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2024-05-05 21:10:08

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 115

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0004 inner membrane protein, 60 kDachromosome CDS4058 1626 - 0.45572
SO0017 conserved hypothetical proteinchromosome CDS18941 3150 - 0.465397
SO0034 DNA processing protein DprA, putativechromosome CDS39244 1017 + 0.481809
SO0129 conserved hypothetical protein TIGR00427chromosome CDS136310 594 + 0.456229
SO0281 type IV pilus biogenesis protein PilMchromosome CDS288762 1080 + 0.448148
SO0282 type IV pilus biogenesis protein PilNchromosome CDS289829 585 + 0.42906
SO0283 type IV pilus biogenesis protein PilOchromosome CDS290410 621 + 0.399356
SO0284 type IV pilus biogenesis protein PilPchromosome CDS291030 516 + 0.422481
SO0285 type IV pilus biogenesis protein PilQchromosome CDS291567 2055 + 0.424331
SO0288 damX domain proteinchromosome CDS295460 1413 + 0.47063
SO0415 type IV pilus biogenesis protein PilCchromosome CDS430085 1272 - 0.477201
SO0416 type IV pilus biogenesis protein PilBchromosome CDS431608 1710 - 0.489474
SO0417 pilin, putativechromosome CDS433391 417 - 0.446043
SO0518 outer membrane efflux family protein, putativechromosome CDS539029 1359 + 0.502575
SO0822 outer membrane efflux family proteinchromosome CDS838167 1419 + 0.523608
SO0850 hypothetical proteinchromosome CDS872300 1629 - 0.480049
SO0851 hypothetical proteinchromosome CDS873944 558 - 0.476703
SO0853 pilin, putativechromosome CDS874887 435 - 0.466667
SO0854 type IV pilin, putativechromosome CDS875323 372 - 0.489247
SO1028 hypothetical proteinchromosome CDS1065663 213 + 0.347418
SO1312 TolB domain proteinchromosome CDS1367287 1242 + 0.467794
SO1825 MotA/TolQ/ExbB proton channel family proteinchromosome CDS1918281 1356 + 0.421091
SO2137 conserved hypothetical protein TIGR00427chromosome CDS2245143 633 + 0.451817
SO2464 surface protein, putativechromosome CDS2582391 2400 + 0.465417
SO2465 surface protein, putativechromosome CDS2584711 2718 + 0.463576
SO2467 adhesion-related proteinchromosome CDS2588101 375 - 0.48
SO2751 MotA/TolQ/ExbB proton channel family proteinchromosome CDS2872001 687 - 0.429403
SO2924 signal peptidase I family proteinchromosome CDS3056116 663 - 0.440422
SO2933 sohB protein, peptidase U7 familychromosome CDS3067935 1029 - 0.446064
SO2964 ClpP protease family proteinchromosome CDS3097955 855 - 0.494737
SO3303 chitinase domain proteinchromosome CDS3451929 2445 - 0.42045
SO3314 fimbrial biogenesis and twitching motility protein, putativechromosome CDS3466069 789 - 0.463878
SO3477 pilin biogenesis protein-related proteinchromosome CDS3622553 1791 - 0.481854
SO3520 type IV pilus biogenesis protein, putativechromosome CDS3674719 513 + 0.405458
SO3521 type IV pilus biogenesis protein, putativechromosome CDS3675517 495 + 0.40202
SO3525 type IV pilin biogenesis protein, putativechromosome CDS3678173 3507 - 0.406045
SO3527 hypothetical proteinchromosome CDS3682156 939 - 0.404686
SO3800 serine protease, subtilase familychromosome CDS3952311 3648 + 0.450384
SO4025 OmpA-like transmembrane domain proteinchromosome CDS4177259 4443 + 0.468827
SO4090 outer membrane efflux proteinchromosome CDS4244212 1422 - 0.49789
SO4121 hypothetical proteinchromosome CDS4279454 1038 - 0.467245
SO4130 conserved hypothetical proteinchromosome CDS4287991 465 - 0.492473
SO4149 RTX toxin, putativechromosome CDS4309601 15063 + 0.596959
SO4317 RTX toxin, putativechromosome CDS4495152 8307 + 0.504033
SO4476 spheroplast protein y precursor, putativechromosome CDS4664291 492 - 0.473577
SO4579 fimbrial protein, putativechromosome CDS4773582 561 - 0.449198
SOA0052 hypothetical proteinmegaplasmid CDS44152 861 - 0.371661
SOA0058 hypothetical proteinmegaplasmid CDS47223 765 + 0.445752
aggA agglutination proteinchromosome CDS4507146 1416 + 0.457627
ccmD heme exporter protein CcmDchromosome CDS261023 201 - 0.437811
clpP ATP-dependent Clp protease, proteolytic subunitchromosome CDS1882001 609 + 0.431855
exbB1 TonB system transport protein ExbB1chromosome CDS3824746 783 + 0.484036
exbB2 TonB system transport protein ExbB2chromosome CDS1919681 483 + 0.478261
exbD1 TonB system transport protein ExbD1chromosome CDS3825525 438 + 0.477169
exbD2 TonB system transport protein ExbD2chromosome CDS1920177 405 + 0.434568
ffh signal recognition particle protein Ffhchromosome CDS1411844 1374 + 0.494905
