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2024-05-19 00:13:05

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome 1

Number of genes found: 110

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Photobacterium profundum, ss9
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PBPRA0028 Hypothetical flagellar proteinchromosome 1 CDS28830 282 - 0.41844
NA PBPRA1140 hypothetical proteinchromosome 1 CDS1267251 10200 + 0.423824
NA PBPRA0026 Hypothetical proteinchromosome 1 CDS27987 339 + 0.454277
NA PBPRA1792 hypothetical proteinchromosome 1 CDS2062581 375 - 0.370667
NA PBPRA2504 hypothetical proteinchromosome 1 CDS2899121 1485 + 0.444444
NA PBPRA2495 Hypothetical proteinchromosome 1 CDS2890273 855 + 0.464327
NA PBPRA3473 hypothetical general secretion pathway protein Lchromosome 1 CDS3926523 1347 - 0.446177
NA PBPRA2498 hypothetical proteinchromosome 1 CDS2893017 1266 + 0.42812
NA PBPRA1736 hypothetical proteinchromosome 1 CDS1991734 918 + 0.375817
NA PBPRA1772 hypothetical proteinchromosome 1 CDS2042566 2061 + 0.415818
NA PBPRA1948 Hypothetical proteinchromosome 1 CDS2246469 321 + 0.299065
NA PBPRA1986 Conserved hypothetical proteinchromosome 1 CDS2281263 903 - 0.397564
NA PBPRA2502 Hypothetical proteinchromosome 1 CDS2897306 762 + 0.446194
NA PBPRA2654 hypothetical proteinchromosome 1 CDS3072634 4227 - 0.415188
NA PBPRA0701 conserved hypothetical proteinchromosome 1 CDS776802 657 + 0.401826
BA4092 PBPRA1356 hypothetical protease/scaffold proteinchromosome 1 CDS1526357 804 + 0.5
BB2576 PBPRA0014 Hypothetical flagellar biosynthetic protein FliRchromosome 1 CDS16740 780 - 0.497436
BBP399 PBPRA0150 putative membrane proteinchromosome 1 CDS151996 594 + 0.447811
BR1098 PBPRA3396 putative Multiple antibiotic transporterchromosome 1 CDS3842879 633 + 0.459716
C0518 PBPRA0745 putative protein-export membrane protein SecDchromosome 1 CDS825371 1854 + 0.459547
C3699 PBPRA3472 putative general secretion pathway protein Mchromosome 1 CDS3926050 477 - 0.446541
CV2997 PBPRA0024 Hypothetical flagellar assembly proteinchromosome 1 CDS25868 687 + 0.458515
CV2999 PBPRA0022 Hypothetical FliF Flagellar M-ring transmembrane proteinchromosome 1 CDS23174 1683 + 0.460487
EBIG1843 PBPRA0278 hypothetical fimbrial assembly protein PilPchromosome 1 CDS292158 522 + 0.444444
ETPF PBPRA3479 putative general secretion pathway protein Fchromosome 1 CDS3930921 1233 - 0.446878
EXBD1 PBPRA2105 putative ExbD, Biopolymer transport protein ExbD/TolRchromosome 1 CDS2422719 324 + 0.407407
FLGM OR PBPRA0897 putative negative regulator of flagellin synthesis FlgMchromosome 1 CDS994152 315 - 0.44127
FLIH PBPRA0925 Hypothetical polar flagellar assembly protein, FliHchromosome 1 CDS1023613 801 + 0.456929
GSPC PBPRA3482 putative general secretion pathway protein Cchromosome 1 CDS3935707 897 - 0.411371
GSPE PBPRA3480 putative general secretion pathway protein Echromosome 1 CDS3932153 1485 - 0.452525
GSPG PBPRA3478 putative type II secretory pathway, pseudopilin EpsGchromosome 1 CDS3930464 468 - 0.425214
GSPI PBPRA3476 putative type II secretory pathway, pseudopilin EpsIchromosome 1 CDS3929509 321 - 0.457944
HD0715 PBPRA0120 conserved hypothetical proteinchromosome 1 CDS123555 339 + 0.451327
HD1309 PBPRA2494 Hypothetical membrane proteinchromosome 1 CDS2889826 438 + 0.406393
MSHG PBPRA3279 putative MSHA biogenesis protein MshGchromosome 1 CDS3714013 1224 - 0.455882
MSHL PBPRA3283 putative MSHA biogenesis protein MshLchromosome 1 CDS3719072 1671 - 0.442849
