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2024-05-19 00:46:47

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 81

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Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SBO_3850 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS3875339 312 + 0.448718
NA SBO_3851 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3875732 438 + 0.557078
NA SBO_2372 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS2360444 468 - 0.557692
NA SBO_3605 putative adhesinSubName: Full=Putative adhesin; chromosome CDS3618223 4056 + 0.501972
NA SBO_1899 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1880654 372 - 0.478495
NA SBO_1467 possible enzymeSubName: Full=Possible enzyme; chromosome CDS1442865 1257 + 0.518695
NA SBO_3607 putative adhesinSubName: Full=Putative adhesin; chromosome CDS3623570 840 + 0.508333
NA SBO_1900 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1881107 1137 - 0.469657
clpP SBO_0331 ATP-dependent proteolytic subunit of clpA-clpP serine proteaseRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS345525 624 + 0.509615
ecpD SBO_0126 probable pilin chaperoneSubName: Full=Probable pilin chaperone; chromosome CDS140393 741 - 0.442645
exbB SBO_3000 ExbBSubName: Full=ExbB; chromosome CDS3002212 735 - 0.527891
exbD SBO_2999 ExbDSubName: Full=ExbD; chromosome CDS3001780 426 - 0.5
ffh SBO_2746 GTP-binding export factorRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2755204 1362 - 0.543319
fimA SBO_4364 major type 1 subunit fimbrinSubName: Full=Major type 1 subunit fimbrin; chromosome CDS4416896 549 + 0.513661
fimC SBO_4366 periplasmic chaperoneSubName: Full=Periplasmic chaperone; chromosome CDS4418085 726 + 0.442149
fimF SBO_4368 fimbrial morphologySubName: Full=Fimbrial morphology; chromosome CDS4421523 531 + 0.493409
fimG SBO_4369 fimbrial morphologySubName: Full=Fimbrial morphology; chromosome CDS4422066 504 + 0.52381
fimI SBO_4365 fimbrial proteinSubName: Full=Fimbrial protein; chromosome CDS4417410 639 + 0.494523
flgM SBO_1993 anti-FliA factorSubName: Full=Anti-FliA factor; chromosome CDS1966528 330 + 0.533333
flgN SBO_1994 protein of flagellar biosynthesisSubName: Full=Protein of flagellar biosynthesis; chromosome CDS1966862 417 + 0.47482
flhA SBO_1121 FlhASubName: Full=FlhA; chromosome CDS1124544 2079 + 0.546417
flhB SBO_1120 putative part of export apparatus for flagellar proteinsSubName: Full=Putative part of export apparatus for flagellar proteins; chromosome CDS1123520 1032 + 0.54845
fliE SBO_1071 FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS1082649 315 + 0.549206
fliF SBO_1070 FliFRecName: Full=Flagellar M-ring protein; chromosome CDS1080776 1659 - 0.547318
fliJ SBO_1065 flagellar fliJ proteinSubName: Full=Flagellar fliJ protein; chromosome CDS1076028 444 - 0.529279
fliN SBO_1061 FliNSubName: Full=FliN; chromosome CDS1072920 414 - 0.548309
fliQ SBO_1058 flagellar biosynthesisSubName: Full=Flagellar biosynthesis; chromosome CDS1071537 270 - 0.514815
fliR SBO_1057 flagellar biosynthesisRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS1070743 786 - 0.475827
fliS SBO_1081 FliSSubName: Full=FliS; chromosome CDS1090532 411 - 0.501217
ftsY SBO_3461 cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS3452140 1494 - 0.534137
gspE SBO_3013 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS3014040 1353 + 0.592018
gspF SBO_3014 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS3015532 1224 + 0.580065
gspG SBO_3015 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS3016772 456 + 0.519737
gspH SBO_3016 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS3017264 468 + 0.549145
gspI SBO_3017 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS3017791 372 + 0.575269
gspJ SBO_3018 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS3018195 564 + 0.58156
gspK SBO_3019 putative type II secretion proteinRecName: Full=Type II secretion system protein K; chromosome CDS3018827 912 + 0.560307
gspL SBO_3020 GspLSubName: Full=GspL; chromosome CDS3020053 861 + 0.574913
gspM SBO_3021 putative secretion pathway proteinRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; chromosome CDS3020915 537 + 0.540037
hofC SBO_0094 HofCSubName: Full=HofC; chromosome CDS102416 1203 - 0.528678
hofQ SBO_3378 putative transport porteinSubName: Full=Putative transport portein; chromosome CDS3361490 1239 - 0.54318
