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2024-05-18 10:09:48

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 102

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Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PSHAa1310 putative signal peptidase I family proteinSubName: Full=Putative signal peptidase I family protein; EC=3.4.21.89; chromosome I CDS1365436 651 + 0.388633
NA PSHAa0925 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS953453 996 + 0.365462
NA PSHAa0577 putative metal ion efflux outer membrane factor protein familySubName: Full=Putative metal ion efflux outer membrane factor protein family; chromosome I CDS595995 1248 + 0.432692
NA PSHAa1171 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS1219291 3183 + 0.430726
NA PSHAa1375 putative preprotein translocase SecF, auxillary membrane component (General Secretory Pathway)RecName: Full=Protein-export membrane protein SecF; chromosome I CDS1439451 942 + 0.416136
NA PSHAb0523 putative TonB system-dependent transport proteinSubName: Full=Putative TonB system-dependent transport protein; chromosome II CDS589728 411 + 0.440389
NA PSHAa0930 putative Type IV pilus biogenesis proteinSubName: Full=Putative Type IV pilus biogenesis protein; chromosome I CDS959154 552 - 0.413043
NA PSHAa2574 conserved protein of unknown functionSubName: Full=Uncharacterized protein; chromosome I CDS2719843 1710 + 0.418713
NA PSHAa1568 putative enzymatic proteinSubName: Full=Putative enzymatic protein; chromosome I CDS1633543 2505 - 0.407984
NA PSHAb0140 putative lytic cell-wall binding lipoproteinSubName: Full=Putative lytic cell-wall binding lipoprotein; chromosome II CDS173453 1734 - 0.392157
NA PSHAb0475 conserved protein of unknown functionSubName: Full=Putative uncharacterized protein; chromosome II CDS537167 333 - 0.372372
NA PSHAa0927 conserved protein of unknown function ; putative pilin biogenesis proteinSubName: Full=Uncharacterized protein; chromosome I CDS954941 3171 + 0.398297
NA PSHAa2122 conserved protein of unknown function ; putative membrane proteinSubName: Full=Uncharacterized protein; chromosome I CDS2242980 2406 - 0.373234
NA PSHAa2698 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (pilus type IV) with frame shiftSubName: Full=Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshI (Pilus type IV) with frame shift; chromosome I CDS2855365 600 - 0.373333
NA PSHAa0558 putative outer membrane transport proteinSubName: Full=Putative outer membrane transport protein; chromosome I CDS575553 1419 + 0.411557
NA PSHAa0924 putative type IV pilus biogenesis protein; membrane proteinSubName: Full=Putative type IV pilus biogenesis protein membrane protein; chromosome I CDS952891 561 + 0.449198
NA PSHAb0521 putative Tol proteinSubName: Full=Putative Tol protein; chromosome II CDS587775 1368 + 0.421784
NA PSHAa2329 putative orphan protein ; putative signal peptideSubName: Full=Putative orphan protein putative signal peptide; chromosome I CDS2468748 2469 - 0.347104
NA PSHAb0522 putative TonB system-dependent transport proteinSubName: Full=Putative TonB system-dependent transport protein; chromosome II CDS589146 528 + 0.441288
NA PSHAb0070 putative biopolymer transport protein, MotA/TolQ/ExbB proton channel domainSubName: Full=Putative biopolymer transport protein, MotA/TolQ/ExbB proton channel domain; chromosome II CDS82437 552 + 0.382246
NA PSHAa0376 conserved protein of unknown function ; putative CpxP (P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated) domaiSubName: Full=Uncharacterized protein; chromosome I CDS392345 486 + 0.411523
NA PSHAa0303 putative outer membrane cation efflux proteinSubName: Full=Putative outer membrane cation efflux protein; chromosome I CDS313832 1326 + 0.427602
NA PSHAa2930 Sec-independent protein translocase protein TatBSubName: Full=Sec-independent protein translocase protein TatB; chromosome I CDS3102126 333 + 0.405405
NA PSHAa0240 putative general secretion pathway protein LRecName: Full=Type II secretion system protein L; Short=T2SS protein L; chromosome I CDS253820 1209 + 0.417701
NA PSHAb0325 putative outer membrane protein oprM precursor of a metabolite export systemSubName: Full=Putative outer membrane protein oprM of a metabolite export system; chromosome II CDS377978 1413 + 0.43666
