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Gene list

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COG category: Intracellular trafficking and secretion
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 138

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Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO0810 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; chromosome CDS875259 501 - 0.572854
NA PSPTO4305 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS4854807 1461 + 0.622177
NA PSPTO3363 type II and III secretion system family proteinSubName: Full=Type II and III secretion system family protein; chromosome CDS3801024 747 + 0.574297
NA PSPTO3227 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS3628302 129 - 0.596899
NA PSPTO0319 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; chromosome CDS345891 1785 - 0.611205
NA PSPTO4853 type II/IV secretion system protein, putativeSubName: Full=Type II/IV secretion system protein, putative; chromosome CDS5498405 1257 + 0.618934
NA PSPTO4850 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5494865 1074 + 0.623836
NA PSPTO4869 membrane protein, MarC familySubName: Full=Membrane protein, MarC family; chromosome CDS5517061 597 + 0.582915
NA PSPTO1805 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1976521 465 - 0.593548
NA PSPTO2227 fimbrial protein, putativeSubName: Full=Fimbrial protein, putative; chromosome CDS2454099 1113 - 0.565139
NA PSPTO2728 peptidase, U7 familySubName: Full=Peptidase, U7 family; chromosome CDS3025774 1023 + 0.585533
NA PSPTO0175 DNA processing protein DprA, putativeSubName: Full=DNA processing protein DprA, putative; chromosome CDS196084 1185 - 0.643882
NA PSPTOA0029 relaxase/mobilization nuclease MobA, putativeSubName: Full=Relaxase/mobilization nuclease MobA, putative; pDC3000A CDS27739 1953 + 0.548387
NA PSPTO0816 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; chromosome CDS881303 402 + 0.562189
NA PSPTO1646 LysM domain proteinSubName: Full=LysM domain protein; chromosome CDS1803599 2154 + 0.634169
NA PSPTO3229 filamentous hemagglutinin, intein-containing, putativeSubName: Full=Filamentous hemagglutinin, intein-containing, putative; chromosome CDS3629677 18825 - 0.601062
NA PSPTO0270 biopolymer transport protein ExbB, putativeSubName: Full=Biopolymer transport protein ExbB, putative; chromosome CDS296091 708 - 0.627119
NA PSPTO0860 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS932028 456 - 0.578947
NA PSPTO1093 relaxase/mobilization nuclease domain proteinSubName: Full=Relaxase/mobilization nuclease domain protein; chromosome CDS1201509 2418 + 0.527709
NA PSPTO1925 negative regulator of flagellin synthesis FlgM, putativeSubName: Full=Negative regulator of flagellin synthesis FlgM, putative; chromosome CDS2107909 315 - 0.536508
NA PSPTO3310 general secretion pathway protein L, putativeSubName: Full=General secretion pathway protein L, putative; chromosome CDS3743950 1065 - 0.630047
NA PSPTO1023 MotA/TolQ/ExbB proton channel family proteinSubName: Full=MotA/TolQ/ExbB proton channel family protein; chromosome CDS1116554 549 + 0.626594
NA PSPTO3847 MotA/TolQ/ExbB proton channel family proteinSubName: Full=MotA/TolQ/ExbB proton channel family protein; chromosome CDS4354331 645 - 0.603101
NA PSPTO1960 flagellar assembly protein Flih, putativeSubName: Full=Flagellar assembly protein Flih, putative; chromosome CDS2147493 819 + 0.586081
NA PSPTOA0045 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; pDC3000A CDS44550 1182 + 0.586294
NA PSPTO0814 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS877595 507 + 0.540434
NA PSPTO1217 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS1332394 1497 + 0.639947
NA PSPTO5612 inner membrane protein, 60 kDaRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS6394400 1689 - 0.556542
NA PSPTO0377 metal ion efflux outer membrane protein, putativeSubName: Full=Metal ion efflux outer membrane protein, putative; chromosome CDS417062 1227 - 0.647107
NA PSPTO4297 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS4844667 363 + 0.597796
NA PSPTO0813 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS876876 708 + 0.538136
NA PSPTO3101 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS3487584 1398 + 0.636624
NA PSPTO4855 membrane protein, putativeSubName: Full=Membrane protein, putative; chromosome CDS5500569 885 + 0.60339
