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2024-05-18 08:17:48

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 148

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas fluorescens Pf-5, Pf-5
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PFL_0537 outer membrane efflux proteinchromosome CDS626029 1431 - 0.642208
NA PFL_0422 sec-independent protein translocase TatAchromosome CDS487213 282 - 0.599291
NA PFL_0158 outer membrane efflux proteinchromosome CDS183962 1449 + 0.696342
NA PFL_4706 lipoprotein, putativechromosome CDS5435245 2925 + 0.543248
NA PFL_0993 MotA/TolQ/ExbB proton channel family proteinchromosome CDS1134673 645 + 0.643411
NA PFL_0622 adhesin/haemagglutinin, HecA familychromosome CDS721622 9636 + 0.653798
NA PFL_2984 outer membrane efflux proteinchromosome CDS3359848 1494 + 0.670683
NA PFL_0701 conserved hypothetical proteinchromosome CDS812873 1677 - 0.632677
NA PFL_5287 type IV pilus protein PilAchromosome CDS6056971 417 - 0.64988
NA PFL_3615 ABC-type export system, outer membrane channel proteinchromosome CDS4171466 1785 + 0.693557
NA PFL_6230 inner membrane protein, 60 kDachromosome CDS7071934 1701 - 0.571429
NA PFL_2945 Outer membrane efflux protein familychromosome CDS3297627 1491 - 0.657277
NA PFL_3924 fimbrial biogenesis usher protein, interruption-Cchromosome CDS4530506 2481 + 0.620314
NA PFL_5374 ABC transporter, permease proteinchromosome CDS6142187 1341 - 0.652498
NA PFL_3634 outer membrane autotransporter, putativechromosome CDS4194234 3132 - 0.670498
NA PFL_0663 membrane protein, MarC familychromosome CDS771589 597 - 0.648241
NA PFL_4127 outer membrane efflux proteinchromosome CDS4790837 1479 - 0.720081
NA PFL_2761 haemagluttinin repeat proteinchromosome CDS3054644 12564 + 0.686644
NA PFL_4679 integral membrane protein, putativechromosome CDS5406087 1167 + 0.55527
NA PFL_4236 activation/secretion protein, TPS family, putativechromosome CDS4925228 1725 + 0.669565
NA PFL_0694 conserved hypothetical proteinchromosome CDS806109 882 - 0.659864
NA PFL_1467 filamentous haemagglutinin family proteinchromosome CDS1647390 3036 + 0.63307
NA PFL_4739 clp protease, putativechromosome CDS5477036 558 + 0.589606
NA PFL_0452 conserved hypothetical proteinchromosome CDS518011 1581 + 0.645161
NA PFL_5946 type II secretion system protein, putativechromosome CDS6758199 1779 + 0.652614
NA PFL_0227 transport protein ExbD PA0199chromosome CDS264057 402 + 0.621891
NA PFL_1464 outer membrane usher proteinchromosome CDS1642140 2691 + 0.639911
NA PFL_0697 bacterial type II/III secretion system proteinchromosome CDS809462 1254 - 0.655502
NA PFL_4682 type IV prepilin PilV, putativechromosome CDS5408742 1212 + 0.537954
NA PFL_1469 probable adhesin PA4082chromosome CDS1651932 2889 + 0.625476
NA PFL_3922 type I pilus biogenesis proteinchromosome CDS4529017 582 + 0.57732
NA PFL_2757 general secretion pathway protein Echromosome CDS3048781 1422 + 0.694093
NA PFL_5562 secretion protein SecY PA4243chromosome CDS6352010 1329 - 0.537998
NA PFL_5313 conserved hypothetical proteinchromosome CDS6081098 474 - 0.622363
NA PFL_1555 filamentous hemagglutinin, intein-containing, putativechromosome CDS1753593 111 + 0.54955
