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2024-05-21 05:08:52

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella dysenteriae Sd197, Sd197

Number of genes found: 91

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Shigella dysenteriae Sd197, Sd197
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA SDY_2532 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS2330258 540 - 0.5
NA SDY_0497 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS483003 993 + 0.466264
NA SDY_1077 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1008318 534 + 0.477528
NA SDY_3581 putative DNA processing proteinSubName: Full=Putative DNA processing protein; chromosome CDS3320562 1296 - 0.505401
NA SDY_0424 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS411486 1494 - 0.600402
NA SDY_2536 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2332573 600 - 0.565
NA SDY_2537 putative fimbrial usherSubName: Full=Putative fimbrial usher; chromosome CDS2333151 1731 - 0.553437
NA SDY_1202 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1111815 1020 + 0.464706
NA SDY_4034 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3769333 2508 + 0.524721
NA SDY_3907 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS3638059 312 - 0.448718
NA SDY_0916 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS864732 564 + 0.47695
NA SDY_0423 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS407525 3948 - 0.60613
NA SDY_0912 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS861552 834 + 0.496403
NA SDY_0429 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS416946 621 - 0.555556
NA SDY_4035 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3771929 837 + 0.51374
NA SDY_1374 putative outer membrane channel proteinSubName: Full=Putative outer membrane channel protein; chromosome CDS1270947 828 + 0.536232
NA SDY_3906 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3637540 438 - 0.557078
NA SDY_1891 possible enzymeSubName: Full=Possible enzyme; chromosome CDS1725931 1257 - 0.515513
NA SDY_0422 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS403103 4398 - 0.617326
NA SDY_2533 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2330794 489 - 0.494888
NA SDY_0428 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS416643 294 - 0.465986
NA SDY_0915 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS864263 510 + 0.478431
NA SDY_0498 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS484134 684 + 0.502924
NA SDY_1373 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1270401 498 + 0.546185
NA SDY_4570 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4285579 1212 - 0.509901
NA SDY_4033 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3767585 1200 + 0.501667
NA SDY_0425 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS412889 2877 - 0.575947
NA SDY_0151 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS152152 492 - 0.424797
NA SDY_2426 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2226292 654 - 0.503058
ccmD SDY_0880 heme exporter protein CSubName: Full=Heme exporter protein C; chromosome CDS828374 210 + 0.561905
clpP SDY_0295 ATP-dependent proteolytic subunit of clpA-clpP serine proteaseRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS288947 624 - 0.508013
exbB SDY_3067 ExbBSubName: Full=ExbB; chromosome CDS2845226 735 + 0.530612
exbD SDY_3068 ExbDSubName: Full=ExbD; chromosome CDS2845967 426 + 0.49061
ffh SDY_2784 GTP-binding export factorRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2577946 1362 - 0.538913
fliS SDY_1090 repressor of class 3a and 3b operonsSubName: Full=Repressor of class 3a and 3b operons; chromosome CDS1017681 411 - 0.498783
ftsY SDY_3615 cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS3351435 1497 - 0.529726
gspC SDY_3092 putative general secretion protein GspCSubName: Full=Putative general secretion protein GspC; chromosome CDS2867995 831 + 0.519856
gspD SDY_3093 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2869065 1836 + 0.559368
gspE SDY_3094 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2870900 1494 + 0.586345
gspF SDY_3095 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2872393 1200 + 0.589167
gspG SDY_3096 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2873633 456 + 0.517544
gspH SDY_3097 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2874125 531 + 0.551789
gspI SDY_3098 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2874652 372 + 0.569892
gspJ SDY_3099 putative type II secretion proteinSubName: Full=Putative type II secretion protein; chromosome CDS2875056 570 + 0.575439
gspK SDY_3100 putative type II secretion proteinRecName: Full=Type II secretion system protein K; chromosome CDS2875622 978 + 0.55317
gspL SDY_3101 putative general secretion pathway for protein export (GSP)SubName: Full=Putative general secretion pathway for protein export (GSP); chromosome CDS2876914 861 + 0.567944
gspM SDY_3102 putative secretion pathway proteinSubName: Full=Putative secretion pathway protein; chromosome CDS2877890 423 + 0.539007