NA PSPTO4849 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5494451 207 - 0.497585
NA PSPTO4854 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5499680 888 + 0.621622
NA PSPTO3230 hemolysin activator protein, HlyB familySubName: Full=Hemolysin activator protein, HlyB family; chromosome CDS3648541 1710 - 0.607018
NA PSPTO2158 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS2369567 1404 - 0.638177
NA PSPTO1313 pili assembly chaperoneSubName: Full=Pili assembly chaperone; chromosome CDS1444523 753 + 0.549801
NA PSPTO3992 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4501785 1335 + 0.604494
NA PSPTO2011 autotransporter, putativeSubName: Full=Autotransporter, putative; chromosome CDS2196049 2310 + 0.562338
NA PSPTO3621 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS4083582 1434 + 0.635286
NA PSPTO1312 fimbral biosynthesis proteinSubName: Full=Fimbral biosynthesis protein; chromosome CDS1443875 585 + 0.547009
NA PSPTO2756 outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS3069220 1473 + 0.635438
NA PSPTO2225 autotransporter, putativeSubName: Full=Autotransporter, putative; chromosome CDS2450057 2322 + 0.594315
NA PSPTO0269 biopolymer transport protein ExbD, putativeSubName: Full=Biopolymer transport protein ExbD, putative; chromosome CDS295690 402 - 0.572139
NA PSPTO5125 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5832123 1626 - 0.624231
NA PSPTO2763 autotransporter, putativeSubName: Full=Autotransporter, putative; chromosome CDS3081957 2784 - 0.616738
NA PSPTO0927 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; chromosome CDS1007206 429 + 0.470862
NA PSPTO0811 pillin, putativeSubName: Full=Pillin, putative; chromosome CDS875891 474 + 0.57173
NA PSPTO_B0036 relaxase/mobilization nuclease MobA, putativeSubName: Full=Relaxase/mobilization nuclease MobA, putative; pDC3000B CDS28470 1956 + 0.547035
NA PSPTO0848 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS916412 1374 - 0.577147
NA PSPTO3818 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4325920 2844 - 0.616385
NA PSPTO4977 outer membrane efflux protein TolC, putativeSubName: Full=Outer membrane efflux protein TolC, putative; chromosome CDS5648897 1440 + 0.621528
NA PSPTO3313 general secretion pathway protein I, putativeSubName: Full=General secretion pathway protein I, putative; chromosome CDS3746371 384 - 0.625
NA PSPTO3210 filamentous haemagglutinin family proteinSubName: Full=Filamentous hemagglutinin family protein; chromosome CDS3604010 2976 - 0.553763
NA PSPTO0815 type IV pilus-associated protein, putativeSubName: Full=Type IV pilus-associated protein, putative; chromosome CDS878088 3204 + 0.551498
NA PSPTO1317 fimbral chaperone proteinSubName: Full=Fimbral chaperone protein; chromosome CDS1449166 783 + 0.607918
NA PSPTO1012 TonB system transport proteinSubName: Full=TonB system transport protein; chromosome CDS1106014 408 + 0.546569
NA PSPTO4856 TPR domain proteinSubName: Full=TPR domain protein; chromosome CDS5501495 753 + 0.621514
NA PSPTO3033 twitching motility proteinSubName: Full=Twitching motility protein; chromosome CDS3409902 1176 - 0.591837
NA PSPTO4006 tail fiber protein H, putativeSubName: Full=Tail fiber protein H, putative; chromosome CDS4518980 2427 - 0.597445
NA PSPTO4852 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS5497215 1191 + 0.633081
NA PSPTO5045 twitching motility proteinSubName: Full=Twitching motility protein; chromosome CDS5744794 1035 - 0.606763
NA PSPTO3846 biopolymer transport protein ExbD/TolR familySubName: Full=Biopolymer transport protein ExbD/TolR family; chromosome CDS4353903 432 - 0.592593
NA PSPTO_B0052 type IV pilus biogenesis proteinSubName: Full=Type IV pilus biogenesis protein; pDC3000B CDS39856 1182 + 0.58714
NA PSPTO4209 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4742177 672 - 0.587798
NA PSPTO4851 bacterial type II/III secretion system proteinSubName: Full=Bacterial type II/III secretion system protein; chromosome CDS5495959 1260 + 0.624603
NA PSPTO1962 flagellar protein FliJ, putativeSubName: Full=Flagellar protein FliJ, putative; chromosome CDS2149666 450 + 0.611111
ccmD PSPTO3632 heme exporter protein CcmDSubName: Full=Heme exporter protein CcmD; chromosome CDS4093021 177 - 0.610169
clpP-1 PSPTO3409 ATP-dependent Clp protease, proteolytic subunit ClpPSubName: Full=ATP-dependent Clp protease, proteolytic subunit ClpP; chromosome CDS3847007 1146 - 0.619546
