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2024-05-09 01:04:37

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli CFT073, CFT073

Number of genes found: 150

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Escherichia coli CFT073, CFT073
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA c4785 Sec-independent protein translocase protein tatARecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS4547755 312 + 0.451923
NA c4786 Sec-independent protein translocase protein tatBRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS4548070 516 + 0.544574
c0319 Putative oligogalacturonide lyaseSubName: Full=Putative oligogalacturonide lyase; chromosome CDS289986 1173 + 0.387894
c0345 Putative member of ShlA/HecA/FhaA exoprotein familySubName: Full=Putative member of ShlA/HecA/FhaA exoprotein family; chromosome CDS312645 9651 + 0.555694
c0350 Pic serine protease precursorRecName: Full=Serine protease pic autotransporter; EC=3.4.21.-; Contains: RecName: Full=Serine protease pic; Contains: RecName: Full=Serine protease pic translocator; Flags: Precursor; chromosome CDS326209 4116 - 0.499514
c0360 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS336046 1248 + 0.455128
c0363 Putative RTX family exoprotein A geneSubName: Full=Putative RTX family exoprotein A protein; chromosome CDS340972 4833 + 0.489137
c0393 Haemoglobin proteaseSubName: Full=Haemoglobin protease; chromosome CDS371877 4131 - 0.48366
c0426 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS410042 2331 - 0.460317
c0478 Putative structural proteinSubName: Full=Putative structural protein; chromosome CDS465478 2988 + 0.459839
c0545 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS527471 600 + 0.528333
c1205 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1159313 2727 + 0.56289
c1206 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1161999 1233 + 0.556367
c1207 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1163191 1614 + 0.519827
c1273 Antigen 43 precursorSubName: Full=Antigen 43; chromosome CDS1225454 3276 + 0.578144
c1448 Putative capsid assembly protein of prophageSubName: Full=Putative capsid assembly protein of prophage; chromosome CDS1352906 1506 + 0.602922
c1468 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1368995 2064 + 0.483043
c1572 Putative capsid assembly protein of prophageSubName: Full=Putative capsid assembly protein of prophage; chromosome CDS1429149 1506 + 0.60093
c1615 Putative conserved proteinSubName: Full=Putative conserved protein; chromosome CDS1459716 528 + 0.49053
c1619 Putative conserved proteinSubName: Full=Putative conserved protein; chromosome CDS1461577 327 + 0.507645
c1765 Partial Putative outer membrane channel proteinSubName: Full=Partial Putative outer membrane channel protein; chromosome CDS1600755 1374 + 0.539301
c1934 Outer membrane usher protein fimD precursorSubName: Full=Outer membrane usher protein fimD; chromosome CDS1774532 2652 - 0.443439
c1935 Chaperone protein fimC precursorSubName: Full=Chaperone protein fimC; chromosome CDS1777225 711 - 0.452883
c1936 Type-1 fimbrial protein, A chain precursorSubName: Full=Type-1 fimbrial protein, A chain; chromosome CDS1778297 612 - 0.444444
c2394 PilV-like proteinSubName: Full=PilV-like protein; chromosome CDS2197781 1464 - 0.441257
c2895 yapH homologSubName: Full=YapH homolog; chromosome CDS2748603 7164 - 0.489671
c3170 Putative capsid protein of prophageSubName: Full=Putative capsid protein of prophage; chromosome CDS3040953 1434 - 0.609484
c3655 Antigen 43 precursorSubName: Full=Antigen 43; chromosome CDS3491808 3129 + 0.582934
c3702 Hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3532178 414 - 0.5
c4208 Putative fimbrial chaperone precursorSubName: Full=Putative fimbrial chaperone; chromosome CDS3993608 798 - 0.388471
c4209 Putative minor fimbrial subunit precursorSubName: Full=Putative minor fimbrial subunit; chromosome CDS3994350 558 - 0.356631
c4210 Putative minor fimbrial subunit precursorSubName: Full=Putative minor fimbrial subunit; chromosome CDS3994873 453 - 0.401766
c4213 Chaperone protein fimC precursorSubName: Full=Chaperone protein fimC; chromosome CDS3998067 780 - 0.382051