NE2488 PBPRA0936 polar flagellar assembly protein FlhAchromosome 1 CDS1034110 2097 + 0.43443
NMA1272 PBPRA1643 conserved hypothetical proteinchromosome 1 CDS1874053 333 - 0.435435
PA3805 PBPRA0761 Hypothetical fimbrial biogenesis and twitching motility proteinchromosome 1 CDS841023 729 + 0.363512
PA4556 PBPRA0699 hypothetical fimbrial assembly protein PilEchromosome 1 CDS775743 381 - 0.388451
PILA PBPRA3200 hypothetical pilin PilAchromosome 1 CDS3636200 408 + 0.401961
PILC PBPRA3202 putative Type IV pilin biogenesis proteinchromosome 1 CDS3638397 1221 + 0.435708
PLU1256 PBPRA3042 putative signal recognition particle proteinchromosome 1 CDS3484622 1368 - 0.454678
PLU1945 PBPRA0926 putative polar flagellum-specific ATP synthase FliIchromosome 1 CDS1024413 1323 + 0.465608
PLU3869 PBPRA2637 putative gi|27363512|ref|NP_759040.1| ATP-dependent Clp protease, proteolytic subunit [Vibrio vulnificus CMCP6]chromosome 1 CDS3054805 624 - 0.426282
PLU3903 PBPRA0744 conserved hypothetical proteinchromosome 1 CDS825010 336 + 0.407738
PLU4532 PBPRA0607 putative protein export-membrane proteinchromosome 1 CDS664992 336 + 0.446429
PM0848 PBPRA2500 hypothetical Flp pilus assembly protein TadBchromosome 1 CDS2895550 909 + 0.475248
PP4344 PBPRA0012 Putative flagellar biosynthesis proteinchromosome 1 CDS13497 2103 - 0.462197
PP4353 PBPRA0934 putative polar flagellar assembly protein FliRchromosome 1 CDS1031894 783 + 0.422733
PSPTO092 PBPRA3203 putative leader peptidase PilDchromosome 1 CDS3639765 900 + 0.45
PSPTO197 PBPRA0935 putative flagellar biosynthetic protein FlhBchromosome 1 CDS1032676 1131 + 0.42794
PSPTO197 PBPRA0932 Putative polar flagellar assembly protein, FliPchromosome 1 CDS1030622 855 + 0.430409
PSPTO197 PBPRA0933 Putative polar flagellar assembly protein, FliQchromosome 1 CDS1031539 270 + 0.385185
RA0852 PBPRA2499 putative Flp pilus assembly proteinchromosome 1 CDS2894279 1275 + 0.477647
RB12774 PBPRA3280 putative MSHA biogenesis protein MshEchromosome 1 CDS3715244 1713 - 0.469936
RCPA PBPRA2496 hypothetical Flp pilus assembly proteinchromosome 1 CDS2891127 1386 + 0.457431
RS01326 PBPRA0279 putative fimbrial assembly proteinchromosome 1 CDS292702 1704 + 0.406103
S0026 PBPRA0592 putative lipoprotein signal peptidasechromosome 1 CDS646268 465 + 0.406452
S1572 PBPRA2595 putative protease IVchromosome 1 CDS3005930 1854 + 0.435814
SF0346 PBPRA0746 Putative preprotein translocase subunit SecFchromosome 1 CDS827236 948 + 0.437764
SF4054 PBPRA3438 putative preprotein translocase subunit SecEchromosome 1 CDS3892048 378 - 0.484127
SO0052 PBPRA0226 putative protein-transport protein SecBchromosome 1 CDS233802 474 + 0.42827
SO0166 PBPRA3481 putative type II secretory pathway, component EpsDchromosome 1 CDS3933652 2013 - 0.441133
SO0173 PBPRA3474 hypotetical general secretion pathway protein Kchromosome 1 CDS3927811 954 - 0.438155
SO1297 PBPRA0440 putative general secretion pathway protein Achromosome 1 CDS454184 1671 + 0.463196
SO1297 PBPRA3282 hypothetical type II secretory pathway, component ExeAchromosome 1 CDS3718226 843 - 0.451957
SO1347 PBPRA3090 putative signal peptidase Ichromosome 1 CDS3530500 900 - 0.444444
SO2891 PBPRA1745 Hypothetical proteinchromosome 1 CDS2000551 345 + 0.37971
SO3218 PBPRA0016 Putative flagellar assembly proteinchromosome 1 CDS17795 729 - 0.444444
SO3224 PBPRA0927 putative flagellar protein FliJchromosome 1 CDS1025766 441 + 0.39229
SO3225 PBPRA0025 Putative FliI, flagellum-specific ATP synthasechromosome 1 CDS26547 1341 + 0.482476
