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2024-05-21 01:59:07

Gene list

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COG category: Intracellular trafficking and secretion
Genomic element: chromosome

Number of genes found: 157

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pirellula sp., 1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RB7439 hypothetical protein-putative signal peptidase Ichromosome CDS3988692 1311 - 0.570557
NA RB1153 hypothetical protein-signal peptide predictionchromosome CDS592253 465 + 0.550538
NA RB3933 hypothetical protein-transmembrane predictionchromosome CDS2035200 438 + 0.538813
NA RB7559 hypothetical protein-putative transporterchromosome CDS4059970 423 + 0.550827
NA RB11626 similar to preprotein translocase SecA chainchromosome CDS6271177 1512 - 0.517196
NA RB3260 hypothetical proteinchromosome CDS1677574 225 - 0.551111
NA RB7603 conserved hypothetical proteinchromosome CDS4088560 2511 - 0.563122
NA RB6180 similar to component of Sec-independent protein secretion pathwaychromosome CDS3240284 303 + 0.544554
NA RB2895 probable Biopolymer transport exbD proteinchromosome CDS1505738 441 - 0.539683
NA RB7321 hypothetical proteinchromosome CDS3895351 18474 + 0.557811
NA RB154 lipoprotein receptor-related proteinchromosome CDS73499 7548 + 0.548357
NA RB1149 probable integral membrane proteinchromosome CDS591315 942 + 0.531847
NA RB5913 hypothetical protein-signal peptide predictionchromosome CDS3096746 489 - 0.529652
NA RB5149 hypothetical protein-transmembrane predictionchromosome CDS2649249 1173 - 0.522592
NA RB11294 probable general secretion pathway protein Echromosome CDS6121139 3852 + 0.538681
NA RB13073 putative secretory proteinchromosome CDS7016043 1410 + 0.589362
NA RB12055 probable tolQ-type transport proteinchromosome CDS6502628 960 - 0.572917
NA RB11595 general secretion pathway protein Echromosome CDS6252371 1764 + 0.553288
NA RB2850 hypothetical protein-transmembrane predictionchromosome CDS1481069 744 - 0.513441
NA RB183 conserved hypothetical protein-putative outer membrane proteinchromosome CDS93532 1785 - 0.578712
NA RB4862 similar to pre-neck appendage proteinchromosome CDS2492119 1350 - 0.562222
NA RB11597 general secretion pathway protein Fchromosome CDS6254216 1164 + 0.547251
NA RB3479 hypothetical protein-putative general secretory pathway proteinchromosome CDS1797880 3264 + 0.566789
NA RB4151 similar to type IV pilus assembly protein TapBchromosome CDS2133421 1101 - 0.554042
NA RB10666 conserved hypothetical protein-putative archaeal proteinchromosome CDS5790485 5910 - 0.589509
NA RB1145 conserved hypothetical proteinchromosome CDS587652 1245 + 0.558233
NA RB3603 similar to peptidase yuxLchromosome CDS1874427 1035 - 0.537198
NA RB13238 hypothetical protein-transmembrane predictionchromosome CDS7101410 495 + 0.533333
NA RB10423 probable cycloinulo-oligosaccharide fructanotransferasechromosome CDS5640680 6240 + 0.541026
NA RB7341 similar to surface-associated protein cshA precursorchromosome CDS3913925 22617 + 0.555777
NA RB7789 similar to tolB protein [precursor]chromosome CDS4172308 939 + 0.55804
NA RB13077 probable integral membrane proteinchromosome CDS7018654 921 + 0.58089
NA RB4375 probable extracellular nucleasechromosome CDS2242933 9171 - 0.571911
NA RB8102 similar to general secretion pathway protein Gchromosome CDS4337885 1164 - 0.545533
NA RB13063 hypothetical protein-transmembrane predictionchromosome CDS7010406 1089 + 0.543618
NA RB3482 general secretion pathway protein Echromosome CDS1801140 1692 + 0.547872
NA RB9390 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS5035453 3039 + 0.559065
