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2024-05-07 09:32:17

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Pseudomonas syringae pv. tomato str. DC3000, DC3000

Number of genes found: 138

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas syringae pv. tomato str. DC3000, DC3000
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPTO1217 outer membrane efflux proteinchromosome CDS1332394 1497 + 0.639947
NA PSPTO3846 biopolymer transport protein ExbD/TolR familychromosome CDS4353903 432 - 0.592593
NA PSPTO0815 type IV pilus-associated protein, putativechromosome CDS878088 3204 + 0.551498
NA PSPTO3818 conserved hypothetical proteinchromosome CDS4325920 2844 - 0.616385
NA PSPTO0927 type IV pilus biogenesis proteinchromosome CDS1007206 429 + 0.470862
NA PSPTO0270 biopolymer transport protein ExbB, putativechromosome CDS296091 708 - 0.627119
NA PSPTO1012 TonB system transport proteinchromosome CDS1106014 408 + 0.546569
NA PSPTO2227 fimbrial protein, putativechromosome CDS2454099 1113 - 0.565139
NA PSPTO3847 MotA/TolQ/ExbB proton channel family proteinchromosome CDS4354331 645 - 0.603101
NA PSPTO2728 peptidase, U7 familychromosome CDS3025774 1023 + 0.585533
NA PSPTO3230 hemolysin activator protein, HlyB familychromosome CDS3648541 1710 - 0.607018
NA PSPTO_B0052 type IV pilus biogenesis proteinpDC3000B CDS39856 1182 + 0.58714
NA PSPTO2158 outer membrane efflux proteinchromosome CDS2369567 1404 - 0.638177
NA PSPTO0269 biopolymer transport protein ExbD, putativechromosome CDS295690 402 - 0.572139
NA PSPTO0813 hypothetical proteinchromosome CDS876876 708 + 0.538136
NA PSPTO2763 autotransporter, putativechromosome CDS3081957 2784 - 0.616738
NA PSPTO2756 outer membrane efflux proteinchromosome CDS3069220 1473 + 0.635438
NA PSPTO4305 outer membrane efflux proteinchromosome CDS4854807 1461 + 0.622177
NA PSPTOA0045 type IV pilus biogenesis proteinpDC3000A CDS44550 1182 + 0.586294
NA PSPTO2225 autotransporter, putativechromosome CDS2450057 2322 + 0.594315
NA PSPTO0860 conserved hypothetical proteinchromosome CDS932028 456 - 0.578947
NA PSPTO1317 fimbral chaperone proteinchromosome CDS1449166 783 + 0.607918
NA PSPTO1805 conserved hypothetical proteinchromosome CDS1976521 465 - 0.593548
NA PSPTO0811 pillin, putativechromosome CDS875891 474 + 0.57173
NA PSPTO5612 inner membrane protein, 60 kDachromosome CDS6394400 1689 - 0.556542
NA PSPTO4850 conserved hypothetical proteinchromosome CDS5494865 1074 + 0.623836
NA PSPTO4297 conserved domain proteinchromosome CDS4844667 363 + 0.597796
NA PSPTO1960 flagellar assembly protein Flih, putativechromosome CDS2147493 819 + 0.586081
NA PSPTO1023 MotA/TolQ/ExbB proton channel family proteinchromosome CDS1116554 549 + 0.626594
NA PSPTO4851 bacterial type II/III secretion system proteinchromosome CDS5495959 1260 + 0.624603
NA PSPTO3210 filamentous haemagglutinin family proteinchromosome CDS3604010 2976 - 0.553763
NA PSPTO4006 tail fiber protein H, putativechromosome CDS4518980 2427 - 0.597445
NA PSPTO0377 metal ion efflux outer membrane protein, putativechromosome CDS417062 1227 - 0.647107
NA PSPTO0175 DNA processing protein DprA, putativechromosome CDS196084 1185 - 0.643882
NA PSPTO1646 LysM domain proteinchromosome CDS1803599 2154 + 0.634169
NA PSPTO4855 membrane protein, putativechromosome CDS5500569 885 + 0.60339
NA PSPTO3313 general secretion pathway protein I, putativechromosome CDS3746371 384 - 0.625
NA PSPTO1962 flagellar protein FliJ, putativechromosome CDS2149666 450 + 0.611111
NA PSPTO4853 type II/IV secretion system protein, putativechromosome CDS5498405 1257 + 0.618934
NA PSPTO4869 membrane protein, MarC familychromosome CDS5517061 597 + 0.582915
NA PSPTO0816 type IV pilus biogenesis proteinchromosome CDS881303 402 + 0.562189
NA PSPTO5045 twitching motility proteinchromosome CDS5744794 1035 - 0.606763
NA PSPTO1312 fimbral biosynthesis proteinchromosome CDS1443875 585 + 0.547009
NA PSPTO0814 conserved hypothetical proteinchromosome CDS877595 507 + 0.540434
