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2024-05-15 06:52:24

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Phage Gifsy-1

Number of genes found: 131

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Phage Gifsy-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SC2693 putative outer membrane efflux proteinSubName: Full=Putative outer membrane efflux protein; chromosome CDS2856293 1410 + 0.568794
NA SC0364 TPA: injection proteinSubName: Full=Injection protein; chromosome CDS405723 1914 + 0.512539
NA SC2506 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2640508 2379 - 0.499369
NA SC4138 putative ABC exporter outer membrane component homologSubName: Full=Putative ABC exporter outer membrane component homolog; chromosome CDS4414481 1320 + 0.366667
NA SC4136 putative inner membrane or exportedSubName: Full=Putative inner membrane or exported; chromosome CDS4412474 633 + 0.338073
NA SC0341 orf, partial conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS385342 1881 + 0.509835
NA SC3843 possible exported proteinSubName: Full=Possible exported protein; chromosome CDS4085554 231 - 0.47619
bcfA SC0020 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS24470 543 + 0.521179
bcfB SC0021 fimbrial chaparoneSubName: Full=Fimbrial chaparone; chromosome CDS24972 828 + 0.509662
bcfD SC0022 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS28426 1008 + 0.501984
bcfE SC0023 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29434 546 + 0.492674
bcfF SC0024 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29995 519 + 0.558767
bcfG SC0025 fimbrial chaparoneSubName: Full=Fimbrial chaparone; chromosome CDS30479 732 + 0.54235
ccmD SC2256 heme exporter protein C, cytochrome c-type biogenesis proteinSubName: Full=Heme exporter protein C, cytochrome c-type biogenesis protein; chromosome CDS2365675 213 - 0.694836
clpP SC0490 proteolytic subunit of clpA-clpP ATP-dependent serine protease, heat shock protein F215RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; Flags: Precursor; chromosome CDS547451 741 + 0.496626
cpxP SC3951 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stressesSubName: Full=Periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresses; chromosome CDS4203638 501 + 0.50499
dspP SC3615 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS3823775 4341 + 0.528219
exbB SC3101 uptake of enterochelin; tonB-dependent uptake of B colicinsSubName: Full=Uptake of enterochelin tonB-dependent uptake of B colicins; chromosome CDS3279443 732 - 0.547814
exbD SC3100 uptake of enterochelin; tonB-dependent uptake of B colicinsSubName: Full=Uptake of enterochelin tonB-dependent uptake of B colicins; chromosome CDS3279034 426 - 0.507042
ffh SC2678 45S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNARecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2834378 1362 - 0.550661
fimA SC0582 major type 1 subunit fimbrin (pilin)SubName: Full=Major type 1 subunit fimbrin (Pilin); chromosome CDS648395 624 + 0.533654
fimD SC0585 outer membrane usher proteinSubName: Full=Outer membrane usher protein; chromosome CDS651732 2619 + 0.556319
fimF SC4440 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4751117 546 - 0.501832
fimF SC0587 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS655382 519 + 0.552987
fimH SC0586 minor fimbrial subunitSubName: Full=Minor fimbrial subunit; chromosome CDS654365 1008 + 0.516865
fimI SC0583 fimbrial protein internal segmentSubName: Full=Fimbrial protein internal segment; chromosome CDS649094 534 + 0.543071
flgM SC1119 anti-FliA (anti-sigma) factor; also known as RflB proteinSubName: Full=Anti-FliA (Anti-sigma) factor also known as RflB protein; chromosome CDS1237100 294 - 0.517007
flgN SC1118 flagellar biosynthesis: belived to be export chaperone for FlgK and FlgLSubName: Full=Flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL; chromosome CDS1236673 423 - 0.539007
flhA SC1920 flagellar biosynthesis; possible export of flagellar proteinsSubName: Full=Flagellar biosynthesis possible export of flagellar proteins; chromosome CDS2030792 2079 - 0.562771
flhB SC1921 putative part of export apparatus for flagellar proteinsSubName: Full=Putative part of export apparatus for flagellar proteins; chromosome CDS2032863 1152 - 0.560764
fliE SC1972 putative Flagellar hook-basal body proteinRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2077769 315 - 0.546032
fliF SC1974 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2078300 1683 + 0.571004
