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2024-05-18 22:40:47

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 115

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0004 inner membrane protein, 60 kDaRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS4058 1626 - 0.45572
SO0017 conserved hypothetical protein chromosome CDS18941 3150 - 0.465397
SO0034 DNA processing protein DprA, putative chromosome CDS39244 1017 + 0.481809
SO0129 conserved hypothetical protein TIGR00427SubName: Full=6TMS neutral amino acid transporter (NAAT) family protein YhgN; chromosome CDS136310 594 + 0.456229
SO0281 type IV pilus biogenesis protein PilMSubName: Full=Type IV pilus biogenesis protein PilM; chromosome CDS288762 1080 + 0.448148
SO0282 type IV pilus biogenesis protein PilNSubName: Full=Type IV pilus biogenesis protein PilN; chromosome CDS289829 585 + 0.42906
SO0283 type IV pilus biogenesis protein PilOSubName: Full=Type IV pilus biogenesis protein PilO; chromosome CDS290410 621 + 0.399356
SO0284 type IV pilus biogenesis protein PilPSubName: Full=PilQ chaperone PilP; chromosome CDS291030 516 + 0.422481
SO0285 type IV pilus biogenesis protein PilQSubName: Full=Type IV pilus secretin PilQ; chromosome CDS291567 2055 + 0.424331
SO0288 damX domain proteinSubName: Full=Cell division protein DamX; chromosome CDS295460 1413 + 0.47063
SO0415 type IV pilus biogenesis protein PilCSubName: Full=Type IV pilus inner membrane protein PilC; chromosome CDS430085 1272 - 0.477201
SO0416 type IV pilus biogenesis protein PilBSubName: Full=Type IV pilus assembly ATPase PilB; chromosome CDS431608 1710 - 0.489474
SO0417 pilin, putativeSubName: Full=Type IV pilin protein PilA; chromosome CDS433391 417 - 0.446043
SO0518 outer membrane efflux family protein, putativeSubName: Full=Heavy metal efflux pump secretin component CzcC family; chromosome CDS539029 1359 + 0.502575
SO0822 outer membrane efflux family proteinSubName: Full=ABC-type macrolide export system secretin component MacC; chromosome CDS838167 1419 + 0.523608
SO0850 hypothetical proteinSubName: Full=Type IV pilin-associated adhesin; chromosome CDS872300 1629 - 0.480049
SO0851 hypothetical protein chromosome CDS873944 558 - 0.476703
SO0853 pilin, putativeSubName: Full=PilD processed protein; chromosome CDS874887 435 - 0.466667
SO0854 type IV pilin, putativeSubName: Full=PilD processed protein; chromosome CDS875323 372 - 0.489247
SO1028 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1065663 213 + 0.347418
SO1312 TolB domain protein chromosome CDS1367287 1242 + 0.467794
SO1825 MotA/TolQ/ExbB proton channel family proteinSubName: Full=TonB2 energy transduction system inner membrane component TtpC; chromosome CDS1918281 1356 + 0.421091
SO2137 conserved hypothetical protein TIGR00427SubName: Full=6TMS neutral amino acid transporter (NAAT) family protein YchE; chromosome CDS2245143 633 + 0.451817
SO2464 surface protein, putative chromosome CDS2582391 2400 + 0.465417
SO2465 surface protein, putative chromosome CDS2584711 2718 + 0.463576
SO2467 adhesion-related protein chromosome CDS2588101 375 - 0.48
SO2751 MotA/TolQ/ExbB proton channel family proteinSubName: Full=TolA energy-transducing system inner membrane component TolQ; chromosome CDS2872001 687 - 0.429403
SO2924 signal peptidase I family proteinSubName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS3056116 663 - 0.440422
SO2933 sohB protein, peptidase U7 familySubName: Full=Inner membrane anchored endopeptidase SohB; EC=3.4.21.-; chromosome CDS3067935 1029 - 0.446064
SO2964 ClpP protease family proteinRecName: Full=ATP-dependent Clp protease proteolytic subunit; chromosome CDS3097955 855 - 0.494737
SO3303 chitinase domain proteinSubName: Full=Cell surface protein; chromosome CDS3451929 2445 - 0.42045
SO3314 fimbrial biogenesis and twitching motility protein, putativeSubName: Full=Outer membrane PilQ pilotin PilF; chromosome CDS3466069 789 - 0.463878
SO3477 pilin biogenesis protein-related protein chromosome CDS3622553 1791 - 0.481854
SO3520 type IV pilus biogenesis protein, putativeSubName: Full=Type IV minor pilin protein FimT; chromosome CDS3674719 513 + 0.405458
SO3521 type IV pilus biogenesis protein, putativeSubName: Full=Type IV pilus biogenesis protein FimU; chromosome CDS3675517 495 + 0.40202
SO3525 type IV pilin biogenesis protein, putativeSubName: Full=Type IV pili system adhesin PilY; chromosome CDS3678173 3507 - 0.406045
SO3527 hypothetical protein chromosome CDS3682156 939 - 0.404686
SO3800 serine protease, subtilase familySubName: Full=Surface-associated serine protease; chromosome CDS3952311 3648 + 0.450384