NA PFL_0421 sec-independent protein translocase TatBchromosome CDS486744 459 - 0.675381
NA PFL_3206 ABC transporter, permease proteinchromosome CDS3696341 1350 - 0.642222
NA PFL_5949 conserved hypothetical proteinchromosome CDS6762712 450 + 0.646667
NA PFL_0696 conserved hypothetical proteinchromosome CDS808278 1188 - 0.675084
NA PFL_4681 type IV pilus biosythesis proteinchromosome CDS5407796 957 + 0.568443
NA PFL_0990 TonB system transport proteinchromosome CDS1131181 408 + 0.514706
NA PFL_2822 transport protein ExbD PA0694chromosome CDS3147094 426 + 0.638498
NA PFL_0134 agglutination proteinchromosome CDS155440 1353 + 0.605322
NA PFL_0226 TonB system transport protein ExbBchromosome CDS263330 726 + 0.658402
NA PFL_4485 FlgN protein superfamilychromosome CDS5196717 468 + 0.59188
NA PFL_1250 conserved hypothetical proteinchromosome CDS1420268 1299 - 0.665127
NA PFL_2821 transport protein ExbB2 PA0693chromosome CDS3145265 1818 + 0.665567
NA PFL_1996 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS2223871 1143 + 0.629921
NA PFL_4758 tolB proteinchromosome CDS5496537 1302 - 0.584485
NA PFL_0133 calcium-binding outer membrane-like proteinchromosome CDS140316 14763 - 0.622028
NA PFL_1642 flagellar protein FliJchromosome CDS1845673 450 + 0.648889
NA PFL_0165 hemolysin activator protein, HlyB familychromosome CDS195002 318 + 0.613208
NA PFL_0692 TPR domain proteinchromosome CDS804477 735 - 0.677551
NA PFL_3950 type I pili usher protein CsuDchromosome CDS4562862 2358 - 0.663274
NA PFL_0204 pesticin immunity protein, putativechromosome CDS239869 447 + 0.626398
NA PFL_1466 hemolysin activator protein, HlyB family, putativechromosome CDS1645563 1752 + 0.653539
NA PFL_4678 type IV pilus biogenesis protein PilQchromosome CDS5404562 1533 + 0.561644
NA PFL_4973 preprotein translocase, YajC subunit, putativechromosome CDS5725718 339 - 0.575221
NA PFL_6068 TonB system transport protein ExbDchromosome CDS6888808 429 + 0.613054
NA PFL_4376 outer membrane autotransporterchromosome CDS5082536 3192 - 0.624373
NA PFL_3923 pilus assembly chaperonechromosome CDS4529671 750 + 0.554667
NA PFL_0698 conserved hypothetical proteinchromosome CDS810735 936 - 0.667735
NA PFL_2756 general secretion pathway protein Dchromosome CDS3046176 2385 + 0.671279
NA PFL_1552 filamentous haemagglutinin family protein, intein-containingchromosome CDS1741816 8721 + 0.611398
NA PFL_5311 type IV pilus biogenesis proteinchromosome CDS6077632 402 - 0.597015
NA PFL_2069 conserved hypothetical proteinchromosome CDS2294918 2691 + 0.640282
NA PFL_5317 pilin, putativechromosome CDS6083329 525 + 0.649524
NA PFL_1463 pilus assembly chaperonechromosome CDS1641329 744 + 0.52957
NA PFL_1777 biopolymer transport protein ExbD/TolR familychromosome CDS1980073 429 + 0.624709
NA PFL_3688 haemagluttinin repeat proteinchromosome CDS4267333 11103 - 0.656759
NA PFL_3918 outer membrane efflux proteinchromosome CDS4522823 1470 - 0.630612
NA PFL_4484 negative regulator of flagellin synthesis FlgM, putativechromosome CDS5196351 318 + 0.572327
NA PFL_1551 hemolysin activator protein, HlyB familychromosome CDS1739932 1743 + 0.648308
