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2024-05-17 09:28:15

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 103

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Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SSO_4012 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4239740 438 + 0.559361
NA SSO_2676 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2835968 1272 - 0.546384
NA SSO_0877 putative protease/scaffold proteinRecName: Full=ATP-dependent Clp protease proteolytic subunit; chromosome CDS931489 1146 + 0.5
NA SSO_3803 putative adhesinSubName: Full=Putative adhesin; chromosome CDS3988430 4851 - 0.505875
NA SSO_2427 putative minor capsid protein precursorSubName: Full=Putative minor capsid protein; chromosome CDS2562275 1281 - 0.605777
NA SSO_3900 putative fimbrial chaperoneSubName: Full=Putative fimbrial chaperone; chromosome CDS4116983 303 + 0.376238
NA SSO_1492 possible enzymeSubName: Full=Possible enzyme; chromosome CDS1565850 1257 + 0.5179
NA SSO_2391 putative minor fimbrial subunitSubName: Full=Putative minor fimbrial subunit; chromosome CDS2521916 525 - 0.457143
NA SSO_P144 adhesion protein, fragmentSubName: Full=Adhesion protein; pSS_046 CDS129560 258 + 0.391473
NA SSO_3675 putative DNA processing proteinSubName: Full=Putative DNA processing protein; chromosome CDS3852249 1296 - 0.50463
NA SSO_1019 putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS1094701 2181 - 0.417698
NA SSO_4011 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS4239347 312 + 0.451923
NA SSO_0024 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS23714 804 - 0.402985
NA SSO_0026 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS25267 369 - 0.384824
NA SSO_0947 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS1021484 564 + 0.47695
ccmD SSO_2256 heme exporter protein CSubName: Full=Heme exporter protein C; chromosome CDS2369977 210 - 0.566667
clpP SSO_0420 ATP-dependent proteolytic subunit of clpA-clpP serine proteaseRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS445474 624 + 0.511218
ecpD SSO_0152 probable pilin chaperone similar to PapDSubName: Full=Probable pilin chaperone similar to PapD; chromosome CDS169651 741 - 0.442645
exbB SSO_3149 uptake of enterochelin; tonB-dependent uptake of B colicinsSubName: Full=Uptake of enterochelin tonB-dependent uptake of B colicins; chromosome CDS3307576 735 - 0.530612
exbD SSO_3148 uptake of enterochelin; tonB-dependent uptake of B colicinsSubName: Full=Uptake of enterochelin tonB-dependent uptake of B colicins; chromosome CDS3307144 426 - 0.502347
ffh SSO_2767 GTP-binding export factor binds to signal sequence, GTP and RNARecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2918772 1362 - 0.544787
fhiA SSO_0273 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS299468 1740 - 0.574713
flgM SSO_1091 flagellar proteinSubName: Full=Flagellar protein; chromosome CDS1171140 294 - 0.520408
flgN SSO_1090 protein of flagellar biosynthesisSubName: Full=Protein of flagellar biosynthesis; chromosome CDS1170719 417 - 0.479616
flhB SSO_1240 putative part of export apparatus for flagellar proteinsSubName: Full=Putative part of export apparatus for flagellar proteins; chromosome CDS1314044 972 + 0.544239
fliE SSO_1995 flagellar basal-body componentRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2093645 315 - 0.539683
fliF SSO_1996 flagellar basal-body MS(membrane and supramembrane)-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2094175 1659 + 0.546715
fliH SSO_1998 flagellar biosynthesis proteinSubName: Full=Flagellar biosynthesis protein; chromosome CDS2096793 708 + 0.573446
fliI SSO_1999 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; chromosome CDS2097500 1374 + 0.580058
fliJ SSO_2000 flagellar fliJ proteinSubName: Full=Flagellar fliJ protein; chromosome CDS2098892 444 + 0.527027
