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2024-04-29 10:43:16

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Phage Gifsy-1

Number of genes found: 131

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Phage Gifsy-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC0364 TPA: injection proteinchromosome CDS405723 1914 + 0.512539
NA SC4136 putative inner membrane or exportedchromosome CDS4412474 633 + 0.338073
NA SC3843 possible exported proteinchromosome CDS4085554 231 - 0.47619
NA SC4138 putative ABC exporter outer membrane component homologchromosome CDS4414481 1320 + 0.366667
NA SC2693 putative outer membrane efflux proteinchromosome CDS2856293 1410 + 0.568794
NA SC0341 orf, partial conserved hypothetical proteinchromosome CDS385342 1881 + 0.509835
NA SC2506 hypothetical proteinchromosome CDS2640508 2379 - 0.499369
bcfA SC0020 fimbrial subunitchromosome CDS24470 543 + 0.521179
bcfB SC0021 fimbrial chaparonechromosome CDS24972 828 + 0.509662
bcfD SC0022 fimbrial subunitchromosome CDS28426 1008 + 0.501984
bcfE SC0023 fimbrial subunitchromosome CDS29434 546 + 0.492674
bcfF SC0024 fimbrial subunitchromosome CDS29995 519 + 0.558767
bcfG SC0025 fimbrial chaparonechromosome CDS30479 732 + 0.54235
ccmD SC2256 heme exporter protein C, cytochrome c-type biogenesis proteinchromosome CDS2365675 213 - 0.694836
clpP SC0490 proteolytic subunit of clpA-clpP ATP-dependent serine protease, heat shock protein F215chromosome CDS547451 741 + 0.496626
cpxP SC3951 periplasmic repressor of cpx regulon by interaction with CpxA, rescue from transitory stresseschromosome CDS4203638 501 + 0.50499
dspP SC3615 putative inner membrane proteinchromosome CDS3823775 4341 + 0.528219
exbB SC3101 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3279443 732 - 0.547814
exbD SC3100 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3279034 426 - 0.507042
ffh SC2678 45S-RNP protein, GTP binding export factor, part of signal recognition particle with 4.5 RNAchromosome CDS2834378 1362 - 0.550661
fimA SC0582 major type 1 subunit fimbrin (pilin)chromosome CDS648395 624 + 0.533654
fimD SC0585 outer membrane usher proteinchromosome CDS651732 2619 + 0.556319
fimF SC0587 putative fimbrial proteinchromosome CDS655382 519 + 0.552987
fimF SC4440 putative fimbrial chaparone proteinchromosome CDS4751117 546 - 0.501832
fimH SC0586 minor fimbrial subunitchromosome CDS654365 1008 + 0.516865
fimI SC0583 fimbrial protein internal segmentchromosome CDS649094 534 + 0.543071
flgM SC1119 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1237100 294 - 0.517007
flgN SC1118 flagellar biosynthesis: belived to be export chaperone for FlgK and FlgLchromosome CDS1236673 423 - 0.539007
flhA SC1920 flagellar biosynthesis; possible export of flagellar proteinschromosome CDS2030792 2079 - 0.562771
flhB SC1921 putative part of export apparatus for flagellar proteinschromosome CDS2032863 1152 - 0.560764
fliE SC1972 putative Flagellar hook-basal body proteinchromosome CDS2077769 315 - 0.546032
fliF SC1974 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinchromosome CDS2078300 1683 + 0.571004
fliH SC1976 flagellar biosynthesis; possible export of flagellar proteinschromosome CDS2080963 708 + 0.607345
fliI SC1977 flagellum-specific ATP synthasechromosome CDS2081670 1371 + 0.596645
fliJ SC1978 flagellar fliJ proteinchromosome CDS2083062 444 + 0.513514
fliN SC1982 flagellar biosynthesis, component of motor switch and energizingchromosome CDS2086297 414 + 0.543478
fliP SC1984 flagellar biosynthesischromosome CDS2087087 738 + 0.536585
fliQ SC1985 flagellar biosynthesischromosome CDS2087834 270 + 0.518519
fliR SC1986 putative flagellar biosynthetic proteinchromosome CDS2088112 795 + 0.515723
fliS SC1965 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)chromosome CDS2072592 408 + 0.495098
ftsY SC3500 GTPase domain of cell division membrane proteinchromosome CDS3692860 1476 - 0.552846
hofB SC0142 putative integral membrane protein involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptakechromosome CDS162377 1386 - 0.553391