c4214 Putative major fimbrial subunit precursorSubName: Full=Putative major fimbrial subunit; chromosome CDS3998920 705 - 0.476596
c4222 Putative DNA processing proteinSubName: Full=Putative DNA processing protein; chromosome CDS4011694 1296 - 0.506173
c4424 Putative adhesinSubName: Full=Putative adhesin; chromosome CDS4205984 5337 + 0.5267
c4518 Conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS4303576 438 - 0.502283
ccmD Heme exporter protein DRecName: Full=Heme exporter protein D; AltName: Full=Cytochrome c-type biogenesis protein CcmD; chromosome CDS2582885 210 - 0.566667
clpP ATP-dependent Clp protease proteolytic subunitRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; Flags: Precursor; chromosome CDS530604 624 + 0.501603
cpxP c4865 Conserved hypothetical proteinRecName: Full=Periplasmic protein CpxP; Flags: Precursor; chromosome CDS4625475 504 + 0.501984
cusC Probable outer membrane lipoprotein cusC precursorRecName: Full=Cation efflux system protein CusC; Flags: Precursor; chromosome CDS639221 1383 + 0.516992
eaeH Putative adhesinSubName: Full=Putative adhesin; chromosome CDS395711 4251 + 0.519878
ecpD Chaperone protein ecpD precursorSubName: Full=Chaperone protein ecpD; chromosome CDS165999 741 - 0.442645
exbB Biopolymer transport exbB proteinSubName: Full=Biopolymer transport exbB protein; chromosome CDS3572894 735 - 0.52381
exbD Biopolymer transport exbD proteinRecName: Full=Biopolymer transport protein ExbD; chromosome CDS3572462 426 - 0.483568
ffh Signal recognition particle proteinRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS3009020 1362 - 0.542584
fhiA FhiA proteinSubName: Full=FhiA protein; chromosome CDS356346 1740 - 0.571839
fimA c5393 Type-1 fimbrial protein, A chain precursorSubName: Full=Type-1 fimbrial protein, A chain; chromosome CDS5137789 606 + 0.493399
fimC c5395 Chaperone protein fimC precursorRecName: Full=Chaperone protein FimC; Flags: Precursor; chromosome CDS5139035 726 + 0.446281
fimD c5396 Outer membrane usher protein fimD precursorSubName: Full=Outer membrane usher protein fimD; chromosome CDS5139826 2637 + 0.482746
fimF c5397 FimF protein precursorSubName: Full=FimF protein; chromosome CDS5142469 534 + 0.490637
fimG c5399 FimG protein precursorSubName: Full=FimG protein; chromosome CDS5143015 504 + 0.521825
fimI c5394 Fimbrin-like protein fimI precursorSubName: Full=Fimbrin-like protein fimI; chromosome CDS5138459 540 + 0.496296
flgN Flagella synthesis protein flgNSubName: Full=Flagella synthesis protein flgN; chromosome CDS1272917 417 - 0.482014
flhA Flagellar biosynthesis protein flhASubName: Full=Flagellar biosynthesis protein flhA; chromosome CDS2113793 2154 - 0.550139
flhB Flagellar biosynthetic protein flhBSubName: Full=Flagellar biosynthetic protein flhB; chromosome CDS2115864 1149 - 0.550914
fliE Flagellar hook-basal body complex protein fliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2164468 345 - 0.536232
fliF Flagellar M-ring proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2164997 1659 + 0.549729
fliH Flagellar assembly protein fliHSubName: Full=Flagellar assembly protein fliH; chromosome CDS2167615 708 + 0.573446
fliI Flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; EC=3.6.3.14; chromosome CDS2168322 1374 + 0.582969
fliJ Flagellar fliJ proteinSubName: Full=Flagellar fliJ protein; chromosome CDS2169714 444 + 0.522523
fliN Flagellar motor switch protein fliNSubName: Full=Flagellar motor switch protein fliN; chromosome CDS2172856 414 + 0.557971
fliP Flagellar biosynthetic protein fliP precursorSubName: Full=Flagellar biosynthetic protein fliP; chromosome CDS2173637 738 + 0.53794
fliQ Flagellar biosynthetic protein fliQRecName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS2174384 270 + 0.511111
fliR Flagellar biosynthetic protein fliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS2174662 786 + 0.469466
fliS Flagellar protein fliSSubName: Full=Flagellar protein fliS; chromosome CDS2154981 411 + 0.479319
focA F1C major fimbrial subunit precursorRecName: Full=Type-1 fimbrial protein, C chain; AltName: Full=Type-1C pilin; Flags: Precursor; chromosome CDS1188213 543 + 0.443831
focC F1C periplasmic chaperoneRecName: Full=Chaperone protein FocC; Flags: Precursor; chromosome CDS1189406 696 + 0.452586