fliH SC1976 flagellar biosynthesis; possible export of flagellar proteinsSubName: Full=Flagellar biosynthesis possible export of flagellar proteins; chromosome CDS2080963 708 + 0.607345
fliI SC1977 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; chromosome CDS2081670 1371 + 0.596645
fliJ SC1978 flagellar fliJ proteinSubName: Full=Flagellar fliJ protein; chromosome CDS2083062 444 + 0.513514
fliN SC1982 flagellar biosynthesis, component of motor switch and energizingSubName: Full=Flagellar biosynthesis, component of motor switch and energizing; chromosome CDS2086297 414 + 0.543478
fliP SC1984 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2087087 738 + 0.536585
fliQ SC1985 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2087834 270 + 0.518519
fliR SC1986 putative flagellar biosynthetic proteinRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS2088112 795 + 0.515723
fliS SC1965 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)SubName: Full=Flagellar biosynthesis repressor of class 3a and 3b operons (RflA activity); chromosome CDS2072592 408 + 0.495098
ftsY SC3500 GTPase domain of cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS3692860 1476 - 0.552846
hofB SC0142 putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptakeSubName: Full=Putative integral membrane protein involved in biogenesis of fimbriae (Type IV pilin), protein transport, DNA uptake; chromosome CDS162377 1386 - 0.553391
hofC SC0141 putative component in type IV pilin biogenesisSubName: Full=Putative component in type IV pilin biogenesis; chromosome CDS161185 1203 - 0.540316
hofQ SC3420 putative transport protein, possibly in biosynthesis of type IV pilinSubName: Full=Putative transport protein, possibly in biosynthesis of type IV pilin; chromosome CDS3596703 1239 - 0.569814
hopD SC3376 leader peptidase HopDSubName: Full=Leader peptidase HopD; chromosome CDS3551227 594 + 0.521886
invA SC2828 invasion proteinSubName: Full=Invasion protein; chromosome CDS2991928 2058 - 0.455782
invC SC2826 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2990205 1296 - 0.544753
invG SC2830 invasion protein; outer membraneSubName: Full=Invasion protein outer membrane; chromosome CDS2995125 1689 - 0.462404
lepB SC2577 leader peptidase (signal peptidase I), serine proteaseRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS2746242 975 - 0.531282
lpfA SC3571 long polar fimbriaSubName: Full=Long polar fimbria; chromosome CDS3778230 537 - 0.463687
lpfB SC3570 long polar fimbrial chaperoneSubName: Full=Long polar fimbrial chaperone; chromosome CDS3777447 699 - 0.449213
lpfE SC3568 long polar fimbrial minor proteinSubName: Full=Long polar fimbrial minor protein; chromosome CDS3773266 528 - 0.511364
lspA SC0041 prolipoprotein signal peptidase (SPase II)RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS50943 501 + 0.528942
mac SC4137 putative methyl-accepting chemotaxis proteinSubName: Full=Putative methyl-accepting chemotaxis protein; chromosome CDS4413103 1389 + 0.366451
marC SC1539 putative MarC Transporter, multiple antibiotic resistance proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1636338 666 + 0.534535
misL SC3678 putative autotransported proteinSubName: Full=Putative autotransported protein; chromosome CDS3893274 2868 + 0.529637
oprM SC0393 outer membrane efflux protein-like proteinSubName: Full=Outer membrane efflux protein-like protein; chromosome CDS436959 1458 - 0.595336
orgB SC2801 putative flagellar biosynthesis/type III secretory pathway proteinSubName: Full=Putative flagellar biosynthesis/type III secretory pathway protein; chromosome CDS2967315 681 - 0.449339
ppdB SC2937 prepilin peptidase dependent protein B, putative component in type IV pilin biogenesisSubName: Full=Prepilin peptidase dependent protein B, putative component in type IV pilin biogenesis; chromosome CDS3116501 564 - 0.533688
ppdD SC0143 putative major component of type IV pilin, prelipin peptidase dependent proteinSubName: Full=Putative major component of type IV pilin, prelipin peptidase dependent protein; chromosome CDS163772 438 - 0.541096
prgK SC2803 cell invasion protein; lipoprotein, may link inner and outer membranesSubName: Full=Cell invasion protein lipoprotein, may link inner and outer membranes; chromosome CDS2968523 759 - 0.455863
safB SC0293 putative fimbriae assembly chaparoneSubName: Full=Putative fimbriae assembly chaparone; chromosome CDS337447 738 + 0.47832
safC SC0294 putative fimbriae usherSubName: Full=Putative fimbriae usher; chromosome CDS338208 2511 + 0.543608
secA SC0133 preprotein translocase; secretion protein of IISP familyRecName: Full=Protein translocase subunit SecA; chromosome CDS153022 2706 + 0.538803