flgM negative regulator of flagellin synthesis FlgMchromosome CDS3391687 321 + 0.429907
flhA flagellar biosynthesis protein FlhAchromosome CDS3353135 2100 - 0.463333
flhB flagellar biosynthetic protein FlhBchromosome CDS3355612 1131 - 0.471264
fliE flagellar hook-basal body complex protein FliEchromosome CDS3368304 339 - 0.433628
fliF flagellar M-ring protein FliFchromosome CDS3366570 1662 - 0.487966
fliH flagellar assembly protein FliHchromosome CDS3364594 951 - 0.474238
fliI flagellum-specific ATP synthase FliIchromosome CDS3363288 1338 - 0.523916
fliJ flagellar protein FliJchromosome CDS3362833 444 - 0.445946
fliN flagellar motor switch protein FliNchromosome CDS3359041 375 - 0.485333
fliP flagellar biosynthetic protein FliPchromosome CDS3357856 744 - 0.439516
fliQ flagellar biosynthetic protein FliQchromosome CDS3357569 270 - 0.440741
fliR flagellar biosynthetic protein FliRchromosome CDS3356767 798 - 0.458647
fliS flagellar protein FliSchromosome CDS3373086 411 - 0.389294
ftsY cell division protein FtsYchromosome CDS4780987 1533 - 0.493151
gspA general secretion pathway protein achromosome CDS1347147 1665 + 0.456456
gspC general secretion pathway protein Cchromosome CDS171350 927 + 0.453074
gspD general secretion pathway protein Dchromosome CDS172301 2115 + 0.476123
gspE general secretion pathway protein Echromosome CDS174412 1566 + 0.501916
gspF general secretion pathway protein Fchromosome CDS175981 1224 + 0.506536
gspG general secretion pathway protein Gchromosome CDS177279 435 + 0.436782
gspH general secretion pathway protein Hchromosome CDS177715 573 + 0.472949
gspI general secretion pathway protein Ichromosome CDS178274 369 + 0.474255
gspJ general secretion pathway protein Jchromosome CDS178623 768 + 0.483073
gspK general secretion pathway protein Kchromosome CDS179387 999 + 0.471471
gspL general secretion pathway protein Lchromosome CDS180434 1188 + 0.501683
gspM general secretion pathway protein Mchromosome CDS181623 477 + 0.507338
lepB signal peptidase Ichromosome CDS1404007 918 + 0.477124
lspA lipoprotein signal peptidasechromosome CDS3685286 513 - 0.409357
mshC MSHA pilin protein MshCchromosome CDS4263135 474 - 0.447257
mshD MSHA pilin protein MshDchromosome CDS4262579 567 - 0.472663
mshE MSHA biogenesis protein MshEchromosome CDS4266832 1761 - 0.488359
mshG MSHA biogenesis protein MshGchromosome CDS4265609 1221 - 0.478296
mshL MSHA biogenesis protein MshLchromosome CDS4270814 1683 - 0.483066
mshM MSHA biogenesis protein MshMchromosome CDS4269875 933 - 0.489818
mshO MSHA biogenesis protein MshOchromosome CDS4261731 849 - 0.465253
mshQ MSHA biogenesis protein MshQchromosome CDS4257520 3774 - 0.462374
mtrB outer membrane protein precursor MtrBchromosome CDS1856169 2094 - 0.463228
pilD type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS428993 927 - 0.466019
pilE type IV pilus biogenesis protein PilEchromosome CDS3677770 393 - 0.396947
pilT twitching motility protein PilTchromosome CDS3495991 1038 - 0.463391
pilU twitching motility protein PilUchromosome CDS3494869 1113 - 0.473495
pilZ type IV pilus biogenesis protein pilZchromosome CDS2748445 327 - 0.477064
secA preprotein translocase, SecA subunitchromosome CDS4383076 2727 - 0.46608
secB protein-export protein SecBchromosome CDS58105 474 + 0.468354
secD-1 protein-export membrane protein SecDchromosome CDS1235992 1857 + 0.476037
secD-2 protein-export membrane protein SecDchromosome CDS3239490 1851 - 0.481902
secE preprotein translocase, SecE subunitchromosome CDS228741 372 + 0.446237
secF-1 protein-export membrane protein SecFchromosome CDS1237851 885 + 0.451977
secF-2 protein-export membrane protein SecFchromosome CDS3238529 948 - 0.454641
secG preprotein translocase, SecG subunitchromosome CDS1245196 336 + 0.422619
secY preprotein translocase, SecY subunitchromosome CDS254733 1341 + 0.43475
sppA signal peptide peptidase SppA, 67K typechromosome CDS2528948 1845 + 0.457995
tatA Sec-independent protein translocase protein TatAchromosome CDS4369871 267 + 0.430712
tatB Sec-independent protein translocase protein TatBchromosome CDS4370144 450 + 0.508889
tatC Sec-independent periplasmic protein translocation protein TatCchromosome CDS4370597 750 + 0.452
tolB tolB proteinchromosome CDS2869191 1329 - 0.467269
tolC outer membrane protein TolCchromosome CDS4051556 1308 + 0.447248
tolR tolr proteinchromosome CDS2871567 435 - 0.503448
yajC preprotein translocase, YajC subunitchromosome CDS3241358 333 - 0.426426