NA PSHAa0241 putative general secretion pathway protein MRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; chromosome I CDS255025 474 + 0.386076
NA PSHAb0372 putative lipoprotein, possibly associated with the outermembraneSubName: Full=Putative lipoprotein, possibly associated with the outermembrane; chromosome II CDS435886 1413 + 0.424628
NA PSHAa0383 putative Pilus biogenesis protein tapA precursorSubName: Full=Putative Pilus biogenesis protein tapA; chromosome I CDS398670 396 - 0.338384
NA PSHAa0929 putative Type IV pilus biogenesis proteinSubName: Full=Putative Type IV pilus biogenesis protein; chromosome I CDS958542 537 - 0.363128
NA PSHAa2353 putative orphan proteinSubName: Full=Putative orphan protein; chromosome I CDS2495244 2874 + 0.31872
NA PSHAa2267 putative ATPase and membrane proteinSubName: Full=Putative ATPase and membrane protein; chromosome I CDS2410810 918 - 0.404139
NA PSHAa2124 putative orphan proteinSubName: Full=Putative orphan protein; chromosome I CDS2246116 699 - 0.34907
NA PSHAa2963 conserved protein of unknown function; putative TolB-type secreted proteinSubName: Full=Uncharacterized protein; chromosome I CDS3145536 2832 - 0.414195
ExbB2 PSHAa1189 TonB system transport protein ExbB2SubName: Full=TonB system transport protein ExbB2; chromosome I CDS1236894 525 + 0.426667
ExbD2 PSHAa1190 TonB system transport protein ExbD2SubName: Full=TonB system transport protein ExbD2; chromosome I CDS1237481 357 + 0.378151
ccmD PSHAa0825 heme exporter protein D (Cytochrome c-type biogenesis protein ccmD)SubName: Full=Heme exporter protein D (Cytochrome c-type biogenesis protein ccmD); chromosome I CDS855056 201 + 0.348259
clpP PSHAa2062 ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp) (Caseinolytic protease) (Protease Ti)(Heat shock protein F21.5)RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome I CDS2180836 618 - 0.399676
csgA PSHAb0197 putative secreted major subunit of curlin, may bind calciumSubName: Full=Putative secreted major subunit of curlin, may bind calcium; chromosome II CDS233628 1506 - 0.37583
exeD PSHAa0232 General secretion pathway protein DSubName: Full=General secretion pathway protein D; chromosome I CDS245801 2067 + 0.41074
exeE PSHAa0233 General secretion pathway protein E (Type II traffic warden ATPase)SubName: Full=General secretion pathway protein E (Type II traffic warden ATPase); chromosome I CDS247860 1566 + 0.430396
ffh PSHAa0942 4.5S-RNP protein, GTP-binding export factor, part of signal recognition particle with 4.5 RNARecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome I CDS972364 1380 + 0.426087
flgM PSHAa0764 putative negative regulator of flagellin synthesisSubName: Full=Putative negative regulator of flagellin synthesis; chromosome I CDS797324 321 - 0.404984
flgN PSHAa0763 putative flagellar biosynthesis chaperoneSubName: Full=Putative flagellar biosynthesis chaperone; chromosome I CDS796900 432 - 0.363426
flhA PSHAa0806 flagellar biosynthesis protein, putative export proteinSubName: Full=Flagellar biosynthesis protein, putative export protein; chromosome I CDS836489 2037 + 0.42808
flhB PSHAa0805 Flagellar biosynthetic protein flhB, putative part of export apparatus for flagellar proteinsSubName: Full=Flagellar biosynthetic protein flhB, putative part of export apparatus for flagellar proteins; chromosome I CDS835211 1131 + 0.409372
fliE PSHAa0791 flagellar biosynthesis; basal-body componentRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome I CDS823477 291 + 0.419244
fliF PSHAa0792 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome I CDS823788 1716 + 0.445804
fliH PSHAa0794 putative flagellar biosynthesis; export of flagellar proteinsSubName: Full=Putative flagellar biosynthesis export of flagellar proteins; chromosome I CDS826555 801 + 0.421973
fliI PSHAa0795 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; EC=3.6.3.14; chromosome I CDS827374 1335 + 0.474157
fliJ PSHAa0796 flagellar proteinSubName: Full=Flagellar protein; chromosome I CDS828771 387 + 0.387597
fliN PSHAa0800 flagellar biosynthesis; component of motor switch and energizingSubName: Full=Flagellar biosynthesis component of motor switch and energizing; chromosome I CDS832585 399 + 0.421053
fliP PSHAa0802 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome I CDS833368 741 + 0.415655
fliQ PSHAa0803 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome I CDS834150 270 + 0.392593