secB SC3624 molecular chaperone in protein exportRecName: Full=Protein-export protein SecB; chromosome CDS3838539 468 - 0.508547
secD SC0449 preprotein translocase, IISP family, part of the channelRecName: Full=Protein translocase subunit SecD; chromosome CDS506823 1848 + 0.546537
secE SC4031 preprotein translocase IISP family, membrane subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS4296034 384 + 0.554688
secF SC0450 preprotein translocase, IISP family, membrane subunitRecName: Full=Protein-export membrane protein SecF; chromosome CDS508681 972 + 0.54321
secG SC3232 preprotein translocase IISP family, auxillary membrane componentSubName: Full=Preprotein translocase IISP family, auxillary membrane component; chromosome CDS3416591 528 - 0.496212
secY SC3354 preprotein translocase of IISP family, membrane subunit, putative ATPaseRecName: Full=Protein translocase subunit SecY; chromosome CDS3540470 1332 - 0.495495
sipC SC2816 cell invasion proteinSubName: Full=Cell invasion protein; chromosome CDS2981385 1230 - 0.474797
smf SC3341 putative protein involved in DNA uptakeSubName: Full=Uncharacterized protein; chromosome CDS3530122 1125 - 0.539556
sohB SC1713 putative peptidaseSubName: Full=Putative peptidase; chromosome CDS1826217 1047 - 0.543458
spaO SC2823 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2987863 912 - 0.529605
spaP SC2822 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2987199 675 - 0.419259
spaQ SC2821 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2986913 261 - 0.467433
spaR SC2820 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2986118 792 - 0.5
spaS SC2819 surface presentation of antigens; secretory proteinsSubName: Full=Surface presentation of antigens secretory proteins; chromosome CDS2985061 1071 - 0.434174
sppA SC1317 protease IV, a signal peptide peptidaseRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1413896 1857 - 0.559505
spy SC1329 periplasmic protein related to spheroblast formationSubName: Full=Periplasmic protein related to spheroblast formation; chromosome CDS1427220 486 + 0.5
ssaC SC1415 Secretion system apparatus SsaCSubName: Full=Secretion system apparatus SsaC; chromosome CDS1518145 1494 + 0.421687
ssaJ SC1430 Secretion system apparatus SsaJSubName: Full=Secretion system apparatus SsaJ; chromosome CDS1527965 750 + 0.418667
ssaN SC1436 Secretion system apparatus SsaNSubName: Full=Secretion system apparatus SsaN; chromosome CDS1533379 1302 + 0.510753
ssaQ SC1439 Secretion system apparatus SsaQSubName: Full=Secretion system apparatus SsaQ; chromosome CDS1535396 969 + 0.457172
ssaR SC1440 Secretion system apparatus SsaRSubName: Full=Secretion system apparatus SsaR; chromosome CDS1536432 648 + 0.430556
ssaS SC1441 Secretion system apparatus SsaSSubName: Full=Secretion system apparatus SsaS; chromosome CDS1537076 267 + 0.426966
ssaT SC1442 Secretion system apparatus SsaTSubName: Full=Secretion system apparatus SsaT; chromosome CDS1537343 780 + 0.389744
ssaU SC1443 Secretion system apparatus SsaUSubName: Full=Secretion system apparatus SsaU; chromosome CDS1538119 1059 + 0.396601
ssaV SC1435 Secretion system apparatus SsaVSubName: Full=Secretion system apparatus SsaV; chromosome CDS1531344 2046 + 0.466276
stbA SC0383 putative fimbriae; major subunitSubName: Full=Putative fimbriae major subunit; chromosome CDS428942 537 - 0.47486
stbB SC0382 putative fimbriae; chaparoneSubName: Full=Putative fimbriae chaparone; chromosome CDS428119 762 - 0.454068
stbC SC0381 putative fimbriae; usherSubName: Full=Putative fimbriae usher; chromosome CDS425574 2562 - 0.540593
stcB SC2166 putative periplasmic chaperone proteinSubName: Full=Putative periplasmic chaperone protein; chromosome CDS2268875 753 - 0.403718
stcC SC2165 paral putative outer membrane proteinSubName: Full=Paral putative outer membrane protein; chromosome CDS2266372 2490 - 0.457831
stdA SC2969 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS3149971 711 - 0.488045
stdB SC2968 putative outer membrane usher proteinSubName: Full=Putative outer membrane usher protein; chromosome CDS3147362 2490 - 0.608032
stdC SC2967 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS3146578 744 - 0.584677
steB SC2890 outer membrane usher proteinSubName: Full=Outer membrane usher protein; chromosome CDS3056123 2700 + 0.553704
stf SC1236 side tail fiber proteinSubName: Full=Side tail fiber protein; chromosome CDS1346171 2679 + 0.549459
stfA SC0195 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS226764 561 + 0.515152
