Gene list
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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli W3110, K-12
Number of genes found: 110
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Escherichia coli W3110, K-12 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
ccmD | cytochrome c biogenesis protein | chromosome | CDS | 2298711 | 210 | - | 0.571429 | |
clpP | proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases | chromosome | CDS | 455901 | 624 | + | 0.511218 | |
cpxP | periplasmic protein combats stress | chromosome | CDS | 3530361 | 501 | - | 0.500998 | |
cusC | copper/silver efflux system, outer membrane component | chromosome | CDS | 594823 | 1374 | + | 0.512373 | |
ecpD | predicted periplasmic pilin chaperone | chromosome | CDS | 155461 | 741 | - | 0.443995 | |
exbB | membrane spanning protein in TonB-ExbB-ExbD complex | chromosome | CDS | 3149906 | 735 | - | 0.530612 | |
exbD | membrane spanning protein in TonB-ExbB-ExbD complex | chromosome | CDS | 3149474 | 426 | - | 0.502347 | |
ffh | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) | chromosome | CDS | 2745090 | 1362 | - | 0.54185 | |
fimA | major type 1 subunit fimbrin | chromosome | CDS | 4547795 | 549 | + | 0.517304 | |
fimC | chaperone, periplasmic | chromosome | CDS | 4548984 | 726 | + | 0.444904 | |
fimD | outer membrane usher protein, type 1 fimbrial synthesis | chromosome | CDS | 4549776 | 2637 | + | 0.486159 | |
fimF | minor component of type 1 fimbriae | chromosome | CDS | 4552422 | 531 | + | 0.495292 | |
fimG | minor component of type 1 fimbriae | chromosome | CDS | 4552965 | 504 | + | 0.52381 | |
flgM | anti-sigma factor for FliA (sigma 28) | chromosome | CDS | 1131412 | 294 | - | 0.527211 | |
flgN | export chaperone for FlgK and FlgL | chromosome | CDS | 1130991 | 417 | - | 0.482014 | |
flhA | predicted flagellar export pore protein | chromosome | CDS | 1964686 | 2079 | - | 0.548822 | |
flhB | predicted flagellar export pore protein | chromosome | CDS | 1966757 | 1149 | - | 0.549173 | |
fliE | flagellar basal-body component | chromosome | CDS | 2014837 | 315 | - | 0.539683 | |
fliF | flagellar basal-body MS-ring and collar protein | chromosome | CDS | 2015366 | 1659 | + | 0.546112 | |
fliI | flagellum-specific ATP synthase | chromosome | CDS | 2018691 | 1374 | + | 0.585881 | |
fliJ | flagellar protein | chromosome | CDS | 2020083 | 444 | + | 0.515766 | |
fliN | flagellar motor switching and energizing component | chromosome | CDS | 2023225 | 414 | + | 0.550725 | |
fliP | flagellar biosynthesis protein | chromosome | CDS | 2024006 | 738 | + | 0.531165 | |
fliQ | flagellar biosynthesis protein | chromosome | CDS | 2024753 | 270 | + | 0.503704 | |
fliR | flagellar export pore protein | chromosome | CDS | 2025030 | 786 | + | 0.474555 | |
fliS | flagellar protein potentiates polymerization | chromosome | CDS | 2007440 | 411 | + | 0.498783 | |
flu | antigen 43 (Ag43) phase-variable biofilm formation autotransporter | chromosome | CDS | 2073676 | 3120 | + | 0.582372 | |
ftsY | fused Signal Recognition Particle (SRP) receptor | chromosome | CDS | 4036172 | 1494 | + | 0.534806 | |
gspC | general secretory pathway component, cryptic | chromosome | CDS | 4184023 | 816 | - | 0.42402 | |
gspE | general secretory pathway component, cryptic | chromosome | CDS | 4180596 | 1482 | - | 0.524966 | |
gspF | general secretory pathway component, cryptic | chromosome | CDS | 4179403 | 1197 | - | 0.510443 | |
gspG | pseudopilin, cryptic, general secretion pathway | chromosome | CDS | 4178956 | 438 | - | 0.486301 | |
gspH | predicted general secretory pathway component, cryptic | chromosome | CDS | 4178439 | 510 | - | 0.560784 | |
gspJ | predicted general secretory pathway component, cryptic | chromosome | CDS | 4177485 | 588 | - | 0.503401 | |