hofC SC0141 putative component in type IV pilin biogenesischromosome CDS161185 1203 - 0.540316
hofQ SC3420 putative transport protein, possibly in biosynthesis of type IV pilinchromosome CDS3596703 1239 - 0.569814
hopD SC3376 leader peptidase HopDchromosome CDS3551227 594 + 0.521886
invA SC2828 invasion proteinchromosome CDS2991928 2058 - 0.455782
invC SC2826 surface presentation of antigens; secretory proteinschromosome CDS2990205 1296 - 0.544753
invG SC2830 invasion protein; outer membranechromosome CDS2995125 1689 - 0.462404
lepB SC2577 leader peptidase (signal peptidase I), serine proteasechromosome CDS2746242 975 - 0.531282
lpfA SC3571 long polar fimbriachromosome CDS3778230 537 - 0.463687
lpfB SC3570 long polar fimbrial chaperonechromosome CDS3777447 699 - 0.449213
lpfE SC3568 long polar fimbrial minor proteinchromosome CDS3773266 528 - 0.511364
lspA SC0041 prolipoprotein signal peptidase (SPase II)chromosome CDS50943 501 + 0.528942
mac SC4137 putative methyl-accepting chemotaxis proteinchromosome CDS4413103 1389 + 0.366451
marC SC1539 putative MarC Transporter, multiple antibiotic resistance proteinchromosome CDS1636338 666 + 0.534535
misL SC3678 putative autotransported proteinchromosome CDS3893274 2868 + 0.529637
oprM SC0393 outer membrane efflux protein-like proteinchromosome CDS436959 1458 - 0.595336
orgB SC2801 putative flagellar biosynthesis/type III secretory pathway proteinchromosome CDS2967315 681 - 0.449339
ppdB SC2937 prepilin peptidase dependent protein B, putative component in type IV pilin biogenesischromosome CDS3116501 564 - 0.533688
ppdD SC0143 putative major component of type IV pilin, prelipin peptidase dependent proteinchromosome CDS163772 438 - 0.541096
prgK SC2803 cell invasion protein; lipoprotein, may link inner and outer membraneschromosome CDS2968523 759 - 0.455863
safB SC0293 putative fimbriae assembly chaparonechromosome CDS337447 738 + 0.47832
safC SC0294 putative fimbriae usherchromosome CDS338208 2511 + 0.543608
secA SC0133 preprotein translocase; secretion protein of IISP familychromosome CDS153022 2706 + 0.538803
secB SC3624 molecular chaperone in protein exportchromosome CDS3838539 468 - 0.508547
secD SC0449 preprotein translocase, IISP family, part of the channelchromosome CDS506823 1848 + 0.546537
secE SC4031 preprotein translocase IISP family, membrane subunitchromosome CDS4296034 384 + 0.554688
secF SC0450 preprotein translocase, IISP family, membrane subunitchromosome CDS508681 972 + 0.54321
secG SC3232 preprotein translocase IISP family, auxillary membrane componentchromosome CDS3416591 528 - 0.496212
secY SC3354 preprotein translocase of IISP family, membrane subunit, putative ATPasechromosome CDS3540470 1332 - 0.495495
sipC SC2816 cell invasion proteinchromosome CDS2981385 1230 - 0.474797
smf SC3341 putative protein involved in DNA uptakechromosome CDS3530122 1125 - 0.539556
sohB SC1713 putative peptidasechromosome CDS1826217 1047 - 0.543458
spaO SC2823 surface presentation of antigens; secretory proteinschromosome CDS2987863 912 - 0.529605
spaP SC2822 surface presentation of antigens; secretory proteinschromosome CDS2987199 675 - 0.419259
spaQ SC2821 surface presentation of antigens; secretory proteinschromosome CDS2986913 261 - 0.467433
spaR SC2820 surface presentation of antigens; secretory proteinschromosome CDS2986118 792 - 0.5
spaS SC2819 surface presentation of antigens; secretory proteinschromosome CDS2985061 1071 - 0.434174
sppA SC1317 protease IV, a signal peptide peptidasechromosome CDS1413896 1857 - 0.559505
spy SC1329 periplasmic protein related to spheroblast formationchromosome CDS1427220 486 + 0.5
ssaC SC1415 Secretion system apparatus SsaCchromosome CDS1518145 1494 + 0.421687
ssaJ SC1430 Secretion system apparatus SsaJchromosome CDS1527965 750 + 0.418667
ssaN SC1436 Secretion system apparatus SsaNchromosome CDS1533379 1302 + 0.510753
ssaQ SC1439 Secretion system apparatus SsaQchromosome CDS1535396 969 + 0.457172
ssaR SC1440 Secretion system apparatus SsaRchromosome CDS1536432 648 + 0.430556
ssaS SC1441 Secretion system apparatus SsaSchromosome CDS1537076 267 + 0.426966