clpP-2 PSPTO3726 ATP-dependent Clp protease, proteolytic subunit ClpPRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS4208232 651 - 0.572965
exbB-1 PSPTO0069 TonB system transport protein ExbBSubName: Full=TonB system transport protein ExbB; chromosome CDS91543 957 - 0.626959
exbB-2 PSPTO0673 TonB system transport protein ExbBSubName: Full=TonB system transport protein ExbB; chromosome CDS728838 693 - 0.623377
exbB-3 PSPTO2482 TonB system transport protein ExbBSubName: Full=TonB system transport protein ExbB; chromosome CDS2742562 729 + 0.620027
exbD-1 PSPTO0068 TonB system transport protein ExbDSubName: Full=TonB system transport protein ExbD; chromosome CDS91114 426 - 0.596244
exbD-2 PSPTO0672 TonB system transport protein ExbDSubName: Full=TonB system transport protein ExbD; chromosome CDS728432 405 - 0.632099
exbD-3 PSPTO2483 TonB system transport protein ExbDSubName: Full=TonB system transport protein ExbD; chromosome CDS2743322 372 + 0.580645
ffh PSPTO1472 signal recognition particle protein FfhRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS1617559 1377 + 0.603486
fimA PSPTO2230 type I pilus biogensis protein FimASubName: Full=Type I pilus biogensis protein FimA; chromosome CDS2458675 552 - 0.592391
fimD PSPTO2228 outer membrane usher protein fimDSubName: Full=Outer membrane usher protein fimD; chromosome CDS2455258 2514 - 0.59825
flhA PSPTO1976 flagellar biosynthesis protein FlhASubName: Full=Flagellar biosynthesis protein FlhA; chromosome CDS2160485 2130 + 0.585916
flhB PSPTO1975 flagellar biosynthetic protein FlhBSubName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS2158962 1137 + 0.591029
fliE PSPTO1957 flagellar hook-basal body complex protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2144312 357 + 0.54902
fliF PSPTO1958 flagellar M-ring protein FliFRecName: Full=Flagellar M-ring protein; chromosome CDS2144684 1785 + 0.602241
fliI PSPTO1961 flagellum-specific ATP synthase FliISubName: Full=Flagellum-specific ATP synthase FliI; chromosome CDS2148301 1359 + 0.640177
fliN PSPTO1970 flagellar motor switch protein FliNSubName: Full=Flagellar motor switch protein FliN; chromosome CDS2156222 459 + 0.605664
fliP PSPTO1972 flagellar biosynthetic protein FliPSubName: Full=Flagellar biosynthetic protein FliP; chromosome CDS2157121 753 + 0.569721
fliQ PSPTO1973 flagellar biosynthetic protein FliQSubName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS2157899 270 + 0.585185
fliR PSPTO1974 flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS2158184 777 + 0.594595
fliS PSPTO1952 flagellar protein FliSSubName: Full=Flagellar protein FliS; chromosome CDS2138982 390 + 0.582051
ftsY PSPTO0427 signal recognition particle-docking protein FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS472419 1542 + 0.609598
gspD PSPTO3307 general secretion pathway protein DSubName: Full=General secretion pathway protein D; chromosome CDS3740495 2292 - 0.608639
gspE PSPTO3317 general secretion pathway protein ESubName: Full=General secretion pathway protein E; chromosome CDS3748853 1758 - 0.624005
gspF PSPTO3316 general secretion pathway protein FSubName: Full=General secretion pathway protein F; chromosome CDS3747654 1203 - 0.627598
gspG PSPTO3315 general secretion pathway protein GSubName: Full=General secretion pathway protein G; chromosome CDS3747197 432 - 0.587963
gspH PSPTO3314 general secretion pathway protein HSubName: Full=General secretion pathway protein H; chromosome CDS3746754 435 - 0.62069
hrcC PSPTO1389 outer-membrane type III secretion protein HrcC chromosome CDS1529049 1941 + 0.578568
hrcJ PSPTO1384 type III secretion protein HrcJSubName: Full=Type III secretion protein HrcJ; chromosome CDS1526201 807 + 0.592317
hrcN PSPTO1400 type III secretion cytoplasmic ATPase HrcNRecName: Full=Type III secretion ATP synthase HrcN; EC=3.6.3.14; chromosome CDS1537029 1350 - 0.653333
hrcQb PSPTO1396 type III secretion protein HrcQbRecName: Full=Type III secretion protein HrcQb; chromosome CDS1534888 414 - 0.60628
hrcR PSPTO1395 type III secretion protein HrcRSubName: Full=Type III secretion protein HrcR; chromosome CDS1534238 603 - 0.580431
hrcS PSPTO1394 type III secretion protein HrcSSubName: Full=Type III secretion protein HrcS; chromosome CDS1533964 267 - 0.580524
hrcT PSPTO1393 type III secretion protein HrcTSubName: Full=Type III secretion protein HrcT; chromosome CDS1533169 795 - 0.608805
