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2024-05-18 02:17:18

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 116

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas putida KT2440, KT2440
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PP3045 ClpP protease, putativechromosome CDS3429780 1164 + 0.610825
NA PP0805 outer membrane efflux proteinchromosome CDS925187 1437 - 0.679193
NA PP2558 outer membrane efflux protein, putativechromosome CDS2906021 1359 - 0.635762
NA PP0806 surface adhesion protein, putativechromosome CDS926687 18933 - 0.663762
NA PP3478 secretion protein, putativechromosome CDS3942024 1866 - 0.647374
NA PP1273 multidrug efflux MFS outer membrane protein, putativechromosome CDS1454465 1455 + 0.658419
NA PP1908 peptidase, putativechromosome CDS2152955 990 + 0.618182
NA PP4211 ABC export system, outer membrane proteinchromosome CDS4756728 1413 + 0.665251
NA PP1898 MotA/TolQ/ExbB proton channel family proteinchromosome CDS2142547 675 + 0.613333
NA PP1798 outer membrane efflux proteinchromosome CDS2020045 1416 + 0.596751
NA PP0575 conserved hypothetical proteinchromosome CDS673636 471 - 0.613588
NA PP1993 conserved hypothetical proteinchromosome CDS2259410 2736 + 0.656433
NA PP4115 conserved hypothetical proteinchromosome CDS4652226 804 + 0.598259
NA PP2408 cobalt-zinc-cadmium resistance protein CzcC, putativechromosome CDS2751171 1278 + 0.673709
NA PP3783 conserved hypothetical proteinchromosome CDS4310287 936 + 0.595085
NA PP5385 heavy metal RND efflux outer membrane protein, CzcC familychromosome CDS6137536 1254 + 0.638756
NA PP4396 conserved hypothetical proteinchromosome CDS4987038 468 + 0.613248
NA PP2069 multidrug efflux MFS outer membrane protein, putativechromosome CDS2354586 1422 - 0.675106
NA PP1201 conserved hypothetical proteinchromosome CDS1376338 1293 - 0.643465
NA PP1263 fusaric acid resistance protein, putativechromosome CDS1444375 1530 + 0.655556
NA PP4825 membrane protein, MarC familychromosome CDS5489516 597 + 0.60804
NA PP1899 ExbD/TolR family proteinchromosome CDS2143218 435 + 0.648276
NA PP0715 outer membrane efflux proteinchromosome CDS830725 1515 + 0.653465
NA PP0607 type IV pili biogenesis protein FimT, putativechromosome CDS715009 483 - 0.623188
NA PP3476 secretion protein, putativechromosome CDS3941168 387 - 0.638243
NA PP5081 type IV pili biogenesis proteinchromosome CDS5802772 1017 - 0.647984
NA PP4833 SURF1 domain proteinchromosome CDS5500074 432 + 0.641204
NA PP2857 conserved hypothetical proteinchromosome CDS3260238 579 - 0.61658
NA PP3582 RND efflux transporter, outer membrane proteinchromosome CDS4064466 1491 - 0.647217
NA PP3878 phage minor capsid protein C, putativechromosome CDS4398916 972 - 0.599794
NA PP1040 Sec-independent protein translocase TatB, putativechromosome CDS1189808 291 - 0.67354
NA PP1449 surface colonization protein, putativechromosome CDS1652238 4527 - 0.636183
NA PP3267 clp protease, putativechromosome CDS3701568 597 + 0.571189
NA PP5083 type IV pili biogenesis protein PilM, putativechromosome CDS5804318 882 - 0.642857
NA PP4923 outer membrane efflux proteinchromosome CDS5596495 1434 + 0.628312
NA PP3069 outer membrane autotransporterchromosome CDS3450966 2478 - 0.66021
NA PP3398 curli fiber surface-exposed nucleator CsgB, putativechromosome CDS3850516 474 + 0.630802
