flagellar protein FliJchromosome CDS1717259 447 + 0.478747
fliN YP1570 flagellar motor switch protein FliNchromosome CDS1720795 417 + 0.491607
fliN1 YP0424 type III secretion system apparatus proteinchromosome CDS449309 963 + 0.54621
fliN2 YP3022 flagellar switch proteinchromosome CDS3363033 414 - 0.444444
fliP1 YP0425 putative type III secretion apparatus proteinchromosome CDS450443 606 + 0.470297
fliP2 YP1572 flagellar biosynthesis proteinchromosome CDS1721744 825 + 0.513939
fliP3 YP3021 flagellar biosynthetic protein FliPchromosome CDS3362266 771 - 0.514916
fliQ1 YP0426 putative type III secretion apparatus proteinchromosome CDS451045 294 + 0.47619
fliQ2 YP1573 flagellar biosynthetic protein FliQchromosome CDS1722674 270 + 0.522222
fliQ3 YP3020 Flagellar biosynthesis/type III secretory pathway proteinchromosome CDS3361992 273 - 0.450549
fliR1 YP0427 putative type III secretion apparatus proteinchromosome CDS451340 795 + 0.515723
fliR2 YP1574 flagellar biosynthetic protein FliRchromosome CDS1722946 783 + 0.496807
fliR3 YP3019 flagellar biosynthetic protein FliRchromosome CDS3361212 774 - 0.47416
fliS1 YP1553 flagellar protein FliSchromosome CDS1704347 399 + 0.466165
fliS2 YP3050 flagellar protein FliSchromosome CDS3388666 381 + 0.388451
ftsA1 YP0147 Predicted ATPases of the HSP70 class involved in cell divisionchromosome CDS161789 942 + 0.514862
ftsY YP3235 cell division proteinchromosome CDS3608095 1644 + 0.481752
gspD1 YP0152 putative membrane transport proteinchromosome CDS164730 1125 + 0.481778
gspD2 YP0410 possible type III secretion proteinchromosome CDS438389 1572 + 0.43257
gspD3 YP2840 putative general secretion proteinchromosome CDS3153800 1923 + 0.333333
gspE YP2841 general secretion pathway protein Echromosome CDS3155719 1512 + 0.39418
gspK YP2847 general secretion pathway protein Kchromosome CDS3160403 957 + 0.314525
gspL YP2848 general secretion pathway protein Lchromosome CDS3161343 1191 + 0.319899
hasF YP2978 ABC-transporter outer membrane componentchromosome CDS3314502 1404 - 0.47151
hmwA YP0685 putative adhesinchromosome CDS737714 5733 + 0.457701
hofB YP0258 putative integral membrane proteinchromosome CDS259708 1557 - 0.460501
hofC YP0257 putative type II secretion system proteinchromosome CDS258512 1200 - 0.455
hofF YP2842 putative general protein secretion proteinchromosome CDS3157211 1209 + 0.339123
hofG1 YP2843 general secretion pathway protein Gchromosome CDS3158439 438 + 0.394977
hofG2 YP2844 General secretory pathway proteins G and H and related periplasmic/secreted proteinschromosome CDS3158833 591 + 0.338409
hofG3 YP2845 general secretion pathway protein Ichromosome CDS3159461 345 + 0.342029
hofG4 YP2846 general secretion pathway protein Jchromosome CDS3159777 618 + 0.312298
hofG5 YP2877 putative prepilin peptidase dependent proteinchromosome CDS3191477 570 + 0.461404
hofG6 YP2878 putative prepilin peptidase dependent proteinchromosome CDS3192037 609 + 0.486043
hxuB YP0684 putative surface-exposed proteinchromosome CDS735883 1791 + 0.455053
hylA YP3083 hemolysinchromosome CDS3418721 4965 + 0.444914
ibeB YP0602 probable outer membrane efflux lipoproteinchromosome CDS645479 1407 + 0.510306
lepB YP2521 signal peptidase Ichromosome CDS2792816 999 + 0.49049
marC1 YP1978 putative membrane proteinchromosome CDS2201955 645 + 0.452713
marC2 YP2225 multiple antibiotic resistance proteinchromosome CDS2473592 684 + 0.438596
marC3 YP3312 putative membrane proteinchromosome CDS3707398 585 + 0.466667
nrfG5 YP3002 TPR-repeat-containing proteinschromosome CDS3340817 771 - 0.35668
ogl YP1738 oligogalacturonate lyasechromosome CDS1924753 1167 + 0.459297
pilF YP2747 putative fimbrial biogenesis proteinchromosome CDS3048096 750 - 0.492
ppdD YP0259 putative prepilin peptidase dependent protein D precursorchromosome CDS261239 465 - 0.447312
pppA1 YP2850 putative type IV prepilin peptidasechromosome CDS3162945 915 + 0.357377
pppA2 YP3009 putative membrane proteinchromosome CDS3348229 423 - 0.385343
psaB YP1288 chaperone protein PsaB precursorchromosome CDS1409882 822 - 0.377129
psaC YP1287 outer membrane usher protein PsaC precursorchromosome CDS1407327 2514 - 0.492045
secA YP3620 preprotein translocase SecAchromosome CDS4115621 2715 - 0.48582
secB YP0067 protein-export proteinchromosome CDS77538 477 + 0.484277
secD1 YP0742 protein-export membrane protein SecDchromosome CDS803386 1848 + 0.487554
secE YP3116 preprotein translocase SecE subunitchromosome CDS3469127 399 - 0.486216
secF YP0743 protein-export membrane protein SecFchromosome CDS805178 1035 + 0.476328
secG YP0584 protein-export membrane proteinchromosome CDS624044 336 + 0.482143
secY YP0227 preprotein translocase SecY subunitchromosome CDS229559 1332 + 0.459459
smf YP0241 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS240302 1122 + 0.486631
smfA YP2404 putative mannose-resistant/Proteus-like fimbrialproteinchromosome CDS2672900 531 - 0.463277
sohB YP2013 peptidase family U7 proteinchromosome CDS2235047 1047 + 0.483286
sppA YP1962 protease IVchromosome CDS2180303 1851 - 0.480821
tatA YP3271 Sec-independent protein translocase protein TatAchromosome CDS3648555 267 + 0.438202
tatB YP3272 Sec-independent protein translocase protein TatBchromosome CDS3648825 663 + 0.505279
tatC YP3273 Sec-independent protein translocase protein TatCchromosome CDS3649490 777 + 0.449163
tatE YP1117 sec-independent protein translocase proteinchromosome CDS1200054 258 - 0.465116
tolB YP1032 TolB colicin import proteinchromosome CDS1111424 1293 - 0.4942
tolQ YP1035 TolQ colicin import proteinchromosome CDS1114579 687 - 0.487627
tolR YP1034 TolR colicin import membrane proteinchromosome CDS1114138 429 - 0.468531
yajC YP0741 putative membrane proteinchromosome CDS802957 402 + 0.427861
yapC YP1153 putaive autotransporter proteinchromosome CDS1238299 1917 + 0.47157
yapE YP3347 putative autotransporter proteinchromosome CDS3744350 3255 - 0.488786
yapF YP2924 putative autotransporter proteinchromosome CDS3254557 2286 - 0.546807
yapH YP3415 putative autotransporter proteinchromosome CDS3835208 11133 + 0.528788
yidC YP4009 probable membrane proteinchromosome CDS4562278 1641 + 0.481414