NA RB11828 conserved hypothetical protein-putative transmembrane proteinchromosome CDS6373827 1941 + 0.567749
NA RB13235 hypothetical protein-transmembrane predictionchromosome CDS7099815 423 + 0.520095
NA RB13062 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS7009944 426 + 0.556338
NA RB3524 conserved hypothetical protein-possibly heme/hemopexin utilization protein huxBchromosome CDS1825364 1851 - 0.540249
NA RB923 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS489282 396 + 0.60101
NA RB2442 hypothetical proteinchromosome CDS1273297 3153 - 0.560419
NA RB7078 hypothetical proteinchromosome CDS3758295 2034 + 0.563422
NA RB5515 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS2858616 519 - 0.566474
NA RB10266 probable NADH-dependent dyhydrogenase-putative NAD-employing oxidorecutase of the GFO familychromosome CDS5547471 1563 - 0.567498
NA RB9308 hypothetical protein-putative conserved hypothetical proteinchromosome CDS4976960 1890 - 0.573545
NA RB5638 conserved hypothetical proteinchromosome CDS2936814 2349 + 0.559813
NA RB10702 similar to biopolymer transport exbD2 proteinchromosome CDS5813809 489 + 0.509202
NA RB1120 conserved hypothetical proteinchromosome CDS575033 1956 - 0.554192
NA RB3571 probable TolB protein [Precursor]chromosome CDS1855012 3546 - 0.549915
NA RB2860 probable fimbrial assembly protein PilMchromosome CDS1487828 2160 + 0.539815
NA RB8516 similar to secretion proteinchromosome CDS4542940 2076 - 0.573699
NA RB12783 hypothetical proteinchromosome CDS6889970 1308 + 0.547401
NA RB101 probable acylaminoacyl-peptidasechromosome CDS41251 3165 - 0.533333
NA RB3527 conserved hypothetical protein-possibly heme/hemopexin utilization protein huxAchromosome CDS1827580 12765 + 0.543752
NA RB7554 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS4058314 438 + 0.557078
NA RB8494 prepilin peptidase, type IVchromosome CDS4531481 1374 - 0.544396
NA RB6951 hypothetical protein-transmembrane predictionchromosome CDS3690015 3363 - 0.562593
NA RB1677 hypothetical proteinchromosome CDS876145 2067 + 0.548137
NA RB4061 probable type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS2095498 1467 + 0.559646
NA RB3484 type 4 fimbrial assembly protein pilCchromosome CDS1802913 1215 + 0.542387
NA RB11598 probable exogenous DNA-binding proteinchromosome CDS6255376 360 + 0.583333
NA RB12053 conserved hypothetical protein-putative export protein ExbDchromosome CDS6502199 360 - 0.563889
NA RB8704 hypothetical protein-putative transmembrane proteinchromosome CDS4631375 1299 + 0.581986
NA RB10560 hypothetical protein-putative GSP proteinchromosome CDS5729063 2805 - 0.557219
NA RB6184 hypothetical protein-transmembrane predictionchromosome CDS3240588 276 + 0.576087
NA RB13104 probable type II secretion system proteinchromosome CDS7028712 2115 + 0.574941
NA RB123 hypothetical protein-transmembrane predictionchromosome CDS52395 1293 - 0.535963
NA RB125 hypothetical protein-transmembrane predictionchromosome CDS53678 894 - 0.542506
NA RB6920 probable fimbrial proteinchromosome CDS3676847 1068 + 0.562734
NA RB149 probable outer membrane channel proteinchromosome CDS71197 2019 - 0.560178
NA RB6278 probable cyclophilin type peptidylprolyl isomerasechromosome CDS3297678 4626 - 0.562041
NA RB11769 probable aggregation factor core protein MAFp3, isoform Cchromosome CDS6335006 24522 + 0.566634
NA RB9053 probable membrane proteinchromosome CDS4830021 4566 + 0.573806
NA RB8240 60 kDa inner-membrane protein homolog-putative part of a protein secretion systemchromosome CDS4405428 2484 + 0.582126
NA RB844 probable surface-associated protein cshA precursorchromosome CDS445096 4632 + 0.556563