gspK | general secretory pathway component, cryptic | chromosome | CDS | 4176509 | 984 | - | 0.502033 | |
gspO | bifunctional prepilin leader peptidase and methylase | chromosome | CDS | 4174196 | 678 | - | 0.504425 | |
hofB | conserved hypothetical protein with nucleoside triphosphate hydrolase domain | chromosome | CDS | 115714 | 1386 | - | 0.534632 | |
hofC | assembly protein in type IV pilin biogenesis, transmembrane protein | chromosome | CDS | 114522 | 1203 | - | 0.519534 | |
hofQ | predicted fimbrial transporter | chromosome | CDS | 4119713 | 1239 | + | 0.544794 | |
htrE | predicted outer membrane usher protein | chromosome | CDS | 152829 | 2598 | - | 0.43341 | |
lepB | leader peptidase | chromosome | CDS | 2702991 | 975 | - | 0.52 | |
lspA | prolipoprotein signal peptidase | chromosome | CDS | 25207 | 495 | + | 0.535354 | |
marC | predicted transporter | chromosome | CDS | 1619957 | 666 | - | 0.510511 | |
nfrB | bacteriophage N4 receptor, inner membrane subunit | chromosome | CDS | 590164 | 2238 | - | 0.525022 | |
ppdA | conserved hypothetical protein | chromosome | CDS | 2962363 | 471 | - | 0.541401 | |
ppdB | conserved hypothetical protein | chromosome | CDS | 2961809 | 564 | - | 0.52305 | |
ppdD | predicted major pilin subunit | chromosome | CDS | 117109 | 441 | - | 0.530612 | |
secA | preprotein translocase subunit, ATPase that targets protein precursors to the SecYE core translocon | chromosome | CDS | 108279 | 2706 | + | 0.524021 | |
secB | protein export chaperone | chromosome | CDS | 3856287 | 468 | + | 0.508547 | |
secD | SecYEG protein translocase auxillary subunit | chromosome | CDS | 426871 | 1848 | + | 0.531926 | |
secE | preprotein translocase membrane subunit | chromosome | CDS | 3458940 | 384 | - | 0.549479 | |
secF | SecYEG protein translocase auxillary subunit | chromosome | CDS | 428729 | 972 | + | 0.516461 | |
secG | preprotein translocase membrane subunit | chromosome | CDS | 3322028 | 333 | - | 0.495495 | |
secY | preprotein translocase membrane subunit | chromosome | CDS | 4196319 | 1332 | + | 0.496997 | |
sfmA | predicted fimbrial-like adhesin protein | chromosome | CDS | 557435 | 543 | + | 0.445672 | |
sfmC | pilin chaperone, periplasmic | chromosome | CDS | 558197 | 693 | + | 0.425685 | |
sfmD | predicted outer membrane export usher protein | chromosome | CDS | 558920 | 2604 | + | 0.478111 | |
sfmF | predicted fimbrial-like adhesin protein | chromosome | CDS | 562553 | 516 | + | 0.5 | |
smf | conserved hypothetical protein | chromosome | CDS | 4206856 | 1125 | + | 0.509333 | |
sohB | predicted inner membrane peptidase | chromosome | CDS | 1331046 | 1050 | + | 0.505714 | |
sppA | protease IV | chromosome | CDS | 1850551 | 1857 | + | 0.517501 | |
spy | envelope stress induced periplasmic protein | chromosome | CDS | 1826854 | 486 | - | 0.50823 | |
tatA | TatABCE protein translocation system subunit | chromosome | CDS | 3614467 | 270 | - | 0.455556 | |
tatB | TatABCE protein translocation system subunit | chromosome | CDS | 3613948 | 516 | - | 0.554264 | |
tatC | TatABCE protein translocation system subunit | chromosome | CDS | 3613169 | 777 | - | 0.516088 | |
tatE | TatABCE protein translocation system subunit | chromosome | CDS | 659369 | 204 | + | 0.5 | |
tolB | periplasmic protein | chromosome | CDS | 778162 | 1293 | + | 0.531322 | |
tolQ | membrane spanning protein in TolA-TolQ-TolR complex | chromosome | CDS | 775575 | 693 | + | 0.50505 | |
tolR | membrane spanning protein in TolA-TolQ-TolR complex | chromosome | CDS | 776271 | 429 | + | 0.517483 | |
yadK | predicted fimbrial-like adhesin protein | chromosome | CDS | 151003 | 597 | - | 0.413735 | |
yadN | predicted fimbrial-like adhesin protein | chromosome | CDS | 156299 | 585 | - | 0.447863 | |