SO3228 PBPRA0923 Putative polar flagellar M-ring protein FliFchromosome 1 CDS1020800 1743 + 0.443488
SO3229 PBPRA0922 Putative flagellar hook-basal body proteinchromosome 1 CDS1020472 312 + 0.442308
SO3671 PBPRA2104 putative ExbB-like proteinchromosome 1 CDS2421961 666 + 0.445946
SO4202 PBPRA0119 putative TatA proteinchromosome 1 CDS123288 264 + 0.405303
STM0136 PBPRA3208 putative SecA, preprotein translocase subunit SecAchromosome 1 CDS3642881 2733 - 0.435053
STY0792 PBPRA2552 putative tolR membrane proteinchromosome 1 CDS2960133 444 - 0.40991
STY2169 PBPRA0917 putative polar flagellar protein FlaJchromosome 1 CDS1013744 411 + 0.423358
STY3364 PBPRA0450 putative outer membrane protein TolCchromosome 1 CDS468803 1287 - 0.418026
STY4378 PBPRA0340 putative preprotein translocase, SecY subunitchromosome 1 CDS341839 1317 + 0.43432
T3951 PBPRA0153 putative cell division protein FtsYchromosome 1 CDS153630 1284 + 0.445483
TADC PBPRA2501 hypothetical Flp pilus assembly protein TadCchromosome 1 CDS2896458 852 + 0.449531
TAPB PBPRA3201 putative type IV pilin assembly protein PilBchromosome 1 CDS3636660 1638 + 0.473138
VC2634 PBPRA0275 hypothetical fimbrial assembly protein PilMchromosome 1 CDS289879 1035 + 0.446377
VP0137 PBPRA3477 putative general secretion pathway protein Hchromosome 1 CDS3929865 582 - 0.410653
VP0139 PBPRA3475 putative Type II secretory pathway, component EpsJchromosome 1 CDS3928851 669 - 0.446936
VP0657 PBPRA0700 hypothetical type IV pilinchromosome 1 CDS776216 630 + 0.407937
VP0770 PBPRA0896 putative chaperone FlgNchromosome 1 CDS993677 429 - 0.391608
VP2236 PBPRA0013 Hypothetical FlhB flagellar biosynthetic proteinchromosome 1 CDS15616 1128 - 0.454787
VP2238 PBPRA0015 putative flagellar biosynthetic proteinchromosome 1 CDS17523 270 - 0.451852
VP2743 PBPRA0282 hypothetical DamX-related proteinchromosome 1 CDS296205 1509 + 0.435388
VP2857 PBPRA0233 Hypothetical periplasmic protein CpxPchromosome 1 CDS239289 483 + 0.449275
VPA1579 PBPRA1558 putative outer membrane proteinchromosome 1 CDS1770676 1554 + 0.428571
VV0003 PBPRA0003 Putative inner membrane protein, 60 kDachromosome 1 CDS2254 1617 - 0.453309
VV11379 PBPRA0277 hypothetical fimbrial assembly protein PilOchromosome 1 CDS291562 600 + 0.41
VV20850 PBPRA1005 hypothetical outer membrane cation efflux proteinchromosome 1 CDS1114797 1353 - 0.436068
VV2275 PBPRA2550 putative TolB proteinchromosome 1 CDS2957716 1350 - 0.43037
XAC1946 PBPRA0931 putative polar flagellar switch protein FliNchromosome 1 CDS1029833 390 + 0.451282
XAC2923 PBPRA3141 putative twitching motility protein PilTchromosome 1 CDS3577569 1110 - 0.442342
XAC2924 PBPRA3142 putative twitching motility protein PilTchromosome 1 CDS3578747 1038 - 0.44894
XCC3231 PBPRA0276 hypothetical fimbrial assembly protein PilNchromosome 1 CDS290910 660 + 0.445455
Y3058 PBPRA2553 Putative TolQ proteinchromosome 1 CDS2960583 687 - 0.432314
Y3465 PBPRA0021 Hypothetical FliE-like hook basal body proteinchromosome 1 CDS22816 345 + 0.428986
Y3468 PBPRA0017 putative flagellar motor switch proteinchromosome 1 CDS18523 354 - 0.420904
YCHE PBPRA1102 putative transporter proteinchromosome 1 CDS1220947 657 - 0.436834
YPO0741 PBPRA0043 Hypothetical LafCchromosome 1 CDS44142 408 + 0.482843
YPO2216 PBPRA2480 putative sohB protein, peptidase U7 familychromosome 1 CDS2873036 1062 - 0.408663
YPO3776 PBPRA0121 conserved hypothetical proteinchromosome 1 CDS123905 762 + 0.431759
Z4656 PBPRA3577 Hypothetical Smf proteinchromosome 1 CDS4042957 1098 - 0.45082