NA RB1661 hypothetical proteinchromosome CDS853319 23151 - 0.558637
NA RB13071 probable chromosome partitioning ATPasechromosome CDS7014838 1209 + 0.581472
NA RB1199 conserved hypothetical protein-putative type IV pilin-related proteinchromosome CDS611479 546 + 0.509158
NA RB1147 secretory protein kinasechromosome CDS589001 1377 + 0.555556
NA RB577 probable polymorphic membrane protein B/C familychromosome CDS317961 2112 - 0.519413
NA RB4256 hypothetical protein-signal peptide predictionchromosome CDS2180303 1077 + 0.550604
NA RB512 hypothetical protein-signal peptide predictionchromosome CDS283061 1290 - 0.563566
NA RB12866 conserved hypothetical proteinchromosome CDS6936276 1122 + 0.569519
NA RB4632 conserved hypothetical protein-putative preprotein translocase subunit yajCchromosome CDS2371386 420 + 0.545238
NA RB7472 hypothetical proteinchromosome CDS4006340 2754 + 0.545025
NA RB3934 hypothetical protein-transmembrane predictionchromosome CDS2035580 546 + 0.516484
NA RB5837 probable type-I signal peptidasechromosome CDS3060527 885 - 0.548023
SecA RB11690 preprotein translocase SecA subunitchromosome CDS6302988 3717 - 0.558515
aprF RB9646 similar to AprF-putative outer membrane efflux protein or secreted alkaline phosphatasechromosome CDS5191659 1914 - 0.562696
clpP RB10829 ATP-dependent clp protease proteolytic subunitchromosome CDS5879971 588 + 0.55102
clpP RB10826 ATP-dependent clp protease proteolytic subunitchromosome CDS5879229 684 + 0.532164
comQ RB1566 similar to general secretory pathway protein Dchromosome CDS799608 3486 - 0.551348
cpaA RB5170 similar to type IV prepilin peptidase CpaAchromosome CDS2658816 558 + 0.532258
cpaB RB5172 probable pilus assembly protein CpaBchromosome CDS2659566 1212 + 0.551155
cpaC RB5174 putative outer membrane channel for pilus assembly CpaCchromosome CDS2660936 1770 + 0.550847
czcC RB4540 probable divalent cation resistant determinant protein Cchromosome CDS2326366 1437 - 0.562283
dprA RB10519 DNA processing chain Achromosome CDS5706831 1368 + 0.586988
exbB RB1165 probable biopolymer transport ExbB-related proteinchromosome CDS597714 1056 - 0.58428
exbD RB1164 probable biopolymer transport ExbD proteinchromosome CDS597316 399 - 0.553885
exbD RB10704 probable biopolymer transport exbD proteinchromosome CDS5814372 780 + 0.570513
ffh RB12825 signal recognition particle proteinchromosome CDS6917834 1476 - 0.568428
flhA RB8323 flagella-associated proteinchromosome CDS4443876 2064 - 0.54845
flhB RB1347 flagellar biosynthetic protein FlhBchromosome CDS683952 1083 + 0.5494
fliD RB3453 probable lateral flagellar hook-associated protein 2chromosome CDS1783051 2382 - 0.552477
fliE RB7444 probable flagellar hook-basal body complex protein FliEchromosome CDS3991601 420 + 0.538095
fliF RB7445 probable polar flagellar M-ring protein FliFchromosome CDS3992031 1638 + 0.56044
fliI RB12500 flagellum-specific ATP synthasechromosome CDS6729263 1404 - 0.596154
fliJ RB12499 similar to flagellar FliJ proteinchromosome CDS6728739 483 - 0.559006
fliN RB12357 probable flagellar motor switch protein fliN [Fragment]chromosome CDS6649396 435 - 0.547126
fliN RB9275 flagellar motor switch protein fliN (fragment)chromosome CDS4958039 426 + 0.56338
fliP RB1342 flagellar biosynthetic protein fliP-putative tr FT ansporter of flagellar proteinschromosome CDS681879 1011 + 0.555885
fliQ RB1344 probable flagellar biosynthetic protein fliQchromosome CDS682896 267 + 0.539326
fliR RB1345 probable flagellar biosynthetic protein fliRchromosome CDS683165 795 + 0.568553
fliS RB3750 similar to flagellar protein FliSchromosome CDS1938427 492 + 0.567073