ssaT SC1442 Secretion system apparatus SsaTchromosome CDS1537343 780 + 0.389744
ssaU SC1443 Secretion system apparatus SsaUchromosome CDS1538119 1059 + 0.396601
ssaV SC1435 Secretion system apparatus SsaVchromosome CDS1531344 2046 + 0.466276
stbA SC0383 putative fimbriae; major subunitchromosome CDS428942 537 - 0.47486
stbB SC0382 putative fimbriae; chaparonechromosome CDS428119 762 - 0.454068
stbC SC0381 putative fimbriae; usherchromosome CDS425574 2562 - 0.540593
stcB SC2166 putative periplasmic chaperone proteinchromosome CDS2268875 753 - 0.403718
stcC SC2165 paral putative outer membrane proteinchromosome CDS2266372 2490 - 0.457831
stdA SC2969 putative fimbrial-like proteinchromosome CDS3149971 711 - 0.488045
stdB SC2968 putative outer membrane usher proteinchromosome CDS3147362 2490 - 0.608032
stdC SC2967 putative fimbrial chaparone proteinchromosome CDS3146578 744 - 0.584677
steB SC2890 outer membrane usher proteinchromosome CDS3056123 2700 + 0.553704
stf SC1236 side tail fiber proteinchromosome CDS1346171 2679 + 0.549459
stfA SC0195 putative fimbrial subunitchromosome CDS226764 561 + 0.515152
stfC SC0196 putative fimbrial outer membrane usherchromosome CDS227410 2658 + 0.55079
stfD SC0197 putative periplasmic fimbrial chaperonechromosome CDS230085 753 + 0.543161
stfD SC2891 putative periplasmic fimbrial chaperonechromosome CDS3058835 774 + 0.549096
stfE SC0198 putaive minor fimbrial subunitchromosome CDS230856 513 + 0.559454
sthA SC4439 putative fimbrial chaparone proteinchromosome CDS4750363 684 - 0.457602
sthB SC4438 putative fimbrial usher proteinchromosome CDS4747780 2538 - 0.469661
sthD SC4437 putative fimbrial subunitchromosome CDS4747205 558 - 0.501792
sthE SC4436 putative major fimbrial subunitchromosome CDS4746079 1086 - 0.519337
stiA SC0177 putative fimbrial subunitchromosome CDS204490 540 - 0.524074
stiB SC0176 putative fimbrial chaparonechromosome CDS203759 684 - 0.533626
stiC SC0175 putativie fimbrial usherchromosome CDS201189 2544 - 0.553852
tatA SC3871 component of Sec-independent protein secretion pathwaychromosome CDS4114736 255 + 0.458824
tatB SC3872 component of Sec-independent protein secretion pathwaychromosome CDS4114994 549 + 0.540984
tatC SC3873 part of sec-independent protein export, integral membrane proteinchromosome CDS4115545 780 + 0.505128
tctB SC2719 tricarboxylic transportchromosome CDS2890262 435 + 0.574713
tolB SC0752 tol protein required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiproteichromosome CDS844978 1293 + 0.556071
tolC SC3130 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes, role in organic solvent tolerancechromosome CDS3309329 1476 + 0.523713
tolQ SC0749 tol protein, membrane-spanning inner membrane proteins, required for outer membrane integrity, uptake of group A colicins, and translocation of phagechromosome CDS842505 693 + 0.525253
tolR SC0750 tol protein, role in outer membrane integrity, uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasmchromosome CDS843201 429 + 0.508159
vg05 SC1218 Gifsy-1 prophage head-tail preconnector gp5chromosome CDS1329539 1497 + 0.566466
virG SC0308 similar to Shigella VirG proteinchromosome CDS354962 408 - 0.470588
yaiU SC0414 flagellar proteinchromosome CDS469709 2886 + 0.452876
yajC SC0448 preprotein translocase IISP family, membrane subunitchromosome CDS506463 333 + 0.51952
ybbJ SC0541 putative Membrane protein implicated in regulation of membrane protease activitychromosome CDS605330 453 - 0.600442
ybeC SC0661 putative Sec-independent protein secretion pathway componentchromosome CDS737120 204 + 0.495098
ychE SC1743 putative integral membrane proteins of the MarC familychromosome CDS1855130 648 - 0.507716
yfcP SC2894 fimbrial subunitchromosome CDS3060616 537 + 0.52514
yggR SC3039 putative protein transportchromosome CDS3219437 981 - 0.571865
yidC SC3759 putative Preprotein translocase subunit YidCchromosome CDS3985417 1647 + 0.540376
yohG SC2188 putative Outer membrane efflux proteinchromosome CDS2291343 1437 - 0.576896
yrfC SC3423 putative inner membrane proteinchromosome CDS3598704 540 - 0.588889