fliN SSO_2004 FliNSubName: Full=FliN; chromosome CDS2102034 414 + 0.548309
fliP SSO_2006 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2102815 738 + 0.531165
fliQ SSO_2007 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS2103562 270 + 0.514815
fliR SSO_2008 flagellar biosynthesisRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS2103840 786 + 0.477099
fliS SSO_1981 flagellar repressor of class 3a and 3b operonsSubName: Full=Flagellar repressor of class 3a and 3b operons; chromosome CDS2081511 411 + 0.493917
ftsY SSO_3702 cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS3880016 1497 - 0.532398
hofC SSO_0114 putative integral membrane proteinSubName: Full=Putative integral membrane protein; chromosome CDS123749 1203 - 0.526185
hofQ SSO_3522 putative transport porteinSubName: Full=Putative transport portein; chromosome CDS3682112 1239 - 0.542373
icsA/virG SSO_P143 IcsA/VirGSubName: Full=IcsA/VirG; pSS_046 CDS126066 3309 + 0.40828
lepB SSO_2692 leader peptidaseRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS2849401 975 - 0.516923
lpfA SSO_3899 putative major fimbrial subunitSubName: Full=Putative major fimbrial subunit; chromosome CDS4116363 573 + 0.47644
lspA SSO_0032 prolipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS32373 495 + 0.535354
mxiA SSO_P109 MxiASubName: Full=MxiA; pSS_046 CDS99964 2067 + 0.341074
mxiD SSO_P107 MxiDSubName: Full=MxiD; pSS_046 CDS97171 1701 + 0.33157
mxiJ SSO_P101 MxiJSubName: Full=MxiJ; pSS_046 CDS93724 726 + 0.341598
ppdA SSO_2983 prepilin peptidase dependent protein ASubName: Full=Prepilin peptidase dependent protein A; chromosome CDS3133322 471 - 0.541401
ppdB SSO_2982 prepilin peptidase dependent protein BSubName: Full=Prepilin peptidase dependent protein B; chromosome CDS3132768 564 - 0.521277
ppdD SSO_0116 prelipin peptidase dependent proteinSubName: Full=Prelipin peptidase dependent protein; chromosome CDS126337 441 - 0.52381
prlA SSO_3441 putative ATPase subunit of translocaseRecName: Full=Protein translocase subunit SecY; chromosome CDS3615566 1332 - 0.493243
secA SSO_0106 preprotein translocase; secretion proteinRecName: Full=Protein translocase subunit SecA; chromosome CDS117622 2706 + 0.523651
secB SSO_3796 SecBRecName: Full=Protein-export protein SecB; chromosome CDS3981335 468 + 0.512821
secD SSO_0385 SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS412741 1848 + 0.531926
secE SSO_4154 preprotein translocaseRecName: Full=Protein translocase subunit SecE; chromosome CDS4396489 384 + 0.552083
secF SSO_0386 SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS414599 972 + 0.518519
secG SSO_3323 SecGSubName: Full=SecG; chromosome CDS3501246 333 - 0.498498
sfmF SSO_0507 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS536175 516 + 0.498062
sigA SSO_3223 serine proteaseSubName: Full=Serine protease; chromosome CDS3389961 3858 - 0.417574
smf SSO_3426 Predicted Rossmann-fold nucleotide-binding proteinSubName: Full=Predicted Rossmann-fold nucleotide-binding protein; chromosome CDS3605236 1125 - 0.511111
sohB SSO_1871 putative proteaseSubName: Full=Putative protease; chromosome CDS1969931 1050 - 0.506667
spa24 SSO_P115 Spa24SubName: Full=Spa24; pSS_046 CDS105916 651 + 0.347158
spa29 SSO_P116 Spa29SubName: Full=Spa29; pSS_046 CDS106841 771 + 0.326848
spa33 SSO_P114 Spa33SubName: Full=Spa33; pSS_046 CDS105030 882 + 0.316327
spa40 SSO_P117 Spa40SubName: Full=Spa40; pSS_046 CDS107618 1029 + 0.316812
spa47 SSO_P111 Spa47SubName: Full=Spa47; pSS_046 CDS102448 1293 + 0.392111
sppA SSO_1389 protease IV, a signal peptide peptidaseRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1462846 1857 - 0.521271
spy SSO_1414 periplasmic protein related to spheroblast formationSubName: Full=Periplasmic protein related to spheroblast formation; chromosome CDS1489467 462 + 0.519481