NA PFL_1776 MotA/TolQ/ExbB proton channel family proteinchromosome CDS1979450 627 + 0.626794
NA PFL_2752 type II secretion pathway protein XcpTchromosome CDS3042869 552 + 0.621377
NA PFL_2820 outer membrane protein, OMP85 familychromosome CDS3143567 1677 + 0.65653
NA PFL_0144 outer membrane efflux proteinchromosome CDS168288 1482 + 0.679487
NA PFL_4237 haemagglutination repeat proteinchromosome CDS4926949 5067 + 0.664693
NA PFL_3119 conserved hypothetical proteinchromosome CDS3589667 579 + 0.62867
NA PFL_5220 cobalt/zinc/cadmium efflux RND transporter, outer membrane protein, CzcC familychromosome CDS5979008 1251 - 0.693845
NA PFL_0693 type II secretion system protein F domainchromosome CDS805223 885 - 0.645198
NA PFL_2862 RND efflux transporter, outer membrane proteinchromosome CDS3196299 1494 + 0.677376
NA PFL_5595 preprotein translocase, SecE subunitchromosome CDS6378760 369 - 0.520325
NA PFL_2556 outer membrane efflux proteinchromosome CDS2830876 1413 - 0.673036
NA PFL_0695 type II/IV secretion system proteinchromosome CDS807007 1275 - 0.643922
NA PFL_4760 biopolymer transport protein TolRchromosome CDS5498896 453 - 0.576159
NA PFL_1369 conserved hypothetical proteinchromosome CDS1546758 621 - 0.653784
NA PFL_1003 outer membrane efflux proteinchromosome CDS1148448 1512 + 0.675926
NA PFL_5312 type IV pilus-associated protein, putativechromosome CDS6078049 3063 - 0.653934
NA PFL_3712 tolR proteinchromosome CDS4307502 447 - 0.659955
NA PFL_1556 filamentous haemagglutinin family proteinchromosome CDS1753869 3294 + 0.564056
NA PFL_3713 tolQ proteinchromosome CDS4307965 711 - 0.651196
NA PFL_0166 adhesin/haemagglutinin, HecA familychromosome CDS195347 9135 + 0.612261
NA PFL_4956 type IV pilus biogenesis protein PilFchromosome CDS5711131 759 - 0.587615
NA PFL_1462 type I pilus biogensis protein FimAchromosome CDS1640735 567 + 0.553792
NA PFL_3242 multidrug efflux RND outer membrane protein OprNchromosome CDS3741600 1422 + 0.68706
NA PFL_6067 TonB system transport protein ExbBchromosome CDS6887797 1005 + 0.661692
NA PFL_3951 type I pilus usher pathway chaperone CsuCchromosome CDS4565339 792 - 0.671717
NA PFL_1768 conserved hypothetical proteinchromosome CDS1970076 408 - 0.620098
NA PFL_2748 general secretion pathway protein Jchromosome CDS3040804 612 - 0.691176
NA PFL_1465 pili assembly chaperonechromosome CDS1644830 759 + 0.662714
NA PFL_0621 hemolysin activator protein, HlyB familychromosome CDS719883 1704 + 0.647887
NA PFL_5316 pilin, putativechromosome CDS6082727 471 - 0.609342
NA PFL_1790 signal peptide peptidase SppA, 36K typechromosome CDS1994201 990 + 0.59697
NA PFL_1592 conserved hypothetical proteinchromosome CDS1790577 438 - 0.611872
NA PFL_2799 multidrug efflux MFS outer membrane protein, putativechromosome CDS3118032 1497 + 0.654643
ccmD PFL_1683 cytochrome c-type biogenesis protein CcmDchromosome CDS1885316 177 + 0.610169
clpP PFL_3987 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS4605758 636 - 0.564465
dprA PFL_0024 smf proteinchromosome CDS25762 1095 + 0.689498
ffh PFL_1093 signal recognition particle proteinchromosome CDS1248189 1377 + 0.61801