hofB SDY_0137 HofBSubName: Full=HofB; chromosome CDS136297 1335 - 0.539326
lepB SDY_2809 leader peptidaseRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS2599176 975 - 0.518974
lspA SDY_0049 prolipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS43996 495 + 0.529293
nfrB SDY_0266 bacteriophage N4 receptorSubName: Full=Bacteriophage N4 receptor; chromosome CDS260895 1965 - 0.533842
ppdA SDY_3043 prepilin peptidase dependent protein ASubName: Full=Prepilin peptidase dependent protein A; chromosome CDS2820335 471 - 0.541401
ppdB SDY_3042 prepilin peptidase dependent protein BSubName: Full=Prepilin peptidase dependent protein B; chromosome CDS2819781 564 - 0.52305
ppdD SDY_0138 prelipin peptidase dependent proteinSubName: Full=Prelipin peptidase dependent protein; chromosome CDS137641 441 - 0.52381
prlA SDY_3476 putative ATPase subunit of translocaseRecName: Full=Protein translocase subunit SecY; chromosome CDS3225204 1332 - 0.496246
secA SDY_0128 preprotein translocaseRecName: Full=Protein translocase subunit SecA; chromosome CDS128932 2706 + 0.521434
secB SDY_4042 SecBRecName: Full=Protein-export protein SecB; chromosome CDS3779442 468 - 0.508547
secD SDY_0326 SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS314415 1848 - 0.531385
secE SDY_3747 preprotein translocaseRecName: Full=Protein translocase subunit SecE; chromosome CDS3480927 384 - 0.554688
secF SDY_0325 protein secretion, membrane proteinRecName: Full=Protein-export membrane protein SecF; chromosome CDS313433 972 - 0.514403
secG SDY_3356 protein export-membrane proteinSubName: Full=Protein export-membrane protein; chromosome CDS3113578 333 - 0.498498
sfmC SDY_0256 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS253042 366 + 0.434426
smf SDY_3462 predicted Rossmann-fold nucleotide-binding proteinSubName: Full=Predicted Rossmann-fold nucleotide-binding protein; chromosome CDS3214872 1125 - 0.511111
sohB SDY_1342 putative proteaseSubName: Full=Putative protease; chromosome CDS1239881 1041 + 0.49952
sppA SDY_1507 protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1378879 1857 - 0.519655
spy SDY_1534 SpySubName: Full=Spy; chromosome CDS1406110 486 + 0.506173
tolB SDY_0688 periplasmic proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS650368 1293 + 0.53519
tolC SDY_3205 outer membrane channelSubName: Full=Outer membrane channel; chromosome CDS2967943 1488 - 0.513441
tolQ SDY_0685 inner membrane proteinSubName: Full=Inner membrane protein; chromosome CDS647781 693 + 0.502164
tolR SDY_0686 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS648477 429 + 0.515152
yajC SDY_0327 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS316290 333 - 0.495495
ybbJ SDY_0411 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS394660 459 + 0.586057
ybeC SDY_0549 conserved hypothetical proteinRecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS531613 204 + 0.490196
ybgD SDY_0655 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS618980 567 - 0.455026
ybgP SDY_0652 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS614951 696 - 0.521552
ycbF SDY_0917 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS865261 738 + 0.512195
ydeB SDY_1598 conserved hypothetical proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1460589 666 + 0.5
yehB SDY_2287 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS2077541 1794 - 0.458751
yejO SDY_0889 putative ATP-binding component of a transport systemSubName: Full=Putative ATP-binding component of a transport system; chromosome CDS835867 2055 + 0.492457
yfaL SDY_2425 putative ATP-binding component of a transport systemSubName: Full=Putative ATP-binding component of a transport system; chromosome CDS2223994 2163 - 0.54184
yfcS SDY_2535 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS2331801 750 - 0.52
yggR SDY_3121 putative protein transportSubName: Full=Uncharacterized protein; chromosome CDS2894543 1026 + 0.549708
yhgN SDY_3580 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3319923 594 + 0.501683
yidC SDY_4188 60 KD inner-membrane proteinRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS3920955 1647 + 0.536733
yigU SDY_3905 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS3636761 777 - 0.516088
yiiO SDY_3833 Uncharacterized periplasmic proteinSubName: Full=Uncharacterized periplasmic protein; chromosome CDS3565926 504 - 0.501984
yjaI SDY_3724 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3456081 561 + 0.511586
yohG SDY_2150 putative channel/filament proteinsSubName: Full=Putative channel/filament proteins; chromosome CDS1948211 921 + 0.537459
yohH SDY_2149 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1947773 345 + 0.492754
ypjA SDY_1204 putative ATP-binding component of a transport systemSubName: Full=Putative ATP-binding component of a transport system; chromosome CDS1113426 2595 + 0.522158
yraK SDY_3324 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS3082053 1092 + 0.477106