yagZ | conserved hypothetical protein | chromosome | CDS | 309308 | 588 | - | 0.528912 | |
yajC | SecYEG protein translocase auxillary subunit | chromosome | CDS | 426511 | 333 | + | 0.495495 | |
ybbJ | conserved inner membrane protein | chromosome | CDS | 513625 | 456 | - | 0.574561 | |
ybgD | predicted fimbrial-like adhesin protein | chromosome | CDS | 752651 | 567 | - | 0.467372 | |
ybgP | predicted assembly protein | chromosome | CDS | 749401 | 729 | - | 0.477366 | |
ycbR | predicted periplasmic pilin chaperone | chromosome | CDS | 998912 | 702 | + | 0.450142 | |
ycbS | predicted outer membrane usher protein | chromosome | CDS | 999638 | 2601 | + | 0.478662 | |
ycbU | predicted fimbrial-like adhesin protein | chromosome | CDS | 1003311 | 543 | + | 0.471455 | |
ycgV | predicted adhesin | chromosome | CDS | 1254662 | 2868 | - | 0.497908 | |
ychE | predicted inner membrane protein | chromosome | CDS | 1300175 | 648 | + | 0.478395 | |
ydeK | predicted lipoprotein | chromosome | CDS | 1595823 | 3978 | - | 0.493213 | |
ydeR | predicted fimbrial-like adhesin protein | chromosome | CDS | 1589507 | 504 | - | 0.448413 | |
ydeS | predicted fimbrial-like adhesin protein | chromosome | CDS | 1590023 | 531 | - | 0.448211 | |
ydeT | hypothetical protein | chromosome | CDS | 1590567 | 1149 | - | 0.445605 | |
ydhQ | conserved hypothetical protein | chromosome | CDS | 1746585 | 1257 | - | 0.513922 | |
yehB | predicted outer membrane protein | chromosome | CDS | 2191764 | 2481 | - | 0.455058 | |
yehC | predicted periplasmic pilin chaperone | chromosome | CDS | 2194260 | 720 | - | 0.393056 | |
yehD | predicted fimbrial-like adhesin protein | chromosome | CDS | 2195014 | 543 | - | 0.405157 | |
yejO | predicted autotransporter outer membrane protein | chromosome | CDS | 2289724 | 2511 | - | 0.483473 | |
yfaL | adhesin | chromosome | CDS | 2345087 | 3753 | - | 0.513722 | |
yfcP | predicted fimbrial-like adhesin protein | chromosome | CDS | 2455497 | 540 | - | 0.487037 | |
yfcS | predicted periplasmic pilus chaperone | chromosome | CDS | 2457030 | 753 | - | 0.50996 | |
yfcT | predicted outer membrane export usher protein | chromosome | CDS | 2457802 | 897 | - | 0.532887 | |
yfcU | predicted export usher protein | chromosome | CDS | 2458711 | 1737 | - | 0.510075 | |
yghD | predicted secretion pathway M-type protein, membrane anchored | chromosome | CDS | 3109246 | 537 | - | 0.532588 | |
yghF | predicted secretion pathway protein, C-type protein | chromosome | CDS | 3110710 | 867 | - | 0.512111 | |
ygiL | predicted fimbrial-like adhesin protein | chromosome | CDS | 3184070 | 552 | + | 0.436594 | |
yhcA | predicted periplasmic chaperone protein | chromosome | CDS | 3361967 | 675 | + | 0.416296 | |
yhcD | predicted outer membrane protein | chromosome | CDS | 3362662 | 2382 | + | 0.45508 | |
yhgN | predicted antibiotic transporter | chromosome | CDS | 4064751 | 594 | - | 0.5 | |
yidC | cytoplasmic insertase into membrane protein, Sec system | chromosome | CDS | 3753693 | 1647 | - | 0.536733 | |
yjcP | predicted outer membrane factor of efflux pump | chromosome | CDS | 4303043 | 1467 | - | 0.557601 | |
yqiG | predicted outer membrane usher protein | chromosome | CDS | 3186056 | 2466 | + | 0.422141 | |
yraH | predicted fimbrial-like adhesin protein | chromosome | CDS | 3287281 | 585 | + | 0.451282 | |
yraI | predicted periplasmic pilin chaperone | chromosome | CDS | 3287945 | 696 | + | 0.442529 | |
yraJ | predicted outer membrane protein | chromosome | CDS | 3288669 | 2517 | + | 0.475963 | |
yraK | predicted fimbrial-like adhesin protein | chromosome | CDS | 3291196 | 1092 | + | 0.478938 | |
yrfC | predicted fimbrial assembly protein | chromosome | CDS | 4118444 | 540 | + | 0.553704 | |
zraP | Zn-binding periplasmic protein | chromosome | CDS | 3434993 | 426 | + | 0.535211 |