flhA PFL_1664 flagellar biosynthesis protein FlhAchromosome CDS1866657 2130 + 0.619718
flhB PFL_1654 flagellar biosynthetic protein FlhBchromosome CDS1854568 1137 + 0.639402
fliE PFL_1637 flagellar hook-basal body complex protein (FliE)chromosome CDS1840325 327 + 0.529052
fliF PFL_1638 flagellar M-ring protein FliFchromosome CDS1840667 1788 + 0.637584
fliH PFL_1640 Flagellar assembly protein FliHchromosome CDS1843476 843 + 0.637011
fliI PFL_1641 flagellum-specific ATP synthase FliIchromosome CDS1844308 1359 + 0.655629
fliN PFL_1649 flagellar motor switch protein FliNchromosome CDS1851829 462 + 0.614719
fliP PFL_1651 flagellar biosynthetic protein FliPchromosome CDS1852758 726 + 0.612948
fliQ PFL_1652 flagellar biosynthetic protein FliQchromosome CDS1853508 270 + 0.6
fliR PFL_1653 flagellar biosynthetic protein FliRchromosome CDS1853797 768 + 0.625
fliS PFL_1632 flagellar protein FliSchromosome CDS1835112 396 + 0.568182
ftsY PFL_5857 signal recognition particle-docking protein FtsYchromosome CDS6660701 1494 - 0.65261
gspH PFL_2749 general secretion pathway protein Hchromosome CDS3041412 462 - 0.67316
gspI PFL_2751 general secretion pathway protein Ichromosome CDS3042436 387 - 0.689922
gspK PFL_2753 General secretion pathway protein Kchromosome CDS3043429 981 + 0.681957
lepB PFL_1070 signal peptidase Ichromosome CDS1221895 855 + 0.597661
lspA PFL_5320 signal peptidase IIchromosome CDS6085349 513 - 0.617934
mtrE PFL_2142 outer membrane efflux proteinchromosome CDS2364934 1431 - 0.694619
mtrE PFL_4083 outer membrane efflux proteinchromosome CDS4711831 1392 + 0.672414
mtrE PFL_1330 outer membrane efflux proteinchromosome CDS1504150 1461 - 0.651608
pilC PFL_5288 type IV pilus biogenesis protein PilCchromosome CDS6057717 1218 + 0.646141
pilC PFL_2758 general secretion pathway protein Fchromosome CDS3050202 1212 + 0.691419
pilD PFL_5289 type IV pilus prepilin peptidase PilDchromosome CDS6058937 873 + 0.634593
pilM PFL_0445 type IV pilus biogenesis protein PilMchromosome CDS511691 1062 + 0.661959
pilN PFL_4676 type IV pilus protein, PilNchromosome CDS5400859 1842 + 0.579262
pilN PFL_0446 type IV pilus biogenesis protein PilNchromosome CDS512752 567 + 0.631393
pilO PFL_0447 type IV pilus biogenesis protein PilOchromosome CDS513315 624 + 0.649038
pilP PFL_0448 type IV pilus biogenesis protein PilPchromosome CDS513935 531 + 0.647834
pilQ PFL_0449 type IV pilus biogenesis protein PilQchromosome CDS514480 1752 + 0.628995
pilT-1 PFL_5837 twitching motility proteinchromosome CDS6645826 1248 - 0.66266
secA PFL_1271 preprotein translocase, SecA subunitchromosome CDS1442402 201 - 0.59204
secA PFL_4781 preprotein translocase, SecA subunitchromosome CDS5518760 2742 - 0.602845
secB PFL_0374 protein-export protein SecBchromosome CDS426107 480 + 0.6
secD PFL_4972 protein-export membrane protein SecDchromosome CDS5723787 1869 - 0.605136
secF PFL_4971 protein-export membrane protein SecFchromosome CDS5722863 915 - 0.60765
sppA PFL_3667 peptidase, U7 familychromosome CDS4241924 1035 - 0.610628
tatC PFL_0420 Sec-independent protein translocase TatCchromosome CDS485953 795 - 0.623899
tolQ PFL_4761 tolQ proteinchromosome CDS5499362 696 - 0.622126