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2024-05-19 08:41:16

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 161

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Hahella chejuensis KCTC 2396, KCTC 2396
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA HCH_00063 hypothetical proteinchromosome CDS66301 387 - 0.54522
NA HCH_06933 Tfp pilus assembly protein, major pilin PilAchromosome CDS7048892 486 + 0.547325
NA HCH_04915 Periplasmic component of the Tol biopolymer transport systemchromosome CDS5048986 1293 - 0.507347
NA HCH_06749 conserved hypothetical proteinchromosome CDS6865961 1149 - 0.45866
NA HCH_04723 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS4850897 759 - 0.524374
NA HCH_02701 Biopolymer transport proteinchromosome CDS2771699 420 + 0.514286
NA HCH_03263 Type III secretory pathway, component EscRchromosome CDS3359148 648 - 0.535494
NA HCH_03261 Type III secretory pathway, component EscTchromosome CDS3357989 786 - 0.547074
NA HCH_06352 Tfp pilus assembly protein, pilus retraction ATPase PilTchromosome CDS6491754 1035 - 0.551691
NA HCH_06148 Type II secretory pathway, component PulFchromosome CDS6293050 1230 - 0.58374
NA HCH_04133 Outer membrane proteinchromosome CDS4276138 1407 - 0.584933
NA HCH_06152 Type II secretory pathway, component ExeA (predicted ATPase)chromosome CDS6297312 849 - 0.578327
NA HCH_00231 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS245276 2238 + 0.544683
NA HCH_05017 Tfp pilus assembly protein, ATPase PilUchromosome CDS5162967 1215 + 0.563786
NA HCH_05122 Type III secretory pathway, lipoprotein EscJchromosome CDS5275610 756 - 0.53836
NA HCH_03273 Type III secretory pathway, component EscVchromosome CDS3367207 2091 - 0.582975
NA HCH_03262 Type III secretory pathway, component EscSchromosome CDS3358811 270 - 0.603704
NA HCH_05966 uncharacterized protein conserved in bacteriachromosome CDS6100999 1629 - 0.543278
NA HCH_06140 conserved hypothetical proteinchromosome CDS6284657 5040 - 0.584722
NA HCH_03268 Flagellar biosynthesis/type III secretory pathway ATPasechromosome CDS3362112 1347 - 0.626578
NA HCH_01420 hypothetical proteinchromosome CDS1423885 954 + 0.562893
NA HCH_02896 Periplasmic serine protease (ClpP class)chromosome CDS2975180 1284 + 0.561526
NA HCH_06149 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS6294282 1737 - 0.590098
NA HCH_04610 Type II secretory pathway, component PulDchromosome CDS4733199 1944 - 0.545267
NA HCH_01701 Multiple antibiotic transporterchromosome CDS1727894 609 - 0.486043
NA HCH_05996 Outer membrane proteinchromosome CDS6131812 1329 + 0.565087
NA HCH_05279 Type II secretory pathway, component PulFchromosome CDS5421618 1221 + 0.451269
NA HCH_03291 conserved hypothetical proteinchromosome CDS3381515 1149 + 0.48738
NA HCH_04366 Heme exporter protein Dchromosome CDS4511434 180 - 0.527778
NA HCH_05119 Flagellar biosynthesis/type III secretory pathway proteinchromosome CDS5274325 627 - 0.558214
NA HCH_06822 Large exoprotein involved in heme utilization or adhesionchromosome CDS6932172 2232 - 0.549731
NA HCH_03155 conserved hypothetical proteinchromosome CDS3243980 1590 - 0.562264
NA HCH_03682 hypothetical proteinchromosome CDS3824951 930 - 0.583871
NA HCH_04919 Biopolymer transport proteinchromosome CDS5051750 684 - 0.538012
NA HCH_03556 hypothetical proteinchromosome CDS3703200 483 - 0.573499
NA HCH_01853 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS1884432 1785 - 0.568627
NA HCH_05131 Type II secretory pathway, component PulDchromosome CDS5279083 1848 - 0.5671
NA HCH_02633 Biopolymer transport proteinchromosome CDS2701549 498 + 0.502008
