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2024-05-02 19:20:53

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella sonnei Ss046, Ss046

Number of genes found: 103

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella sonnei Ss046, Ss046
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SSO_3900 putative fimbrial chaperonechromosome CDS4116983 303 + 0.376238
NA SSO_2391 putative minor fimbrial subunitchromosome CDS2521916 525 - 0.457143
NA SSO_4012 conserved hypothetical proteinchromosome CDS4239740 438 + 0.559361
NA SSO_3803 putative adhesinchromosome CDS3988430 4851 - 0.505875
NA SSO_3675 putative DNA processing proteinchromosome CDS3852249 1296 - 0.50463
NA SSO_2427 putative minor capsid protein precursorchromosome CDS2562275 1281 - 0.605777
NA SSO_0877 putative protease/scaffold proteinchromosome CDS931489 1146 + 0.5
NA SSO_1019 putative membrane proteinchromosome CDS1094701 2181 - 0.417698
NA SSO_P144 adhesion protein, fragmentpSS_046 CDS129560 258 + 0.391473
NA SSO_4011 conserved hypothetical proteinchromosome CDS4239347 312 + 0.451923
NA SSO_0947 putative fimbrial-like proteinchromosome CDS1021484 564 + 0.47695
NA SSO_1492 possible enzymechromosome CDS1565850 1257 + 0.5179
NA SSO_0024 hypothetical proteinchromosome CDS23714 804 - 0.402985
NA SSO_2676 hypothetical proteinchromosome CDS2835968 1272 - 0.546384
NA SSO_0026 hypothetical proteinchromosome CDS25267 369 - 0.384824
ccmD SSO_2256 heme exporter protein Cchromosome CDS2369977 210 - 0.566667
clpP SSO_0420 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS445474 624 + 0.511218
ecpD SSO_0152 probable pilin chaperone similar to PapDchromosome CDS169651 741 - 0.442645
exbB SSO_3149 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3307576 735 - 0.530612
exbD SSO_3148 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3307144 426 - 0.502347
ffh SSO_2767 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2918772 1362 - 0.544787
fhiA SSO_0273 flagellar biosynthesischromosome CDS299468 1740 - 0.574713
flgM SSO_1091 flagellar proteinchromosome CDS1171140 294 - 0.520408
flgN SSO_1090 protein of flagellar biosynthesischromosome CDS1170719 417 - 0.479616
flhB SSO_1240 putative part of export apparatus for flagellar proteinschromosome CDS1314044 972 + 0.544239
fliE SSO_1995 flagellar basal-body componentchromosome CDS2093645 315 - 0.539683
fliF SSO_1996 flagellar basal-body MS(membrane and supramembrane)-ring and collar proteinchromosome CDS2094175 1659 + 0.546715
fliH SSO_1998 flagellar biosynthesis proteinchromosome CDS2096793 708 + 0.573446
fliI SSO_1999 flagellum-specific ATP synthasechromosome CDS2097500 1374 + 0.580058
fliJ SSO_2000 flagellar fliJ proteinchromosome CDS2098892 444 + 0.527027
fliN SSO_2004 FliNchromosome CDS2102034 414 + 0.548309
fliP SSO_2006 flagellar biosynthesischromosome CDS2102815 738 + 0.531165
fliQ SSO_2007 flagellar biosynthesischromosome CDS2103562 270 + 0.514815
fliR SSO_2008 flagellar biosynthesischromosome CDS2103840 786 + 0.477099
fliS SSO_1981 flagellar repressor of class 3a and 3b operonschromosome CDS2081511 411 + 0.493917
ftsY SSO_3702 cell division membrane proteinchromosome CDS3880016 1497 - 0.532398
hofC SSO_0114 putative integral membrane proteinchromosome CDS123749 1203 - 0.526185
hofQ SSO_3522 putative transport porteinchromosome CDS3682112 1239 - 0.542373
icsA/virG SSO_P143 IcsA/VirGpSS_046 CDS126066 3309 + 0.40828
lepB SSO_2692 leader peptidasechromosome CDS2849401 975 - 0.516923
lpfA SSO_3899 putative major fimbrial subunitchromosome CDS4116363 573 + 0.47644
lspA SSO_0032 prolipoprotein signal peptidasechromosome CDS32373 495 + 0.535354
mxiA SSO_P109 MxiApSS_046 CDS99964 2067 + 0.341074
mxiD SSO_P107 MxiDpSS_046 CDS97171 1701 + 0.33157
mxiJ SSO_P101 MxiJpSS_046 CDS93724 726 + 0.341598
ppdA SSO_2983 prepilin peptidase dependent protein Achromosome CDS3133322 471 - 0.541401
ppdB SSO_2982 prepilin peptidase dependent protein Bchromosome CDS3132768 564 - 0.521277
ppdD SSO_0116 prelipin peptidase dependent proteinchromosome CDS126337 441 - 0.52381