focD F1C fimbrial usherSubName: Full=F1C fimbrial usher; chromosome CDS1190123 2679 + 0.52221
focF F1C minor fimbrial subunit F precursorSubName: Full=F1C minor fimbrial subunit F; chromosome CDS1192814 528 + 0.467803
focG F1C minor fimbrial subunit protein G presursorSubName: Full=F1C minor fimbrial subunit protein G presursor; chromosome CDS1193363 504 + 0.418651
focH F1C Putative fimbrial adhesin precursorSubName: Full=F1C Putative fimbrial adhesin; chromosome CDS1193817 1011 + 0.479723
ftsY Cell division protein ftsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS4041243 1497 - 0.530394
hofB Protein transport protein hofBSubName: Full=Protein transport protein hofB; chromosome CDS120853 1386 - 0.536075
hofC Protein transport protein hofCSubName: Full=Protein transport protein hofC; chromosome CDS119661 1203 - 0.522028
hofD Type 4 prepilin-like proteins leader peptide processing enzymeSubName: Full=Type 4 prepilin-like proteins leader peptide processing enzyme; chromosome CDS3896922 678 + 0.504425
hofF Putative general secretion pathway protein FSubName: Full=Putative general secretion pathway protein F; chromosome CDS3891196 1197 + 0.509607
hofG Putative general secretion pathway protein G precursorSubName: Full=Putative general secretion pathway protein G; chromosome CDS3892402 438 + 0.493151
hofH Putative general secretion pathway protein H precursorSubName: Full=Putative general secretion pathway protein H; chromosome CDS3892847 510 + 0.554902
hofQ Protein transport protein hofQ precursorSubName: Full=Protein transport protein hofQ; chromosome CDS3945518 1239 - 0.538337
htrE Outer membrane usher protein htrE precursorSubName: Full=Outer membrane usher protein htrE; chromosome CDS163376 2589 - 0.447277
lepB Signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS2967202 975 - 0.517949
lspA Lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS27469 495 + 0.523232
marC Multiple antibiotic resistance protein marCRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1794147 666 - 0.503003
nfrB Bacteriophage N4 adsorption protein BSubName: Full=Bacteriophage N4 adsorption protein B; chromosome CDS634562 2163 - 0.526121
papA PapA proteinRecName: Full=F7-2 fimbrial protein; AltName: Full=F7-2 pilin; Flags: Precursor; chromosome CDS3436965 600 - 0.418333
papA_2 c5188 PapA proteinSubName: Full=PapA protein; chromosome CDS4948203 597 - 0.41206
papC PapC proteinSubName: Full=PapC protein; chromosome CDS3433739 2523 - 0.524772
papC_2 c5186 PapC proteinSubName: Full=PapC protein; chromosome CDS4944977 2532 - 0.525671
papD PapD proteinSubName: Full=PapD protein; chromosome CDS3432934 606 - 0.450495
papD_2 c5185 PapD proteinSubName: Full=PapD protein; chromosome CDS4944172 735 - 0.458503
papK PapK proteinRecName: Full=Fimbrial adapter PapK; Flags: Precursor; chromosome CDS3431770 540 - 0.542593
papK_2 c5182 PapK proteinRecName: Full=Fimbrial adapter PapK; Flags: Precursor; chromosome CDS4943008 540 - 0.542593
ppdA Prepilin peptidase dependent protein A precursorSubName: Full=Prepilin peptidase dependent protein A; chromosome CDS3271027 471 - 0.543524
ppdB Prepilin peptidase dependent protein B precursorSubName: Full=Prepilin peptidase dependent protein B; chromosome CDS3270473 588 - 0.52381
ppdD Prepilin peptidase dependent protein D precursorSubName: Full=Prepilin peptidase dependent protein D; chromosome CDS122248 441 - 0.526077
prlA Preprotein translocase secY subunitRecName: Full=Protein translocase subunit SecY; chromosome CDS3874142 1332 - 0.495495
sat Aecreted auto transpoter toxinRecName: Full=Serine protease sat autotransporter; EC=3.4.21.-; Contains: RecName: Full=Serine protease sat; AltName: Full=Secreted autotransporter toxin sat; Contains: RecName: Full=Serine protease sat translocator; Flags: Precursor; chromosome CDS3456362 3900 - 0.415128
secA Preprotein translocase secA subunitRecName: Full=Protein translocase subunit SecA; chromosome CDS112106 2706 + 0.521064
secB Protein-export protein secBRecName: Full=Protein-export protein SecB; chromosome CDS4217846 528 - 0.5
secD Protein-export membrane protein secDRecName: Full=Protein translocase subunit SecD; chromosome CDS501838 1848 + 0.532468