NA HCH_03260 Type III secretory pathway, component EscUchromosome CDS3356886 1038 - 0.535645
NA HCH_10022 Tfp pilus assembly protein FimTchromosome CDS6056993 534 + 0.426966
NA HCH_05278 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS5419902 1713 + 0.473438
NA HCH_06144 Type II secretory pathway, pseudopilin PulGchromosome CDS6291383 522 - 0.591954
NA HCH_02534 Periplasmic serine protease (ClpP class)chromosome CDS2598367 1038 + 0.515414
NA HCH_06066 conserved hypothetical proteinchromosome CDS6209058 993 + 0.537764
NA HCH_05276 Tfp pilus assembly protein, major pilin PilAchromosome CDS5418604 447 - 0.465324
NA HCH_01438 conserved hypothetical proteinchromosome CDS1439317 450 + 0.5
NA HCH_06175 OEP (Outer membrane Efflux Protein) family proteinchromosome CDS6314659 1368 + 0.596491
NA HCH_03938 hypothetical proteinchromosome CDS4079728 876 + 0.562785
NA HCH_00032 predicted Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS37519 1170 + 0.562393
NA HCH_00006 Multiple antibiotic transporterchromosome CDS4479 603 + 0.485904
NA HCH_06932 probable pilus-assembl protein PilCchromosome CDS7047887 981 + 0.539246
NA HCH_00941 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS935073 1257 + 0.541766
NA HCH_01213 Outer membrane proteinchromosome CDS1223553 1437 + 0.588031
NA HCH_06153 Type II secretory pathway, component PulDchromosome CDS6298179 1686 - 0.587189
NA HCH_02700 Biopolymer transport proteinchromosome CDS2771067 636 + 0.528302
NA HCH_04722 putative flagella synthesis protein FlgNchromosome CDS4850312 465 + 0.522581
NA HCH_02138 Periplasmic serine protease (ClpP class)chromosome CDS2190740 990 + 0.492929
NA HCH_06889 conserved hypothetical proteinchromosome CDS6998086 1623 - 0.470733
NA HCH_06146 Type II secretory pathway, pseudopilin PulGchromosome CDS6291935 459 - 0.54902
NA HCH_05277 Tfp pilus assembly protein, major pilin PilAchromosome CDS5419112 474 - 0.474684
NA HCH_02652 Type II secretory pathway, component ExeA (predicted ATPase)chromosome CDS2718202 1803 + 0.562396
NA HCH_03247 Type III secretory pathway, lipoprotein EscJchromosome CDS3343815 798 + 0.567669
NA HCH_06892 conserved hypothetical proteinchromosome CDS7001997 1479 - 0.509128
NA HCH_03240 putative type III secretion protein YscCchromosome CDS3339322 1722 + 0.559233
NA HCH_10004 predicted Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS6532671 702 + 0.492877
NA HCH_05101 Type III secretory pathway, component EscVchromosome CDS5257947 2073 - 0.565364
NA HCH_06940 Outer membrane proteinchromosome CDS7054714 1443 - 0.61885
NA HCH_03264 Flagellar motor switch/type III secretory pathway proteinchromosome CDS3359782 1194 - 0.582077
NA HCH_07087 Preprotein translocase subunit YidCchromosome CDS7212222 1713 - 0.455342
NA HCH_04646 conserved hypothetical proteinchromosome CDS4772449 1494 + 0.484605
NA HCH_02173 hypothetical proteinchromosome CDS2225326 531 - 0.418079
NA HCH_04458 Tfp pilus assembly protein PilFchromosome CDS4588264 546 - 0.467033
NA HCH_06976 Biopolymer transport proteinchromosome CDS7090617 381 + 0.480315
NA HCH_06893 conserved hypothetical proteinchromosome CDS7003918 1494 - 0.507363
NA HCH_05280 Type II secretory pathway, prepilin signal peptidase PulO and related peptidasechromosome CDS5422905 879 + 0.483504
NA HCH_05669 Periplasmic serine protease (ClpP class)chromosome CDS5788998 1224 - 0.644608
NA HCH_06516 conserved hypothetical proteinchromosome CDS6640857 1731 + 0.583478
NA HCH_02433 protein containing tetratricopeptide repeatschromosome CDS2485721 3039 + 0.558736
NA HCH_06351 Tfp pilus assembly protein, ATPase PilUchromosome CDS6490564 1128 - 0.556738
NA HCH_03018 Outer membrane proteinchromosome CDS3116748 1281 + 0.612022