NA PSPTO5125 conserved hypothetical proteinchromosome CDS5832123 1626 - 0.624231
NA PSPTO3310 general secretion pathway protein L, putativechromosome CDS3743950 1065 - 0.630047
NA PSPTO3101 outer membrane efflux proteinchromosome CDS3487584 1398 + 0.636624
NA PSPTO4856 TPR domain proteinchromosome CDS5501495 753 + 0.621514
NA PSPTO4209 hypothetical proteinchromosome CDS4742177 672 - 0.587798
NA PSPTOA0029 relaxase/mobilization nuclease MobA, putativepDC3000A CDS27739 1953 + 0.548387
NA PSPTO1313 pili assembly chaperonechromosome CDS1444523 753 + 0.549801
NA PSPTO0319 type IV pilus biogenesis proteinchromosome CDS345891 1785 - 0.611205
NA PSPTO3621 outer membrane efflux proteinchromosome CDS4083582 1434 + 0.635286
NA PSPTO4852 conserved hypothetical proteinchromosome CDS5497215 1191 + 0.633081
NA PSPTO_B0036 relaxase/mobilization nuclease MobA, putativepDC3000B CDS28470 1956 + 0.547035
NA PSPTO3033 twitching motility proteinchromosome CDS3409902 1176 - 0.591837
NA PSPTO0810 type IV pilus biogenesis proteinchromosome CDS875259 501 - 0.572854
NA PSPTO4854 conserved hypothetical proteinchromosome CDS5499680 888 + 0.621622
NA PSPTO3229 filamentous hemagglutinin, intein-containing, putativechromosome CDS3629677 18825 - 0.601062
NA PSPTO3227 conserved domain proteinchromosome CDS3628302 129 - 0.596899
NA PSPTO3992 conserved hypothetical proteinchromosome CDS4501785 1335 + 0.604494
NA PSPTO4849 conserved hypothetical proteinchromosome CDS5494451 207 - 0.497585
NA PSPTO1925 negative regulator of flagellin synthesis FlgM, putativechromosome CDS2107909 315 - 0.536508
NA PSPTO0848 conserved hypothetical proteinchromosome CDS916412 1374 - 0.577147
NA PSPTO3363 type II and III secretion system family proteinchromosome CDS3801024 747 + 0.574297
NA PSPTO4977 outer membrane efflux protein TolC, putativechromosome CDS5648897 1440 + 0.621528
NA PSPTO2011 autotransporter, putativechromosome CDS2196049 2310 + 0.562338
NA PSPTO1093 relaxase/mobilization nuclease domain proteinchromosome CDS1201509 2418 + 0.527709
ccmD PSPTO3632 heme exporter protein CcmDchromosome CDS4093021 177 - 0.610169
clpP-1 PSPTO3409 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS3847007 1146 - 0.619546
clpP-2 PSPTO3726 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS4208232 651 - 0.572965
exbB-1 PSPTO0069 TonB system transport protein ExbBchromosome CDS91543 957 - 0.626959
exbB-2 PSPTO0673 TonB system transport protein ExbBchromosome CDS728838 693 - 0.623377
exbB-3 PSPTO2482 TonB system transport protein ExbBchromosome CDS2742562 729 + 0.620027
exbD-1 PSPTO0068 TonB system transport protein ExbDchromosome CDS91114 426 - 0.596244
exbD-2 PSPTO0672 TonB system transport protein ExbDchromosome CDS728432 405 - 0.632099
exbD-3 PSPTO2483 TonB system transport protein ExbDchromosome CDS2743322 372 + 0.580645
ffh PSPTO1472 signal recognition particle protein Ffhchromosome CDS1617559 1377 + 0.603486
fimA PSPTO2230 type I pilus biogensis protein FimAchromosome CDS2458675 552 - 0.592391
fimD PSPTO2228 outer membrane usher protein fimDchromosome CDS2455258 2514 - 0.59825
flhA PSPTO1976 flagellar biosynthesis protein FlhAchromosome CDS2160485 2130 + 0.585916
flhB PSPTO1975 flagellar biosynthetic protein FlhBchromosome CDS2158962 1137 + 0.591029
fliE PSPTO1957 flagellar hook-basal body complex protein FliEchromosome CDS2144312 357 + 0.54902
fliF PSPTO1958 flagellar M-ring protein FliFchromosome CDS2144684 1785 + 0.602241
fliI PSPTO1961 flagellum-specific ATP synthase FliIchromosome CDS2148301 1359 + 0.640177
fliN PSPTO1970 flagellar motor switch protein FliNchromosome CDS2156222 459 + 0.605664
fliP PSPTO1972 flagellar biosynthetic protein FliPchromosome CDS2157121 753 + 0.569721
fliQ PSPTO1973 flagellar biosynthetic protein FliQchromosome CDS2157899 270 + 0.585185
fliR PSPTO1974 flagellar biosynthetic protein FliRchromosome CDS2158184 777 + 0.594595
fliS PSPTO1952 flagellar protein FliSchromosome CDS2138982 390 + 0.582051
ftsY PSPTO0427 signal recognition particle-docking protein FtsYchromosome CDS472419 1542 + 0.609598