ftsY RB4173 cell division protein FtsYchromosome CDS2145041 1014 + 0.573964
gspA RB1883 general secretion pathway protein Achromosome CDS968293 1851 - 0.573204
gspD RB1545 general secretion pathway protein D [Precursor]chromosome CDS790598 3798 + 0.565034
gspE RB128 general secretion pathway protein Echromosome CDS55536 1212 - 0.584984
gspG RB5519 similar to general secretion pathway protein Gchromosome CDS2859868 477 - 0.566038
gspG RB1522 similar to general secretion pathway protein G [precursor]chromosome CDS777494 1164 + 0.546392
gspK RB5513 probable general secretion pathway protein Kchromosome CDS2855743 1905 - 0.56378
hofB RB10227 general secretion pathway protein Echromosome CDS5525241 1341 - 0.558538
hofF RB11851 general secretion pathway protein F-putative pilus proteinchromosome CDS6381415 1041 + 0.541787
ibeB RB2381 probable outer membrane lipoprotein IbeBchromosome CDS1236988 1845 - 0.532791
ibeB RB11155 probable outer membrane proteinchromosome CDS6053518 1485 - 0.562963
lepB RB5154 probable signal peptidase Ichromosome CDS2652810 2184 - 0.550366
lspA RB10374 probable prolipoprotein signal peptidasechromosome CDS5609188 729 - 0.576132
outD RB13291 general secretion pathway protein D (outD)chromosome CDS7124664 2469 + 0.552855
outD RB1405 conserved hypothetical protein-putative protein transporterchromosome CDS715830 1566 + 0.525543
pilB RB12774 type IV fimbrial assembly protein PilBchromosome CDS6885973 1791 + 0.562256
pilB RB12768 type IV fimbrial assembly protein PilBchromosome CDS6882231 2106 + 0.566477
pilC RB12781 type IV fimbrial assembly protein PilCchromosome CDS6888383 1440 + 0.551389
pilC RB8707 probable type IV pilin biogenesis protein PilCchromosome CDS4632670 1089 + 0.566575
pilE1 RB8882 similar to fimbrial protein MS11-C3/MS11-G2 precursorchromosome CDS4726461 1050 - 0.577143
pilT RB10228 twitching motility protein PilTchromosome CDS5526582 1203 - 0.550291
pilT RB12773 twitching mobility protein PilTchromosome CDS6884826 1107 + 0.570912
secA RB2013 preprotein translocase secA subunitchromosome CDS1061404 2202 + 0.558583
secA RB148 preprotein translocase SecA subunitchromosome CDS69161 2052 - 0.563353
secD RB4633 protein-export membrane protein secDchromosome CDS2371842 3339 + 0.560647
secY RB7866 preprotein translocase secY subunitchromosome CDS4202820 1395 + 0.521864
sppA RB1371 proteinase IV homolog yteIchromosome CDS700085 1407 - 0.56361
tadA RB5940 secretion system protein TadAchromosome CDS3113588 1380 + 0.55
tadB RB1148 conserved hypothetical proteinchromosome CDS590374 945 + 0.528042
tadB RB5941 secretion system protein TadBchromosome CDS3115005 1044 + 0.544061
tadB RB13074 probable protein secretion system or pilus assembly related protein TadBchromosome CDS7017449 894 + 0.581656
tadC RB5942 probable secretion system protein TadCchromosome CDS3116114 987 + 0.54306
tapC RB8711 probable type IV pilus assembly protein TapCchromosome CDS4633755 1074 + 0.564246
tatC RB8531 Sec-independent protein translocase protein tatC homologchromosome CDS4550911 1215 - 0.549794
tolB RB6120 probable TolB proteinchromosome CDS3211382 3225 + 0.552248
tolB RB6732 probable TolB protein, protein/colicin/DNA uptake systemchromosome CDS3573460 3537 + 0.538309
tolQ RB861 probable biopolymer transport proteinchromosome CDS456326 1500 - 0.575333
tolQ RB6259 probable TolQ-type transport proteinchromosome CDS3288663 831 - 0.561974
tolQ RB3932 probable tolQ proteinchromosome CDS2034427 774 + 0.580103
tolQ RB10700 probable TolQchromosome CDS5813102 708 + 0.54096
yidR RB8792 conserved hypothetical proteinchromosome CDS4677023 1356 - 0.525074