NA HCH_04884 Multiple antibiotic transporterchromosome CDS5020448 636 + 0.540881
NA HCH_04307 predicted metal-binding protein related to the C-terminal domain of SecAchromosome CDS4453142 768 - 0.541667
NA HCH_06975 Biopolymer transport proteinchromosome CDS7090172 438 + 0.591324
NA HCH_03194 uncharacterized protein with a C-terminal OMP (outer membrane protein) domainchromosome CDS3284433 6675 + 0.594607
NA HCH_03249 Flagellar biosynthesis/type III secretory pathway proteinchromosome CDS3345318 630 + 0.544444
NA HCH_02631 Biopolymer transport proteinchromosome CDS2700365 666 + 0.478979
NA HCH_06894 conserved hypothetical proteinchromosome CDS7005848 1458 - 0.505487
NA HCH_02594 conserved hypothetical proteinchromosome CDS2663089 2706 + 0.546194
NA HCH_05926 Tfp pilus assembly protein PilEchromosome CDS6057573 435 - 0.526437
NA HCH_03379 Hemolysin activation/secretion proteinchromosome CDS3467634 1770 - 0.570056
NA HCH_00903 conserved hypothetical proteinchromosome CDS903838 789 - 0.574144
NA HCH_04667 conserved hypothetical proteinchromosome CDS4794241 927 - 0.563107
NA HCH_03698 conserved hypothetical proteinchromosome CDS3841987 1242 - 0.528986
NA HCH_03375 Large exoprotein involved in heme utilization or adhesionchromosome CDS3459786 2814 - 0.561123
NA HCH_06890 conserved hypothetical proteinchromosome CDS7000111 1155 - 0.494372
NA HCH_04917 Biopolymer transport proteinchromosome CDS5051312 423 - 0.550827
NA HCH_04721 Negative regulator of flagellin synthesis (anti-sigma28 factor)chromosome CDS4849979 315 + 0.511111
clpP1 HCH_02158 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS2210558 642 + 0.493769
clpP2 HCH_02373 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS2428955 585 + 0.526496
ffh HCH_01771 signal recognition particle proteinchromosome CDS1795612 1383 + 0.509038
fimT HCH_10023 Tfp pilus assembly protein FimTchromosome CDS6064580 486 - 0.495885
flhA1 HCH_04087 Flagellar biosynthesis pathway, component FlhAchromosome CDS4236647 2094 - 0.486151
flhA2 HCH_05174 Flagellar biosynthesis pathway, component FlhAchromosome CDS5321863 2169 - 0.585984
flhB1 HCH_04088 Flagellar biosynthesis pathway, component FlhBchromosome CDS4238737 1029 - 0.493683
flhB2 HCH_05175 Flagellar biosynthesis pathway, component FlhBchromosome CDS5324140 1137 - 0.574318
fliE1 HCH_04079 flagellar hook-basal body complex protein (FliE)chromosome CDS4231321 297 - 0.481481
fliE2 HCH_05195 flagellar hook-basal body complex protein (FliE)chromosome CDS5339645 357 - 0.577031
fliF1 HCH_04078 flagellar M-ring protein FliFchromosome CDS4229915 1389 - 0.4982
fliF2 HCH_05194 flagellar M-ring protein FliFchromosome CDS5337878 1719 - 0.596859
fliH1 HCH_04076 putative flagellar assembly proteinchromosome CDS4228655 795 - 0.499371
fliH2 HCH_05191 putative flagellar assembly proteinchromosome CDS5335899 921 - 0.568947
fliI1 HCH_04075 flagellum-specific ATP synthasechromosome CDS4227306 1251 - 0.509193
fliI2 HCH_05190 flagellum-specific ATP synthasechromosome CDS5334542 1371 - 0.617797
fliJ HCH_05189 Flagellar biosynthesis chaperonechromosome CDS5334063 453 - 0.512141
fliN1 HCH_04069 flagellar motor switch proteinchromosome CDS4222587 336 - 0.470238
fliN2 HCH_05180 flagellar motor switch proteinchromosome CDS5327677 519 - 0.583815
fliP1 HCH_04067 flagellar biosynthetic protein FliPchromosome CDS4221300 732 - 0.465847
fliP2 HCH_05178 flagellar biosynthetic protein FliPchromosome CDS5326453 762 - 0.552493
fliQ1 HCH_04091 flagellar biosynthetic protein FliQchromosome CDS4240631 267 - 0.460674
fliQ2 HCH_05177 flagellar biosynthetic protein FliQchromosome CDS5326159 270 - 0.551852