lepB SBO_2596 leader peptidaseRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS2601414 975 - 0.515897
lpfA SBO_3546 putative major fimbrial subunitSubName: Full=Putative major fimbrial subunit; chromosome CDS3556159 543 - 0.489871
lspA SBO_0026 prolipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS25299 495 + 0.533333
ppdA SBO_2718 prepilin peptidase dependent protein ASubName: Full=Prepilin peptidase dependent protein A; chromosome CDS2728955 471 - 0.541401
prlA SBO_3294 putative ATPase subunit of translocaseRecName: Full=Protein translocase subunit SecY; chromosome CDS3291048 1332 - 0.496997
secA SBO_0086 preprotein translocaseRecName: Full=Protein translocase subunit SecA; chromosome CDS96282 2706 + 0.523282
secB SBO_3615 SecBRecName: Full=Protein-export protein SecB; chromosome CDS3632446 468 - 0.512821
secD SBO_0302 SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS316618 1848 + 0.531926
secE SBO_4001 preprotein translocaseRecName: Full=Protein translocase subunit SecE; chromosome CDS4035780 384 + 0.554688
secF SBO_0303 SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS318476 972 + 0.516461
secG SBO_3207 SecGSubName: Full=SecG; chromosome CDS3212486 333 + 0.504505
sigA SBO_0233 serine proteaseSubName: Full=Serine protease; chromosome CDS247479 3858 + 0.416796
sigA SBO_4150 serine proteaseSubName: Full=Serine protease; chromosome CDS4196985 3858 + 0.416796
smf SBO_3279 Predicted Rossmann-fold nucleotide-binding protein involved in DNA uptakeSubName: Full=Predicted Rossmann-fold nucleotide-binding protein involved in DNA uptake; chromosome CDS3280718 1125 - 0.508444
sohB SBO_1794 putative proteaseSubName: Full=Putative protease; chromosome CDS1773322 1050 - 0.502857
sppA SBO_1321 protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1305019 1857 - 0.519117
spy SBO_1347 SpySubName: Full=Spy; chromosome CDS1331191 471 + 0.505308
tolB SBO_0599 TolBRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS622309 1293 + 0.531322
tolC SBO_2893 TolCSubName: Full=TolC; chromosome CDS2896090 1488 + 0.514785
tolQ SBO_0596 TolQSubName: Full=TolQ; chromosome CDS619746 693 + 0.500722
tolR SBO_0597 TolRSubName: Full=TolR; chromosome CDS620442 429 + 0.517483
yaiU SBO_0269 putative flagellin structural proteinSubName: Full=Putative flagellin structural protein; chromosome CDS282183 1407 + 0.496091
yajC SBO_0301 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS316258 333 + 0.495495
ybbJ SBO_0390 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS408223 456 - 0.574561
ybeC SBO_0491 conserved hypothetical proteinRecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS509357 204 + 0.495098
ycbF SBO_2287 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS2275664 738 - 0.517615
ychE SBO_1827 putative channel proteinSubName: Full=Putative channel protein; chromosome CDS1804596 648 - 0.479938
ydeB SBO_1647 conserved hypothetical proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1633735 666 - 0.507508
yejO SBO_2117 putative ATP-binding component of a transport systemSubName: Full=Putative ATP-binding component of a transport system; chromosome CDS2095354 2334 + 0.489289
yfcS SBO_2375 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS2361918 753 - 0.569721
yfcU SBO_2376 PapC-like porin proteinSubName: Full=PapC-like porin protein; chromosome CDS2362690 2643 - 0.51154
yggR SBO_3039 putative protein transportSubName: Full=Uncharacterized protein; chromosome CDS3038416 1026 + 0.545809
ygiL SBO_2901 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS2903381 579 + 0.447323
yhgN SBO_3432 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3424561 594 + 0.503367
yidC SBO_3671 60 kDa inner-membrane proteinRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS3686200 1647 - 0.537948
yigU SBO_3852 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS3876172 777 + 0.5148
yiiO SBO_3931 Uncharacterized periplasmic proteinSubName: Full=Uncharacterized periplasmic protein; chromosome CDS3959393 504 + 0.498016
yjaI SBO_4023 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4059687 567 - 0.516755
yraJ SBO_3240 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS3245051 2334 - 0.476007
yrfC SBO_3381 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3363458 540 - 0.553704