stfC SC0196 putative fimbrial outer membrane usherSubName: Full=Putative fimbrial outer membrane usher; chromosome CDS227410 2658 + 0.55079
stfD SC0197 putative periplasmic fimbrial chaperoneSubName: Full=Putative periplasmic fimbrial chaperone; chromosome CDS230085 753 + 0.543161
stfD SC2891 putative periplasmic fimbrial chaperoneSubName: Full=Putative periplasmic fimbrial chaperone; chromosome CDS3058835 774 + 0.549096
stfE SC0198 putaive minor fimbrial subunitSubName: Full=Putative minor fimbrial subunit; chromosome CDS230856 513 + 0.559454
sthA SC4439 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4750363 684 - 0.457602
sthB SC4438 putative fimbrial usher proteinSubName: Full=Putative fimbrial usher protein; chromosome CDS4747780 2538 - 0.469661
sthD SC4437 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS4747205 558 - 0.501792
sthE SC4436 putative major fimbrial subunitSubName: Full=Putative major fimbrial subunit; chromosome CDS4746079 1086 - 0.519337
stiA SC0177 putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS204490 540 - 0.524074
stiB SC0176 putative fimbrial chaparoneSubName: Full=Putative fimbrial chaparone; chromosome CDS203759 684 - 0.533626
stiC SC0175 putativie fimbrial usherSubName: Full=Putativie fimbrial usher; chromosome CDS201189 2544 - 0.553852
tatA SC3871 component of Sec-independent protein secretion pathwayRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS4114736 255 + 0.458824
tatB SC3872 component of Sec-independent protein secretion pathwayRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS4114994 549 + 0.540984
tatC SC3873 part of sec-independent protein export, integral membrane proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS4115545 780 + 0.505128
tctB SC2719 tricarboxylic transportSubName: Full=Tricarboxylic transport; chromosome CDS2890262 435 + 0.574713
tolB SC0752 tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiproteiRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS844978 1293 + 0.556071
tolC SC3130 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes, role in organic solvent toleranceSubName: Full=Outer membrane channel specific tolerance to colicin E1 segregation of daughter chromosomes, role in organic solvent tolerance; chromosome CDS3309329 1476 + 0.523713
tolQ SC0749 tol protein, membrane-spanning inner membrane proteins, required for outer membrane integrity, uptake of group A colicins, and translocation of phageSubName: Full=Tol protein, membrane-spanning inner membrane proteins, required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; chromosome CDS842505 693 + 0.525253
tolR SC0750 tol protein, role in outer membrane integrity, uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasmSubName: Full=Tol protein, role in outer membrane integrity, uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasm; chromosome CDS843201 429 + 0.508159
vg05 SC1218 Gifsy-1 prophage head-tail preconnector gp5SubName: Full=Gifsy-1 prophage head-tail preconnector gp5; chromosome CDS1329539 1497 + 0.566466
virG SC0308 similar to Shigella VirG proteinSubName: Full=Similar to Shigella VirG protein; chromosome CDS354962 408 - 0.470588
yaiU SC0414 flagellar proteinSubName: Full=Flagellar protein; chromosome CDS469709 2886 + 0.452876
yajC SC0448 preprotein translocase IISP family, membrane subunitSubName: Full=Preprotein translocase IISP family, membrane subunit; chromosome CDS506463 333 + 0.51952
ybbJ SC0541 putative Membrane protein implicated in regulation of membrane protease activitySubName: Full=Putative Membrane protein implicated in regulation of membrane protease activity; chromosome CDS605330 453 - 0.600442
ybeC SC0661 putative Sec-independent protein secretion pathway componentRecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS737120 204 + 0.495098
ychE SC1743 putative integral membrane proteins of the MarC familySubName: Full=Putative integral membrane proteins of the MarC family; chromosome CDS1855130 648 - 0.507716
yfcP SC2894 fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS3060616 537 + 0.52514
yggR SC3039 putative protein transportSubName: Full=Uncharacterized protein; chromosome CDS3219437 981 - 0.571865
yidC SC3759 putative Preprotein translocase subunit YidCRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS3985417 1647 + 0.540376
yohG SC2188 putative Outer membrane efflux proteinSubName: Full=Putative Outer membrane efflux protein; chromosome CDS2291343 1437 - 0.576896
yrfC SC3423 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS3598704 540 - 0.588889