gspD PSPTO3307 general secretion pathway protein Dchromosome CDS3740495 2292 - 0.608639
gspE PSPTO3317 general secretion pathway protein Echromosome CDS3748853 1758 - 0.624005
gspF PSPTO3316 general secretion pathway protein Fchromosome CDS3747654 1203 - 0.627598
gspG PSPTO3315 general secretion pathway protein Gchromosome CDS3747197 432 - 0.587963
gspH PSPTO3314 general secretion pathway protein Hchromosome CDS3746754 435 - 0.62069
hrcC PSPTO1389 outer-membrane type III secretion protein HrcCchromosome CDS1529049 1941 + 0.578568
hrcJ PSPTO1384 type III secretion protein HrcJchromosome CDS1526201 807 + 0.592317
hrcN PSPTO1400 type III secretion cytoplasmic ATPase HrcNchromosome CDS1537029 1350 - 0.653333
hrcQb PSPTO1396 type III secretion protein HrcQbchromosome CDS1534888 414 - 0.60628
hrcR PSPTO1395 type III secretion protein HrcRchromosome CDS1534238 603 - 0.580431
hrcS PSPTO1394 type III secretion protein HrcSchromosome CDS1533964 267 - 0.580524
hrcT PSPTO1393 type III secretion protein HrcTchromosome CDS1533169 795 - 0.608805
hrcU PSPTO1392 type III secretion protein HrcUchromosome CDS1532093 1080 - 0.571296
hrcV PSPTO1402 type III secretion protein HrcVchromosome CDS1539401 2088 - 0.597222
hrpW1 PSPTO1373 type III helper protein HrpW1chromosome CDS1509390 1275 - 0.579608
lepB PSPTO4219 signal peptidase Ichromosome CDS4751478 855 - 0.567251
lspA PSPTO0807 lipoprotein signal peptidasechromosome CDS873231 522 + 0.584291
nfrB PSPTO1194 bacteriophage N4 adsorption protein Bchromosome CDS1307737 2121 - 0.602546
papD PSPTO2229 chaperone protein PapDchromosome CDS2457811 756 - 0.582011
pilB PSPTO0926 type IV pilus biogenesis protein PilBchromosome CDS1005287 1695 - 0.543363
pilC PSPTO0925 type IV pilus biogenesis protein PilCchromosome CDS1004067 1218 - 0.478654
pilD PSPTO0924 type IV pilus prepilin peptidase PilDchromosome CDS1003193 873 - 0.592211
pilF PSPTO1432 type IV pilus biogenesis protein PilFchromosome CDS1569793 759 + 0.561265
pilM PSPTO5132 type IV pilus biogenesis protein PilMchromosome CDS5839427 1065 - 0.588732
pilN PSPTO5131 type IV pilus biogenesis protein PilNchromosome CDS5838801 627 - 0.596491
pilO PSPTO5130 type IV pilus biogenesis protein PilOchromosome CDS5838181 624 - 0.564103
pilP PSPTO5129 type IV pilus biogenesis protein PilPchromosome CDS5837657 528 - 0.600379
pilQ PSPTO5128 type IV pilus biogenesis protein PilQchromosome CDS5835504 2157 - 0.589708
pilZ PSPTO3825 type IV pilus biogenesis protein PilZchromosome CDS4333852 357 - 0.593838
secA PSPTO4400 preprotein translocase, SecA subunitchromosome CDS4964661 2742 - 0.579504
secB PSPTO5324 protein-export protein SecBchromosome CDS6052712 495 - 0.579798
secD PSPTO1415 protein-export membrane protein SecDchromosome CDS1554625 1869 + 0.59176
secE PSPTO0613 preprotein translocase, SecE subunitchromosome CDS674963 369 + 0.512195
secF PSPTO1416 protein-export membrane protein SecFchromosome CDS1556503 912 + 0.594298
secG PSPTO4493 preprotein translocase, SecG subunitchromosome CDS5061595 381 - 0.506562
secY PSPTO0646 preprotein translocase, SecY subunitchromosome CDS700726 1335 + 0.549813
sppA PSPTO3838 signal peptide peptidase SppA, 36K typechromosome CDS4343921 999 - 0.570571
tatA PSPTO5155 sec-independent protein translocase TatAchromosome CDS5864849 276 + 0.59058
tatB PSPTO5156 sec-independent protein translocase TatBchromosome CDS5865129 462 + 0.62987
tatC PSPTO5157 sec-independent protein translocase TatCchromosome CDS5865587 801 + 0.583021
tliF PSPTO3328 ABC transporter, permease proteinchromosome CDS3763908 1371 - 0.599562
tolB PSPTO3972 tolB proteinchromosome CDS4479461 1302 - 0.557604
tolQ-1 PSPTO3240 tolQ proteinchromosome CDS3660863 711 - 0.620253
tolQ-2 PSPTO3975 tolQ proteinchromosome CDS4482308 696 - 0.58046
tolR-1 PSPTO3239 tolR proteinchromosome CDS3660407 447 - 0.612975
tolR-2 PSPTO3974 tolR proteinchromosome CDS4481829 465 - 0.554839
yajC PSPTO1414 preprotein translocase, YajC subunitchromosome CDS1554227 336 + 0.556548