SO4025 OmpA-like transmembrane domain protein chromosome CDS4177259 4443 + 0.468827
SO4090 outer membrane efflux proteinSubName: Full=ABC-type efflux system secretin component; chromosome CDS4244212 1422 - 0.49789
SO4121 hypothetical proteinSubName: Full=Protein with C-terminal FimV core domain; chromosome CDS4279454 1038 - 0.467245
SO4130 conserved hypothetical proteinSubName: Full=Putative membrane protein Nfed superfamily; chromosome CDS4287991 465 - 0.492473
SO4149 RTX toxin, putativeSubName: Full=Secreted VCBS domain protein; chromosome CDS4309601 15063 + 0.596959
SO4317 RTX toxin, putativeSubName: Full=Biofilm-promoting protein BpfA; chromosome CDS4495152 8307 + 0.504033
SO4476 spheroplast protein y precursor, putativeSubName: Full=Periplasmic stress adaptor protein CpxP; chromosome CDS4664291 492 - 0.473577
SO4579 fimbrial protein, putativeSubName: Full=P pilus subunit FimA; chromosome CDS4773582 561 - 0.449198
SOA0052 hypothetical protein megaplasmid CDS44152 861 - 0.371661
SOA0058 hypothetical protein megaplasmid CDS47223 765 + 0.445752
aggA agglutination proteinSubName: Full=Type I protein secretion system secretin component AggA; chromosome CDS4507146 1416 + 0.457627
ccmD heme exporter protein CcmDSubName: Full=ABC-type heme export system CcmE-interacting component CcmD; chromosome CDS261023 201 - 0.437811
clpP ATP-dependent Clp protease, proteolytic subunitRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS1882001 609 + 0.431855
exbB1 TonB system transport protein ExbB1SubName: Full=TonB1 energy transduction system for heme uptake inner membrane component ExbB; chromosome CDS3824746 783 + 0.484036
exbB2 TonB system transport protein ExbB2 chromosome CDS1919681 483 + 0.478261
exbD1 TonB system transport protein ExbD1SubName: Full=TonB1 energy transduction system for heme uptake inner membrane component ExbD; chromosome CDS3825525 438 + 0.477169
exbD2 TonB system transport protein ExbD2SubName: Full=TonB2 energy transduction system membrane anchored component ExbD; chromosome CDS1920177 405 + 0.434568
ffh signal recognition particle protein FfhRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS1411844 1374 + 0.494905
flgM negative regulator of flagellin synthesis FlgMSubName: Full=Flagellar biosynthesis anti-sigma factor FlgM; chromosome CDS3391687 321 + 0.429907
flhA flagellar biosynthesis protein FlhASubName: Full=Flagellar export protein FlhA; chromosome CDS3353135 2100 - 0.463333
flhB flagellar biosynthetic protein FlhBSubName: Full=Flagellar export protein FlhB; chromosome CDS3355612 1131 - 0.471264
fliE flagellar hook-basal body complex protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS3368304 339 - 0.433628
fliF flagellar M-ring protein FliF chromosome CDS3366570 1662 - 0.487966
fliH flagellar assembly protein FliHSubName: Full=Flagellar assembly protein FliH; chromosome CDS3364594 951 - 0.474238
fliI flagellum-specific ATP synthase FliISubName: Full=Flagellar protein export ATPase FliI; EC=3.6.3.14; chromosome CDS3363288 1338 - 0.523916
fliJ flagellar protein FliJSubName: Full=Flagellar chaperone escort protein FliJ; chromosome CDS3362833 444 - 0.445946
fliN flagellar motor switch protein FliNSubName: Full=Flagellar motor switching and energizing component FliN; chromosome CDS3359041 375 - 0.485333
fliP flagellar biosynthetic protein FliP chromosome CDS3357856 744 - 0.439516
fliQ flagellar biosynthetic protein FliQSubName: Full=Flagellar export protein FliQ; chromosome CDS3357569 270 - 0.440741
fliR flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS3356767 798 - 0.458647
fliS flagellar protein FliSSubName: Full=Chaperone for FliC flagellin FliS; chromosome CDS3373086 411 - 0.389294
ftsY cell division protein FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS4780987 1533 - 0.493151
gspA general secretion pathway protein aSubName: Full=T2aSS secretion system protein A GspA; chromosome CDS1347147 1665 + 0.456456
gspC general secretion pathway protein CSubName: Full=T2aSS secretion system protein GspC; chromosome CDS171350 927 + 0.453074
gspD general secretion pathway protein DSubName: Full=T2aSS secretion system secretin GspD; chromosome CDS172301 2115 + 0.476123
gspE general secretion pathway protein ESubName: Full=T2aSS secretion system assembly ATPase GspE; chromosome CDS174412 1566 + 0.501916
gspF general secretion pathway protein FSubName: Full=T2aSS secretion system inner membrane platform protein GspF; chromosome CDS175981 1224 + 0.506536
gspG general secretion pathway protein GSubName: Full=T2aSS secretion system pseudopilus protein GspG; chromosome CDS177279 435 + 0.436782