NA PP1890 type 1 pili chaperone protein FimCchromosome CDS2132229 780 - 0.546154
NA PP4057 outer membrane autotransporter barrel domain proteinchromosome CDS4576619 1170 + 0.622222
NA PP3448 bacteriophage receptor protein, putativechromosome CDS3905513 2175 + 0.625287
NA PP5190 type II secretion system proteinchromosome CDS5919406 1674 + 0.664875
NA PP0573 hypothetical proteinchromosome CDS670944 1725 + 0.64058
NA PP3299 outer membrane lipoproteinchromosome CDS3731774 1464 - 0.584016
NA PP3483 type II secretion system protein, putativechromosome CDS3946249 1797 - 0.648303
NA PP1114 SEC-C domain proteinchromosome CDS1273375 198 - 0.621212
NA PP3922 sohB protein, peptidase U7 familychromosome CDS4427744 1020 - 0.603922
NA PP5077 conserved hypothetical proteinchromosome CDS5798264 1590 - 0.637736
NA PP1888 fimbrial proteinchromosome CDS2128549 1095 - 0.6
NA PP1450 activation/secretion protein, TPS family, putativechromosome CDS1656792 1698 - 0.661955
NA PP1880 outer membrane autotransporterchromosome CDS2104921 2193 - 0.642955
PP0045 cobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC familychromosome CDS50718 1272 - 0.601415
PP0069 smf proteinchromosome CDS79246 1098 + 0.661202
PP0168 surface adhesion protein, putativechromosome CDS194494 26049 + 0.610273
PP0179 efflux transporter, outer membrane protein, putativechromosome CDS230339 1419 + 0.650458
ccmD PP4324 cytochrome c-type biogenesis protein CcmDchromosome CDS4915146 177 - 0.621469
clpP PP2300 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS2628336 642 + 0.604361
csuC PP2361 type 1 pili usher pathway chaperone CsuCchromosome CDS2692900 795 + 0.661635
csuD PP2362 type 1 pili usher protein CsuDchromosome CDS2693707 2394 + 0.63868
exbB PP5306 ferric siderophore transport system protein ExbBchromosome CDS6053648 963 + 0.646937
exbD PP5307 ferric siderophore transport system, inner membrane protein ExbDchromosome CDS6054614 429 + 0.587413
ffh PP1461 signal recognition particle protein Ffhchromosome CDS1666755 1617 + 0.627087
fimD PP1889 type 1 pili subunit FimDchromosome CDS2129700 2496 - 0.629006
fimI PP1891 type 1 pili subunit FimIchromosome CDS2133062 540 - 0.559259
flgM PP4395 negative regulator of flagellin synthesis FlgMchromosome CDS4986674 315 + 0.638095
flhA PP4344 flagellar biosynthetic protein FlhAchromosome CDS4934459 2130 - 0.623474
flhB PP4352 flagellar biosynthetic protein FlhBchromosome CDS4945437 1143 - 0.618548
fliE PP4370 flagellar hook-basal body complex protein FliEchromosome CDS4960485 333 - 0.600601
fliF PP4369 flagellar basal-body M-ring protein FliFchromosome CDS4958691 1779 - 0.653176
fliH PP4367 flagellar assembly protein FliHchromosome CDS4956725 792 - 0.633838
fliI PP4366 flagellum-specific ATP synthase FliIchromosome CDS4955380 1374 - 0.648472
fliJ PP4365 flagellar protein FliJchromosome CDS4954921 453 - 0.655629
fliN PP4357 flagellar motor switch protein FliNchromosome CDS4948859 486 - 0.623457
fliP PP4355 flagellar biosynthetic protein FliPchromosome CDS4947657 756 - 0.624339
fliQ PP4354 flagellar biosynthetic protein FliQchromosome CDS4947366 270 - 0.603704
fliR PP4353 flagellar biosynthetic protein FliRchromosome CDS4946582 777 - 0.612613
fliS PP4375 flagellar biosynthetis protein FliSchromosome CDS4965839 396 - 0.583333
ftsY PP5111 signal recognition particle receptor FtsYchromosome CDS5830650 1485 - 0.658586
