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2024-05-05 16:37:46

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella boydii Sb227, Sb227

Number of genes found: 81

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella boydii Sb227, Sb227
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SBO_3605 putative adhesinchromosome CDS3618223 4056 + 0.501972
NA SBO_3851 conserved hypothetical proteinchromosome CDS3875732 438 + 0.557078
NA SBO_2372 putative fimbrial-like proteinchromosome CDS2360444 468 - 0.557692
NA SBO_3850 conserved hypothetical proteinchromosome CDS3875339 312 + 0.448718
NA SBO_1900 conserved hypothetical proteinchromosome CDS1881107 1137 - 0.469657
NA SBO_1899 conserved hypothetical proteinchromosome CDS1880654 372 - 0.478495
NA SBO_1467 possible enzymechromosome CDS1442865 1257 + 0.518695
NA SBO_3607 putative adhesinchromosome CDS3623570 840 + 0.508333
clpP SBO_0331 ATP-dependent proteolytic subunit of clpA-clpP serine proteasechromosome CDS345525 624 + 0.509615
ecpD SBO_0126 probable pilin chaperonechromosome CDS140393 741 - 0.442645
exbB SBO_3000 ExbBchromosome CDS3002212 735 - 0.527891
exbD SBO_2999 ExbDchromosome CDS3001780 426 - 0.5
ffh SBO_2746 GTP-binding export factorchromosome CDS2755204 1362 - 0.543319
fimA SBO_4364 major type 1 subunit fimbrinchromosome CDS4416896 549 + 0.513661
fimC SBO_4366 periplasmic chaperonechromosome CDS4418085 726 + 0.442149
fimF SBO_4368 fimbrial morphologychromosome CDS4421523 531 + 0.493409
fimG SBO_4369 fimbrial morphologychromosome CDS4422066 504 + 0.52381
fimI SBO_4365 fimbrial proteinchromosome CDS4417410 639 + 0.494523
flgM SBO_1993 anti-FliA factorchromosome CDS1966528 330 + 0.533333
flgN SBO_1994 protein of flagellar biosynthesischromosome CDS1966862 417 + 0.47482
flhA SBO_1121 FlhAchromosome CDS1124544 2079 + 0.546417
flhB SBO_1120 putative part of export apparatus for flagellar proteinschromosome CDS1123520 1032 + 0.54845
fliE SBO_1071 FliEchromosome CDS1082649 315 + 0.549206
fliF SBO_1070 FliFchromosome CDS1080776 1659 - 0.547318
fliJ SBO_1065 flagellar fliJ proteinchromosome CDS1076028 444 - 0.529279
fliN SBO_1061 FliNchromosome CDS1072920 414 - 0.548309
fliQ SBO_1058 flagellar biosynthesischromosome CDS1071537 270 - 0.514815
fliR SBO_1057 flagellar biosynthesischromosome CDS1070743 786 - 0.475827
fliS SBO_1081 FliSchromosome CDS1090532 411 - 0.501217
ftsY SBO_3461 cell division membrane proteinchromosome CDS3452140 1494 - 0.534137
gspE SBO_3013 putative type II secretion proteinchromosome CDS3014040 1353 + 0.592018
gspF SBO_3014 putative type II secretion proteinchromosome CDS3015532 1224 + 0.580065
gspG SBO_3015 putative type II secretion proteinchromosome CDS3016772 456 + 0.519737
gspH SBO_3016 putative type II secretion proteinchromosome CDS3017264 468 + 0.549145
gspI SBO_3017 putative type II secretion proteinchromosome CDS3017791 372 + 0.575269
gspJ SBO_3018 putative type II secretion proteinchromosome CDS3018195 564 + 0.58156
gspK SBO_3019 putative type II secretion proteinchromosome CDS3018827 912 + 0.560307
gspL SBO_3020 GspLchromosome CDS3020053 861 + 0.574913