fliR PSHAa0804 flagellar biosynthetic proteinRecName: Full=Flagellar biosynthetic protein fliR; chromosome I CDS834506 696 + 0.428161
fliS PSHAa0786 putative flagellar biosynthesis proteinSubName: Full=Putative flagellar biosynthesis protein; chromosome I CDS817432 402 - 0.368159
ftsY PSHAa0354 Cell division transporter substrate-binding protein FtsYSubName: Full=Cell division transporter substrate-binding protein FtsY; chromosome I CDS367425 1956 + 0.448875
gspC PSHAa0231 putative general secretion pathway protein CSubName: Full=Putative general secretion pathway protein C; chromosome I CDS244836 942 + 0.404459
gspF PSHAa0234 putative general secretion pathway protein FSubName: Full=Putative general secretion pathway protein F; chromosome I CDS249428 1236 + 0.42233
gspG PSHAa0235 putative general secretion pathway protein G [Precursor]SubName: Full=Putative general secretion pathway protein G [Precursor]; chromosome I CDS250765 387 + 0.405685
gspH PSHAa0236 putative general secretion pathway protein H precursorSubName: Full=Putative general secretion pathway protein H; chromosome I CDS251201 585 + 0.408547
gspI PSHAa0237 putative general secretion pathway protein I [precursor]SubName: Full=Putative general secretion pathway protein I [precursor]; chromosome I CDS251785 378 + 0.407407
gspJ PSHAa0238 putative general secretion pathway protein J [Precursor]SubName: Full=Putative general secretion pathway protein J [Precursor]; chromosome I CDS252163 675 + 0.435556
gspK PSHAa0239 putative general secretion pathway proteinRecName: Full=Type II secretion system protein K; chromosome I CDS252837 987 + 0.424519
lepB PSHAa0731 signal peptidase I (SPase I) (Leader peptidase I)RecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome I CDS763572 936 + 0.384615
lspA PSHAa0919 lipoprotein signal peptidase (SPase II)(Prolipoprotein signal peptidase)RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome I CDS949102 501 + 0.377246
mshE PSHAa2692 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (pilus type IV)SubName: Full=Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshE (Pilus type IV); chromosome I CDS2848887 1728 - 0.427083
mshG PSHAa2691 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (pilus type IV)SubName: Full=Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshG (Pilus type IV); chromosome I CDS2847680 1221 - 0.384111
mshL PSHAa2695 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus type IV)SubName: Full=Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (Pilus type IV); chromosome I CDS2852745 1659 - 0.420133
mshM PSHAa2694 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshM (pilus type IV)SubName: Full=Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshM (Pilus type IV); chromosome I CDS2851840 903 - 0.417497
mshO PSHAa2686 putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshO (pilus type IV)SubName: Full=Putative Mannose-sensitive agglutinin (MSHA) biogenesis protein MshO (Pilus type IV); chromosome I CDS2844669 843 - 0.3879
pilB PSHAa0378 type IV pilus biogenesis protein PilBSubName: Full=Type IV pilus biogenesis protein PilB; chromosome I CDS393375 1674 - 0.4092
pilC PSHAa0381 type IV pilus biogenesis protein PilCSubName: Full=Type IV pilus biogenesis protein PilC; chromosome I CDS396727 1227 - 0.427873
pilD PSHAa0380 Type 4 prepilin-like proteins leader peptide processing enzymeRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome I CDS395803 876 - 0.416667
pilE PSHAa0928 putative fimbrial protein precursorSubName: Full=Putative fimbrial protein; chromosome I CDS958131 411 + 0.389294
pilM PSHAa2720 putative Type IV pilus biogenesis protein PilMSubName: Full=Putative Type IV pilus biogenesis protein PilM; chromosome I CDS2882730 1080 - 0.409259
pilN PSHAa2719 putative Type IV pilus biogenesis protein PilNSubName: Full=Putative Type IV pilus biogenesis protein PilN; chromosome I CDS2882170 573 - 0.359511
pilO PSHAa2718 putative Type IV pilus biogenesis protein PilOSubName: Full=Putative Type IV pilus biogenesis protein PilO; chromosome I CDS2881578 603 - 0.363184
pilP PSHAa2717 putative Type IV pilus biogenesis protein PilPSubName: Full=Putative Type IV pilus biogenesis protein PilP; chromosome I CDS2881042 537 - 0.378026