lepB PP1432 signal peptidase Ichromosome CDS1633048 855 + 0.60117
lspA PP0604 lipoprotein signal peptidasechromosome CDS713010 531 + 0.627119
oprJ PP2819 outer membrane protein OprJchromosome CDS3217208 1407 + 0.683013
oprN PP3427 multidrug efflux RND outer membrane protein OprNchromosome CDS3881339 1416 + 0.67161
pilA PP0634 type IV pili prepilin PilAchromosome CDS740841 411 + 0.644769
pilC PP0633 type IV pili biogenesis protein PilCchromosome CDS739416 1209 - 0.652605
pilD PP0632 type IV pili prepilin peptidase PilD/XcpAchromosome CDS738547 867 - 0.629758
pilE PP0611 type IV pili biogenesis protein PilEchromosome CDS716887 390 + 0.646154
pilF PP0851 type IV pili biogenesis protein PilFchromosome CDS985237 768 + 0.608073
pilN PP5082 type IV pili biogenesis protein PilNchromosome CDS5803785 537 - 0.635009
pilQ PP5080 type IV pili biogenesis protein PilQchromosome CDS5801586 1263 - 0.607284
pilT PP5093 type IV pili twitching motility protein PilTchromosome CDS5816934 1011 - 0.657765
secA PP1345 preprotein translocase, SecA subunitchromosome CDS1531986 2820 + 0.603546
secB PP5053 protein-transport protein SecBchromosome CDS5759538 486 - 0.59465
secD PP0835 protein-export membrane protein SecDchromosome CDS971707 1863 + 0.6146
secE preprotein translocase, SecE subunitchromosome CDS534102 369 + 0.558266
secF PP0836 protein-export membrane protein SecFchromosome CDS973580 909 + 0.59516
secY Sec-dependent secretion protein SecYchromosome CDS559885 1332 + 0.559309
tatA-1 PP1041 Sec-independent protein translocase TatAchromosome CDS1190098 234 - 0.598291
tatA-2 PP5016 Sec-independent protein translocase TatAchromosome CDS5715049 273 + 0.622711
tatB PP5017 Sec-independent protein translocase TatBchromosome CDS5715325 378 + 0.671958
tatC-1 PP1039 Sec-independent periplasmic protein translocator TatCchromosome CDS1189050 762 - 0.61811
tatC-2 PP5018 Sec-independent periplasmic protein translocator TatCchromosome CDS5715699 789 + 0.599493
tolB PP1222 tolB proteinchromosome CDS1398166 1302 + 0.599846
tolC PP4519 agglutination proteinchromosome CDS5132917 1359 + 0.61663
tolQ PP1219 biopolymer transport protein TolQchromosome CDS1395889 696 + 0.627874
tolR PP1220 biopolymer transport protein TolRchromosome CDS1396599 453 + 0.598234
ttgC PP1384 multidrug/solvent RND outer membrane protein TtgCchromosome CDS1576789 1455 - 0.642612
xcpQ PP1046 type II secretion pathway protein XcpQchromosome CDS1195938 1755 + 0.646724
xcpR PP1047 type II secretion pathway protein XcpRchromosome CDS1197689 1452 + 0.662534
xcpS-1 PP1048 type II secretion pathway protein XcpSchromosome CDS1199144 1203 + 0.67581
xcpS-2 PP3424 type II secretion pathway protein XcpSchromosome CDS3875506 1212 + 0.668317
xcpT-1 PP1049 type II secretion pathway protein XcpTchromosome CDS1200343 456 + 0.638158
xcpT-2 PP3423 type II secretion pathway protein XcpTchromosome CDS3875006 510 + 0.645098
xcpU PP1050 type II secretion pathway protein XcpUchromosome CDS1200802 432 + 0.710648
xcpW PP1052 type II secretion pathway protein XcpWchromosome CDS1201595 591 + 0.671743
xcpX PP1042 type II secretion pathway protein XcpXchromosome CDS1190477 966 + 0.663561
yajC PP0834 preprotein translocase, YajC subunitchromosome CDS971308 336 + 0.583333
yidC inner membrane protein, 60 kDachromosome CDS6471 1683 - 0.585859