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2024-05-07 01:46:32

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Rhizobium etli CFN 42, CFN 42

Number of genes found: 57

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Rhizobium etli CFN 42, CFN 42
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RHE_CH02927 probable Clp protease proteinchromosome CDS3058900 2085 - 0.606715
NA RHE_CH01356 hypothetical conserved proteinchromosome CDS1417944 1950 + 0.587179
NA RHE_CH00199 hypothetical conserved proteinchromosome CDS212804 582 - 0.608247
NA RHE_CH00210 probable pilus assembly proteinchromosome CDS223059 987 + 0.632219
NA RHE_CH00200 hypothetical conserved proteinchromosome CDS213385 636 - 0.592767
NA RHE_PF00424 hypothetical conserved proteinp42f CDS478270 474 + 0.559072
NA RHE_CH02109 probable multiple antibiotic resistance transporter proteinchromosome CDS2209461 648 - 0.662037
NA RHE_CH00209 probable pilus assembly proteinchromosome CDS222036 1008 + 0.590278
NA RHE_CH02370 putative periplasmic component of the Tol biopolymer transport systemchromosome CDS2477192 828 - 0.612319
NA RHE_PF00425 hypothetical conserved proteinp42f CDS478745 585 + 0.589744
NA RHE_CH03558 hypothetical conserved proteinchromosome CDS3748217 456 + 0.640351
NA RHE_CH00437 putative inner membrane transmembrane proteinchromosome CDS449672 1794 - 0.608696
NA RHE_CH01892 putative RTX toxin hemolysin-type calcium-binding proteinchromosome CDS1972383 2103 - 0.611507
NA RHE_CH01639 probable DNA processing chain A proteinchromosome CDS1726075 1143 - 0.685039
NA RHE_CH01975 probable transport secretion system IV, VirD4 proteinchromosome CDS2058897 1560 - 0.627564
NA RHE_CH00201 hypothetical conserved proteinchromosome CDS214409 309 - 0.63754
NA RHE_CH02518 hypothetical conserved membrane proteinchromosome CDS2629053 1467 + 0.629857
atvA RHE_CH03485 acid tolerance and virulence proteinchromosome CDS3669164 1383 - 0.614606
clpP1 RHE_CH01414 endopeptidase Clp, subunit 1 proteinchromosome CDS1483984 609 + 0.579639
clpP2 RHE_CH01587 endopeptidase Clp, subunit 2 proteinchromosome CDS1669050 630 + 0.606349
clpP3 RHE_CH03069 endopeptidase Clp, subunit 3 proteinchromosome CDS3210802 585 - 0.593162
cpaA RHE_CH00203 prepilin peptidase proteinchromosome CDS215529 513 + 0.575049
cpaB RHE_CH00204 pilus assembly proteinchromosome CDS216152 816 + 0.626225
cpaC RHE_CH00205 pilus assembly secretion proteinchromosome CDS216980 1497 + 0.61857
cpaF RHE_CH00208 pilus assembly secretion ATP-binding proteinchromosome CDS220556 1476 + 0.626016
ffh RHE_CH03957 signal recognition particle GTP-binding proteinchromosome CDS4184268 1578 + 0.650824
flhA RHE_CH00686 flagellar biosynthesis transmembrane proteinchromosome CDS704174 2088 + 0.6159
flhB RHE_CH00650 flagellar biosynthesis transmembrane proteinchromosome CDS671097 1122 - 0.602496
fliE RHE_CH00660 flagellar hook-basal body proteinchromosome CDS679850 342 + 0.625731
fliF RHE_CH00646 flagellar M-ring proteinchromosome CDS666964 1692 + 0.624114
fliI RHE_CH00656 H(+)-transporting ATP synthase, flagellum-specific proteinchromosome CDS676928 1398 + 0.658083
fliN RHE_CH00652 flagellar motor switch proteinchromosome CDS673472 645 - 0.568992
fliP RHE_CH00667 flagellar biosynthesis transmembrane proteinchromosome CDS684381 738 + 0.593496
fliQ RHE_CH00685 flagellar biosynthesis transmembrane proteinchromosome CDS703773 267 + 0.588015
fliR RHE_CH00687 flagellar byosinthesis transmembrane proteinchromosome CDS706258 753 + 0.576361
ftsY RHE_CH03953 cell division proteinchromosome CDS4179771 1569 - 0.623327
lepB RHE_CH01389 signal peptidase I proteinchromosome CDS1463267 744 + 0.56586
lpsA RHE_CH00392 lipoprotein signal peptidase proteinchromosome CDS409010 504 - 0.603175
nodTch RHE_CH03413 nodulation protein (outer membrane efflux protein)chromosome CDS3589184 1437 + 0.633264
pilA RHE_CH00202 component of type IV pilus, pilin subunit proteinchromosome CDS215130 276 + 0.568841
plyA1 RHE_CH02605 polysaccharidase proteinchromosome CDS2716921 1488 - 0.575269
plyA3 RHE_CH03230 polysaccharidase proteinchromosome CDS3393139 1620 - 0.564198
secA RHE_CH03770 protein-export translocase proteinchromosome CDS3995954 2715 + 0.607367
secB RHE_CH00006 protein-export translocase chaperone proteinchromosome CDS4154 483 - 0.594203
secD1 RHE_CH00631 protein-export translocase proteinchromosome CDS651050 2550 - 0.633725
secD2 RHE_CH01832 protein-export translocase proteinchromosome CDS1919326 2541 + 0.619835
secE RHE_CH01661 protein-export translocase proteinchromosome CDS1750576 201 + 0.567164
secY RHE_CH01695 protein-export translocase proteinchromosome CDS1778162 1341 + 0.598807
sohB RHE_CH00879 protease proteinchromosome CDS919771 861 + 0.629501
sppA RHE_CH00400 proteinase IV proteinchromosome CDS414054 951 - 0.607781
tatA RHE_CH01823 SEC-independent protein translocase proteinchromosome CDS1911548 192 + 0.53125
tatB RHE_CH01824 SEC-independent protein translocase proteinchromosome CDS1911790 621 + 0.653784
tatC RHE_CH01825 SEC-independent protein translocase proteinchromosome CDS1912455 780 + 0.596154
tolB RHE_CH03462 protein transporter proteinchromosome CDS3648205 1311 - 0.6209
tolQ RHE_CH03466 protein transporter proteinchromosome CDS3651601 720 - 0.629167
tolR RHE_CH03465 protein transporter proteinchromosome CDS3651127 456 - 0.629386
yajC RHE_CH01831 preprotein tranlocase proteinchromosome CDS1918934 348 + 0.609195