pilQ PSHAa2716 putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)SubName: Full=Putative type IV pilus biogenesis protein PilQ (Cytoplasmic ATPase); chromosome I CDS2878965 2091 - 0.393592
pilT PSHAa2603 twitching motility protein PilT (type IV pili)SubName: Full=Twitching motility protein PilT (Type IV pili); chromosome I CDS2748148 963 - 0.420561
pilU PSHAa2602 twitching motility protein PilU (type IV pili)SubName: Full=Twitching motility protein PilU (Type IV pili); chromosome I CDS2747002 1137 - 0.423043
pilZ PSHAa1801 type 4 fimbrial biogenesis protein PILZSubName: Full=Type 4 fimbrial biogenesis protein PILZ; chromosome I CDS1891761 327 - 0.40367
ppdD PSHAa0384 putative prepilin peptidase dependent protein DSubName: Full=Putative prepilin peptidase dependent protein D; chromosome I CDS399118 432 - 0.416667
secA PSHAa2743 preprotein translocase, ATPase secretion component (General Secretory Pathway)RecName: Full=Protein translocase subunit SecA; chromosome I CDS2912355 2709 + 0.418974
secB PSHAa0369 molecular chaperone in protein export, enhances activity of SecA (General Secretory Pathway)RecName: Full=Protein-export protein SecB; chromosome I CDS385351 489 + 0.411043
secD PSHAa1374 preprotein translocase subunit SecDRecName: Full=Protein translocase subunit SecD; chromosome I CDS1437620 1839 + 0.424687
secD PSHAa0321 preprotein translocase, auxillary membrane component (General Secretory Pathway)RecName: Full=Protein translocase subunit SecD; chromosome I CDS336231 1860 + 0.436559
secE PSHAa0216 preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway)RecName: Full=Protein translocase subunit SecE; chromosome I CDS224525 378 + 0.428571
secF PSHAa0322 preprotein translocase, auxillary membrane component (General Secretory Pathway)RecName: Full=Protein-export membrane protein SecF; chromosome I CDS338100 948 + 0.397679
secG PSHAa0874 protein-export membrane protein secG(General Secretory Pathway)SubName: Full=Protein-export membrane protein secG(General Secretory Pathway); chromosome I CDS900841 354 + 0.38983
secY PSHAa2810 preprotein translocase, membrane component, transport across inner membrane (General Secretory Pathway)RecName: Full=Protein translocase subunit SecY; chromosome I CDS2988051 1329 - 0.439428
smf PSHAa0025 conserved protein of unknown function ; Smf proteinSubName: Full=Uncharacterized protein; chromosome I CDS28157 1089 + 0.43067
sohB PSHAa1345 protease (may metabolize cleaved signal peptides)SubName: Full=Protease (May metabolize cleaved signal peptides); EC=3.4.21.-; chromosome I CDS1393901 1020 + 0.358824
sppA PSHAa1409 protease IV, a signal peptide peptidaseRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome I CDS1478457 1866 - 0.405681
tatA PSHAa2929 twin-arginine translocase subunit, sec-independent protein exportRecName: Full=Sec-independent protein translocase protein TatA; chromosome I CDS3101872 249 + 0.345382
tatC PSHAa2931 twin-arginine translocase subunit, sec-independent protein exportRecName: Full=Sec-independent protein translocase protein TatC; chromosome I CDS3102507 741 + 0.390013
tolB PSHAa1871 required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNARecName: Full=Protein TolB; Flags: Precursor; chromosome I CDS1973010 1359 - 0.408389
tolC PSHAa2592 Outer membrane protein tolC precursorSubName: Full=Outer membrane protein tolC; chromosome I CDS2736584 1356 + 0.412979
tolQ PSHAa1874 inner membrane protein required for outer membrane integrity, uptake of group A colicins and phage DNASubName: Full=Inner membrane protein required for outer membrane integrity, uptake of group A colicins and phage DNA; chromosome I CDS1975706 615 - 0.393496
tolR PSHAa1873 tol protein, role in outer membrane integrity, uptake of group A colicins (TonB-independent), and phage DNASubName: Full=Tol protein, role in outer membrane integrity, uptake of group A colicins (TonB-independent), and phage DNA; chromosome I CDS1975288 387 - 0.408269
yajC PSHAa0320 putative preprotein translocase IISP family, membrane subunitSubName: Full=Putative preprotein translocase IISP family, membrane subunit; chromosome I CDS335876 336 + 0.389881
yidC PSHAa3022 preprotein translocase ; inner membrane protein (IMP) integration factor; binds TM regions of nascent IMPs; required for Sec-independent IMP integratiRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome I CDS3211975 1635 - 0.385933