gspM SBO_3021 putative secretion pathway proteinchromosome CDS3020915 537 + 0.540037
hofC SBO_0094 HofCchromosome CDS102416 1203 - 0.528678
hofQ SBO_3378 putative transport porteinchromosome CDS3361490 1239 - 0.54318
lepB SBO_2596 leader peptidasechromosome CDS2601414 975 - 0.515897
lpfA SBO_3546 putative major fimbrial subunitchromosome CDS3556159 543 - 0.489871
lspA SBO_0026 prolipoprotein signal peptidasechromosome CDS25299 495 + 0.533333
ppdA SBO_2718 prepilin peptidase dependent protein Achromosome CDS2728955 471 - 0.541401
prlA SBO_3294 putative ATPase subunit of translocasechromosome CDS3291048 1332 - 0.496997
secA SBO_0086 preprotein translocasechromosome CDS96282 2706 + 0.523282
secB SBO_3615 SecBchromosome CDS3632446 468 - 0.512821
secD SBO_0302 SecDchromosome CDS316618 1848 + 0.531926
secE SBO_4001 preprotein translocasechromosome CDS4035780 384 + 0.554688
secF SBO_0303 SecFchromosome CDS318476 972 + 0.516461
secG SBO_3207 SecGchromosome CDS3212486 333 + 0.504505
sigA SBO_4150 serine proteasechromosome CDS4196985 3858 + 0.416796
sigA SBO_0233 serine proteasechromosome CDS247479 3858 + 0.416796
smf SBO_3279 Predicted Rossmann-fold nucleotide-binding protein involved in DNA uptakechromosome CDS3280718 1125 - 0.508444
sohB SBO_1794 putative proteasechromosome CDS1773322 1050 - 0.502857
sppA SBO_1321 protease IVchromosome CDS1305019 1857 - 0.519117
spy SBO_1347 Spychromosome CDS1331191 471 + 0.505308
tolB SBO_0599 TolBchromosome CDS622309 1293 + 0.531322
tolC SBO_2893 TolCchromosome CDS2896090 1488 + 0.514785
tolQ SBO_0596 TolQchromosome CDS619746 693 + 0.500722
tolR SBO_0597 TolRchromosome CDS620442 429 + 0.517483
yaiU SBO_0269 putative flagellin structural proteinchromosome CDS282183 1407 + 0.496091
yajC SBO_0301 conserved hypothetical proteinchromosome CDS316258 333 + 0.495495
ybbJ SBO_0390 conserved hypothetical proteinchromosome CDS408223 456 - 0.574561
ybeC SBO_0491 conserved hypothetical proteinchromosome CDS509357 204 + 0.495098
ycbF SBO_2287 putative chaperonechromosome CDS2275664 738 - 0.517615
ychE SBO_1827 putative channel proteinchromosome CDS1804596 648 - 0.479938
ydeB SBO_1647 conserved hypothetical proteinchromosome CDS1633735 666 - 0.507508
yejO SBO_2117 putative ATP-binding component of a transport systemchromosome CDS2095354 2334 + 0.489289
yfcS SBO_2375 putative chaperonechromosome CDS2361918 753 - 0.569721
yfcU SBO_2376 PapC-like porin proteinchromosome CDS2362690 2643 - 0.51154
yggR SBO_3039 putative protein transportchromosome CDS3038416 1026 + 0.545809
ygiL SBO_2901 putative fimbrial-like proteinchromosome CDS2903381 579 + 0.447323
yhgN SBO_3432 conserved hypothetical proteinchromosome CDS3424561 594 + 0.503367
yidC SBO_3671 60 kDa inner-membrane proteinchromosome CDS3686200 1647 - 0.537948
yigU SBO_3852 conserved hypothetical proteinchromosome CDS3876172 777 + 0.5148
yiiO SBO_3931 Uncharacterized periplasmic proteinchromosome CDS3959393 504 + 0.498016
yjaI SBO_4023 conserved hypothetical proteinchromosome CDS4059687 567 - 0.516755
yraJ SBO_3240 putative outer membrane proteinchromosome CDS3245051 2334 - 0.476007
yrfC SBO_3381 conserved hypothetical proteinchromosome CDS3363458 540 - 0.553704