tolB SSO_0692 periplasmic proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS738139 1293 + 0.535963
tolC SSO_3173 TolCSubName: Full=TolC; chromosome CDS3331618 1488 + 0.514113
tolQ SSO_0689 membrane-spanning inner membrane proteinSubName: Full=Membrane-spanning inner membrane protein; chromosome CDS735585 693 + 0.502164
tolR SSO_0690 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS736281 429 + 0.517483
traD SSO_P190 TraD proteinSubName: Full=TraD protein; pSS_046 CDS166425 2202 + 0.528156
yadK SSO_0145 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS162339 597 - 0.420436
yadN SSO_0153 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS170496 585 - 0.441026
yaiU SSO_0349 flagellar proteinSubName: Full=Flagellar protein; chromosome CDS374335 2889 + 0.473866
yajC SSO_0384 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS412381 333 + 0.495495
ybbJ SSO_0477 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS507651 456 - 0.574561
ybeC SSO_0580 conserved hypothetical proteinRecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS618792 204 + 0.504902
ybgD SSO_0670 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS712918 567 - 0.477954
ybgP SSO_0668 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS709663 732 - 0.495902
ycbF SSO_0948 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS1022013 738 + 0.51897
ycbQ SSO_0942 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS1015950 552 + 0.434783
ycbR SSO_0943 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS1016584 702 + 0.451567
ychE SSO_1938 putative channel proteinSubName: Full=Putative channel protein; chromosome CDS2035845 648 - 0.481481
ydeB SSO_1599 conserved hypothetical proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1679118 666 + 0.510511
ydeK SSO_1611 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1692654 2214 + 0.49187
yehC SSO_2159 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS2263400 720 - 0.391667
yehD SSO_2160 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS2264154 543 - 0.405157
yfcS SSO_2393 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS2523427 645 - 0.486822
yfcU SSO_2394 PapC-like porin proteinSubName: Full=PapC-like porin protein; chromosome CDS2524198 2643 - 0.510027
yggR SSO_3105 putative protein transportSubName: Full=Uncharacterized protein; chromosome CDS3265817 1026 - 0.54386
ygiL SSO_3180 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS3338921 552 + 0.443841
yhgN SSO_3674 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3851610 594 + 0.50505
yidC SSO_3656 60 kDa inner-membrane proteinRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS3825987 1647 + 0.538555
yigU SSO_4013 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS4240180 777 + 0.5148
yiiO SSO_4083 Uncharacterized periplasmic proteinSubName: Full=Uncharacterized periplasmic protein; chromosome CDS4319859 504 + 0.5
yjaI SSO_4175 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4419475 567 - 0.516755
yjcP SSO_4261 putative enzymeSubName: Full=Putative enzyme; chromosome CDS4524996 1467 - 0.561691
ylcB SSO_0523 putative resistance proteinSubName: Full=Putative resistance protein; chromosome CDS556042 1383 + 0.513377
yohG SSO_2195 putative channel/filament proteinsSubName: Full=Putative channel/filament proteins; chromosome CDS2300256 1197 - 0.553049
yqiH SSO_3183 putative membrane proteinSubName: Full=Putative membrane protein; chromosome CDS3342966 759 + 0.389987
yraJ SSO_3289 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS3464292 2517 + 0.473977
yraK SSO_3291 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS3468293 954 + 0.474843
ytfI SSO_4400 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4664714 912 + 0.358553