fliR1 HCH_04089 Flagellar biosynthesis pathway, component FliRchromosome CDS4239857 681 - 0.502203
fliR2 HCH_05176 Flagellar biosynthesis pathway, component FliRchromosome CDS5325362 786 - 0.55598
fliS HCH_04817 flagellar protein FliSchromosome CDS4957502 396 - 0.520202
ftsY HCH_00572 signal recognition particle-docking protein FtsYchromosome CDS582946 1131 + 0.559682
gspC HCH_04611 general secretion pathway protein Cchromosome CDS4735206 837 - 0.553166
gspE HCH_03937 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilBchromosome CDS4077864 1557 - 0.528581
gspF HCH_03936 general secretion pathway protein Fchromosome CDS4076553 1227 - 0.550122
gspG HCH_03935 general secretion pathway protein Gchromosome CDS4076062 450 - 0.508889
gspI HCH_03932 general secretion pathway protein Ichromosome CDS4075065 414 - 0.531401
gspJ HCH_03931 general secretion pathway protein Jchromosome CDS4074241 825 - 0.529697
gspK HCH_03930 Type II secretory pathway, component PulKchromosome CDS4073211 1038 - 0.49422
gspL HCH_03929 Type II secretory pathway, component PulLchromosome CDS4071855 1290 - 0.564341
gspM HCH_03928 Type II secretory pathway, component PulMchromosome CDS4071327 525 - 0.55619
lepB HCH_01798 signal peptidase Ichromosome CDS1822061 768 + 0.481771
lspA HCH_05932 lipoprotein signal peptidasechromosome CDS6066650 540 - 0.507407
pilE HCH_06797 Tfp pilus assembly protein, major pilin PilAchromosome CDS6909401 1629 - 0.564764
pilM HCH_05972 Tfp pilus assembly protein, ATPase PilMchromosome CDS6108335 1065 - 0.504225
pilN HCH_05971 Tfp pilus assembly protein PilNchromosome CDS6107769 567 - 0.453263
pilO HCH_05970 Tfp pilus assembly protein PilOchromosome CDS6107153 615 - 0.414634
pilP HCH_10024 Tfp pilus assembly protein PilPchromosome CDS6106611 543 - 0.458564
pilQ HCH_05969 type 4 fimbrial biogenesis protein PilQchromosome CDS6104404 2163 - 0.44614
pilW HCH_05929 Tfp pilus assembly protein PilWchromosome CDS6063086 963 - 0.398754
pilY1 HCH_05927 Tfp pilus assembly protein, tip-associated adhesin PilY1chromosome CDS6058012 4317 - 0.470002
pilZ HCH_02415 Tfp pilus assembly protein PilZchromosome CDS2469363 351 + 0.509971
secA HCH_05873 preprotein translocase, SecA subunitchromosome CDS5991935 2727 - 0.512651
secB HCH_01356 protein-export protein SecBchromosome CDS1366088 480 + 0.54375
secD HCH_04467 protein-export membrane protein SecDchromosome CDS4596462 1863 - 0.528717
secE HCH_06230 preprotein translocase, SecE subunitchromosome CDS6361555 375 - 0.490667
secF HCH_04466 protein-export membrane protein SecFchromosome CDS4595526 924 - 0.503247
secG HCH_01236 preprotein translocase, SecG subunitchromosome CDS1248957 399 + 0.45614
secY HCH_06197 Preprotein translocase subunit SecYchromosome CDS6335030 1332 - 0.465465
tatA HCH_01076 Sec-independent protein secretion pathway componentschromosome CDS1077162 243 - 0.489712
tatB HCH_01075 twin-arginine translocation protein TatBchromosome CDS1076727 411 - 0.576642
tatC HCH_01074 Sec-independent protein translocase TatCchromosome CDS1075961 765 - 0.535948
yajC HCH_04468 preprotein translocase, YajC subunitchromosome CDS4598435 369 - 0.523035
yscN HCH_05107 putative Yops secretion ATP synthase YscNchromosome CDS5262704 1320 + 0.62803
yscQ HCH_05110 putative type III secretion protein YscQchromosome CDS5268004 957 + 0.630094
yscR HCH_05111 Type III secretory pathway, component EscRchromosome CDS5268953 648 + 0.532407
yscS HCH_05112 Type III secretory pathway, component EscSchromosome CDS5269597 273 + 0.549451
yscT HCH_05113 Type III secretory pathway, component EscTchromosome CDS5269866 789 + 0.564005
yscU HCH_05114 Type III secretory pathway, component EscUchromosome CDS5270658 1056 + 0.520833