prlA SSO_3441 putative ATPase subunit of translocasechromosome CDS3615566 1332 - 0.493243
secA SSO_0106 preprotein translocase; secretion proteinchromosome CDS117622 2706 + 0.523651
secB SSO_3796 SecBchromosome CDS3981335 468 + 0.512821
secD SSO_0385 SecDchromosome CDS412741 1848 + 0.531926
secE SSO_4154 preprotein translocasechromosome CDS4396489 384 + 0.552083
secF SSO_0386 SecFchromosome CDS414599 972 + 0.518519
secG SSO_3323 SecGchromosome CDS3501246 333 - 0.498498
sfmF SSO_0507 putative fimbrial-like proteinchromosome CDS536175 516 + 0.498062
sigA SSO_3223 serine proteasechromosome CDS3389961 3858 - 0.417574
smf SSO_3426 Predicted Rossmann-fold nucleotide-binding proteinchromosome CDS3605236 1125 - 0.511111
sohB SSO_1871 putative proteasechromosome CDS1969931 1050 - 0.506667
spa24 SSO_P115 Spa24pSS_046 CDS105916 651 + 0.347158
spa29 SSO_P116 Spa29pSS_046 CDS106841 771 + 0.326848
spa33 SSO_P114 Spa33pSS_046 CDS105030 882 + 0.316327
spa40 SSO_P117 Spa40pSS_046 CDS107618 1029 + 0.316812
spa47 SSO_P111 Spa47pSS_046 CDS102448 1293 + 0.392111
sppA SSO_1389 protease IV, a signal peptide peptidasechromosome CDS1462846 1857 - 0.521271
spy SSO_1414 periplasmic protein related to spheroblast formationchromosome CDS1489467 462 + 0.519481
tolB SSO_0692 periplasmic proteinchromosome CDS738139 1293 + 0.535963
tolC SSO_3173 TolCchromosome CDS3331618 1488 + 0.514113
tolQ SSO_0689 membrane-spanning inner membrane proteinchromosome CDS735585 693 + 0.502164
tolR SSO_0690 putative inner membrane proteinchromosome CDS736281 429 + 0.517483
traD SSO_P190 TraD proteinpSS_046 CDS166425 2202 + 0.528156
yadK SSO_0145 putative fimbrial proteinchromosome CDS162339 597 - 0.420436
yadN SSO_0153 putative fimbrial-like proteinchromosome CDS170496 585 - 0.441026
yaiU SSO_0349 flagellar proteinchromosome CDS374335 2889 + 0.473866
yajC SSO_0384 conserved hypothetical proteinchromosome CDS412381 333 + 0.495495
ybbJ SSO_0477 conserved hypothetical proteinchromosome CDS507651 456 - 0.574561
ybeC SSO_0580 conserved hypothetical proteinchromosome CDS618792 204 + 0.504902
ybgD SSO_0670 putative fimbrial-like proteinchromosome CDS712918 567 - 0.477954
ybgP SSO_0668 putative chaperonechromosome CDS709663 732 - 0.495902
ycbF SSO_0948 putative chaperonechromosome CDS1022013 738 + 0.51897
ycbQ SSO_0942 putative fimbrial-like proteinchromosome CDS1015950 552 + 0.434783
ycbR SSO_0943 putative chaperonechromosome CDS1016584 702 + 0.451567
ychE SSO_1938 putative channel proteinchromosome CDS2035845 648 - 0.481481
ydeB SSO_1599 conserved hypothetical proteinchromosome CDS1679118 666 + 0.510511
ydeK SSO_1611 conserved hypothetical proteinchromosome CDS1692654 2214 + 0.49187
yehC SSO_2159 putative chaperonechromosome CDS2263400 720 - 0.391667
yehD SSO_2160 putative fimbrial-like proteinchromosome CDS2264154 543 - 0.405157
yfcS SSO_2393 putative chaperonechromosome CDS2523427 645 - 0.486822
yfcU SSO_2394 PapC-like porin proteinchromosome CDS2524198 2643 - 0.510027
yggR SSO_3105 putative protein transportchromosome CDS3265817 1026 - 0.54386
ygiL SSO_3180 putative fimbrial-like proteinchromosome CDS3338921 552 + 0.443841
yhgN SSO_3674 conserved hypothetical proteinchromosome CDS3851610 594 + 0.50505
yidC SSO_3656 60 kDa inner-membrane proteinchromosome CDS3825987 1647 + 0.538555
yigU SSO_4013 conserved hypothetical proteinchromosome CDS4240180 777 + 0.5148
yiiO SSO_4083 Uncharacterized periplasmic proteinchromosome CDS4319859 504 + 0.5
yjaI SSO_4175 conserved hypothetical proteinchromosome CDS4419475 567 - 0.516755
yjcP SSO_4261 putative enzymechromosome CDS4524996 1467 - 0.561691
ylcB SSO_0523 putative resistance proteinchromosome CDS556042 1383 + 0.513377
yohG SSO_2195 putative channel/filament proteinschromosome CDS2300256 1197 - 0.553049
yqiH SSO_3183 putative membrane proteinchromosome CDS3342966 759 + 0.389987
yraJ SSO_3289 putative outer membrane proteinchromosome CDS3464292 2517 + 0.473977
yraK SSO_3291 putative fimbrial proteinchromosome CDS3468293 954 + 0.474843
ytfI SSO_4400 conserved hypothetical proteinchromosome CDS4664714 912 + 0.358553