hrcU PSPTO1392 type III secretion protein HrcUSubName: Full=Type III secretion protein HrcU; chromosome CDS1532093 1080 - 0.571296
hrcV PSPTO1402 type III secretion protein HrcVSubName: Full=Type III secretion protein HrcV; chromosome CDS1539401 2088 - 0.597222
hrpW1 PSPTO1373 type III helper protein HrpW1SubName: Full=Type III helper protein HrpW1; chromosome CDS1509390 1275 - 0.579608
lepB PSPTO4219 signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS4751478 855 - 0.567251
lspA PSPTO0807 lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS873231 522 + 0.584291
nfrB PSPTO1194 bacteriophage N4 adsorption protein BSubName: Full=Bacteriophage N4 adsorption protein B; chromosome CDS1307737 2121 - 0.602546
papD PSPTO2229 chaperone protein PapDSubName: Full=Chaperone protein PapD; chromosome CDS2457811 756 - 0.582011
pilB PSPTO0926 type IV pilus biogenesis protein PilBSubName: Full=Type IV pilus biogenesis protein PilB; chromosome CDS1005287 1695 - 0.543363
pilC PSPTO0925 type IV pilus biogenesis protein PilCSubName: Full=Type IV pilus biogenesis protein PilC; chromosome CDS1004067 1218 - 0.478654
pilD PSPTO0924 type IV pilus prepilin peptidase PilDRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome CDS1003193 873 - 0.592211
pilF PSPTO1432 type IV pilus biogenesis protein PilFSubName: Full=Type IV pilus biogenesis protein PilF; chromosome CDS1569793 759 + 0.561265
pilM PSPTO5132 type IV pilus biogenesis protein PilMSubName: Full=Type IV pilus biogenesis protein PilM; chromosome CDS5839427 1065 - 0.588732
pilN PSPTO5131 type IV pilus biogenesis protein PilNSubName: Full=Type IV pilus biogenesis protein PilN; chromosome CDS5838801 627 - 0.596491
pilO PSPTO5130 type IV pilus biogenesis protein PilOSubName: Full=Type IV pilus biogenesis protein PilO; chromosome CDS5838181 624 - 0.564103
pilP PSPTO5129 type IV pilus biogenesis protein PilPSubName: Full=Type IV pilus biogenesis protein PilP; chromosome CDS5837657 528 - 0.600379
pilQ PSPTO5128 type IV pilus biogenesis protein PilQSubName: Full=Type IV pilus biogenesis protein PilQ; chromosome CDS5835504 2157 - 0.589708
pilZ PSPTO3825 type IV pilus biogenesis protein PilZSubName: Full=Type IV pilus biogenesis protein PilZ; chromosome CDS4333852 357 - 0.593838
secA PSPTO4400 preprotein translocase, SecA subunitRecName: Full=Protein translocase subunit SecA; chromosome CDS4964661 2742 - 0.579504
secB PSPTO5324 protein-export protein SecBRecName: Full=Protein-export protein SecB; chromosome CDS6052712 495 - 0.579798
secD PSPTO1415 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS1554625 1869 + 0.59176
secE PSPTO0613 preprotein translocase, SecE subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS674963 369 + 0.512195
secF PSPTO1416 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS1556503 912 + 0.594298
secG PSPTO4493 preprotein translocase, SecG subunitSubName: Full=Preprotein translocase, SecG subunit; chromosome CDS5061595 381 - 0.506562
secY PSPTO0646 preprotein translocase, SecY subunitRecName: Full=Protein translocase subunit SecY; chromosome CDS700726 1335 + 0.549813
sppA PSPTO3838 signal peptide peptidase SppA, 36K typeSubName: Full=Signal peptide peptidase SppA, 36K type; chromosome CDS4343921 999 - 0.570571
tatA PSPTO5155 sec-independent protein translocase TatARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS5864849 276 + 0.59058
tatB PSPTO5156 sec-independent protein translocase TatBRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS5865129 462 + 0.62987
tatC PSPTO5157 sec-independent protein translocase TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS5865587 801 + 0.583021
tliF PSPTO3328 ABC transporter, permease proteinSubName: Full=ABC transporter, permease protein; chromosome CDS3763908 1371 - 0.599562
tolB PSPTO3972 tolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS4479461 1302 - 0.557604
tolQ-1 PSPTO3240 tolQ proteinSubName: Full=TolQ protein; chromosome CDS3660863 711 - 0.620253
tolQ-2 PSPTO3975 tolQ proteinSubName: Full=TolQ protein; chromosome CDS4482308 696 - 0.58046
tolR-1 PSPTO3239 tolR proteinSubName: Full=TolR protein; chromosome CDS3660407 447 - 0.612975
tolR-2 PSPTO3974 tolR proteinSubName: Full=TolR protein; chromosome CDS4481829 465 - 0.554839
yajC PSPTO1414 preprotein translocase, YajC subunitSubName: Full=Preprotein translocase, YajC subunit; chromosome CDS1554227 336 + 0.556548