gspH general secretion pathway protein HSubName: Full=T2aSS secretion system pseudopilus protein GspH; chromosome CDS177715 573 + 0.472949
gspI general secretion pathway protein ISubName: Full=T2aSS secretion system pseudopilus protein GspI; chromosome CDS178274 369 + 0.474255
gspJ general secretion pathway protein JSubName: Full=T2aSS secretion system protein GspJ; chromosome CDS178623 768 + 0.483073
gspK general secretion pathway protein KRecName: Full=Type II secretion system protein K; chromosome CDS179387 999 + 0.471471
gspL general secretion pathway protein LRecName: Full=Type II secretion system protein L; Short=T2SS protein L; chromosome CDS180434 1188 + 0.501683
gspM general secretion pathway protein MRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; chromosome CDS181623 477 + 0.507338
lepB signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS1404007 918 + 0.477124
lspA lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS3685286 513 - 0.409357
mshC MSHA pilin protein MshCSubName: Full=MSHA minor pilin protein MshC; chromosome CDS4263135 474 - 0.447257
mshD MSHA pilin protein MshDSubName: Full=MshA minor pilin protein MshD; chromosome CDS4262579 567 - 0.472663
mshE MSHA biogenesis protein MshESubName: Full=MSHA pilus assembly ATPase MshE; chromosome CDS4266832 1761 - 0.488359
mshG MSHA biogenesis protein MshGSubName: Full=MSHA biogenesis protein MshG; chromosome CDS4265609 1221 - 0.478296
mshL MSHA biogenesis protein MshLSubName: Full=MSHA system outer membrane secretin MshL; chromosome CDS4270814 1683 - 0.483066
mshM MSHA biogenesis protein MshMSubName: Full=MSHA biogenesis protein MshM; chromosome CDS4269875 933 - 0.489818
mshO MSHA biogenesis protein MshOSubName: Full=MshA minor pilin protein MshO; chromosome CDS4261731 849 - 0.465253
mshQ MSHA biogenesis protein MshQSubName: Full=MshA pili-associated adhesin MshQ; chromosome CDS4257520 3774 - 0.462374
mtrB outer membrane protein precursor MtrBSubName: Full=Extracellular iron oxide respiratory system outer membrane component MtrB; chromosome CDS1856169 2094 - 0.463228
pilD type 4 prepilin-like proteins leader peptide processing enzymeRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome CDS428993 927 - 0.466019
pilE type IV pilus biogenesis protein PilESubName: Full=Type IV minor pilin protein PilE; chromosome CDS3677770 393 - 0.396947
pilT twitching motility protein PilTSubName: Full=Pilus retraction protein PilT; chromosome CDS3495991 1038 - 0.463391
pilU twitching motility protein PilUSubName: Full=Pilus retraction ATPase PilU; chromosome CDS3494869 1113 - 0.473495
pilZ type IV pilus biogenesis protein pilZSubName: Full=C-di-GMP-binding protein; chromosome CDS2748445 327 - 0.477064
secA preprotein translocase, SecA subunitRecName: Full=Protein translocase subunit SecA; chromosome CDS4383076 2727 - 0.46608
secB protein-export protein SecBRecName: Full=Protein-export protein SecB; chromosome CDS58105 474 + 0.468354
secD-1 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS1235992 1857 + 0.476037
secD-2 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS3239490 1851 - 0.481902
secE preprotein translocase, SecE subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS228741 372 + 0.446237
secF-1 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS1237851 885 + 0.451977
secF-2 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS3238529 948 - 0.454641
secG preprotein translocase, SecG subunitSubName: Full=Preprotein translocase subunit SecG; chromosome CDS1245196 336 + 0.422619
secY preprotein translocase, SecY subunitRecName: Full=Protein translocase subunit SecY; chromosome CDS254733 1341 + 0.43475
sppA signal peptide peptidase SppA, 67K typeRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS2528948 1845 + 0.457995
tatA Sec-independent protein translocase protein TatARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS4369871 267 + 0.430712
tatB Sec-independent protein translocase protein TatBRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS4370144 450 + 0.508889
tatC Sec-independent periplasmic protein translocation protein TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS4370597 750 + 0.452
tolB tolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS2869191 1329 - 0.467269
tolC outer membrane protein TolCSubName: Full=Global secretion system secretin TolC; chromosome CDS4051556 1308 + 0.447248
tolR tolr proteinSubName: Full=TolA energy-transducing system inner membrane component TolR; chromosome CDS2871567 435 - 0.503448
yajC preprotein translocase, YajC subunitSubName: Full=SecDF preprotein translocase-associated protein YajC; chromosome CDS3241358 333 - 0.426426