secE c4936 Preprotein translocase secE subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS4709606 384 + 0.549479
secF Protein-export membrane protein secFRecName: Full=Protein translocase subunit SecF; chromosome CDS503651 1017 + 0.521141
secG Protein-export membrane protein secGRecName: Full=Protein-export membrane protein SecG; AltName: Full=P12; AltName: Full=Preprotein translocase band 1 subunit; chromosome CDS3755804 381 - 0.501312
sfaD Putative minor F1C fimbrial subunit precursorSubName: Full=Putative minor F1C fimbrial subunit; chromosome CDS1188841 525 + 0.506667
smf Unknown protein fragment 1SubName: Full=Uncharacterized protein; chromosome CDS3863803 1125 - 0.506667
sohB Possible protease sohBSubName: Full=Possible protease sohB; EC=3.4.21.-; chromosome CDS1572932 1050 + 0.50381
sppA Protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS2006066 1857 + 0.518578
spy Spheroplast protein Y precursorSubName: Full=Spheroplast protein Y; chromosome CDS1978985 486 - 0.510288
tolB TolB protein precursorRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS800407 1296 + 0.530864
tolC Outer membrane protein tolC precursorSubName: Full=Outer membrane protein tolC; chromosome CDS3614867 1521 + 0.514135
tolQ TolQ proteinSubName: Full=TolQ protein; chromosome CDS797823 693 + 0.503608
tolR TolR proteinRecName: Full=Protein TolR; chromosome CDS798519 429 + 0.515152
yadK Protein yadKSubName: Full=Protein yadK; chromosome CDS161550 597 - 0.432161
yadM Hypothetical protein yadM precursorSubName: Full=Uncharacterized protein; chromosome CDS162793 567 - 0.417989
yadN Hypothetical fimbrial-like protein yadN precursorSubName: Full=Hypothetical fimbrial-like protein yadN; chromosome CDS166848 615 - 0.426016
yajC Hypothetical protein yajCRecName: Full=UPF0092 membrane protein YajC; chromosome CDS501448 363 + 0.46832
ybbJ Hypothetical protein ybbJSubName: Full=Uncharacterized protein; chromosome CDS590361 459 - 0.583878
ybeC Sec-independent protein translocase protein tatERecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS699539 204 + 0.5
ycbS Hypothetical outer membrane usher protein ycbS precursorSubName: Full=Hypothetical outer membrane usher protein ycbS; chromosome CDS3995436 2595 - 0.419653
ydeR Hypothetical fimbrial-like protein ydeR precursorSubName: Full=Hypothetical fimbrial-like protein ydeR; chromosome CDS1773472 504 - 0.434524
ydeS Hypothetical fimbrial-like protein ydeS precursorSubName: Full=Hypothetical fimbrial-like protein ydeS; chromosome CDS1773988 531 - 0.436911
ydeU Hypothetical protein ydeUSubName: Full=Uncharacterized protein; chromosome CDS2747815 876 - 0.472603
ydhQ Hypothetical protein ydhQSubName: Full=Uncharacterized protein; chromosome CDS1901009 1257 - 0.512331
yehB Hypothetical outer membrane usher protein yehB precursorSubName: Full=Hypothetical outer membrane usher protein yehB; chromosome CDS2479102 2496 - 0.452724
yehC Hypothetical fimbrial chaperone yehC precursorSubName: Full=Hypothetical fimbrial chaperone yehC; chromosome CDS2481598 675 - 0.386667
yfaL Hypothetical protein yfaL precursorSubName: Full=Uncharacterized protein; chromosome CDS2627282 3765 - 0.50571
yfcP Hypothetical fimbrial-like protein yfcP precursorSubName: Full=Hypothetical fimbrial-like protein yfcP; chromosome CDS2732134 528 - 0.545455
yfcS Hypothetical fimbrial chaperone yfcS precursorSubName: Full=Hypothetical fimbrial chaperone yfcS; chromosome CDS2733654 753 - 0.552457
yfcU Putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS2734426 2655 - 0.544256
yggR Hypothetical protein yggRSubName: Full=Uncharacterized protein; chromosome CDS3390045 1056 - 0.543561
yghD Putative general secretion pathway protein M-type yghDRecName: Full=Putative type II secretion system M-type protein; Short=Putative T2SS M-type protein; AltName: Full=Putative extracytoplasmic function protein; AltName: Full=Putative general secretion pathway M-type protein; chromosome CDS3530466 537 - 0.549348
yheE Probable general secretion pathway protein CSubName: Full=Probable general secretion pathway protein C; chromosome CDS3886957 816 + 0.417892
yheF Probable general secretion pathway protein D precursorSubName: Full=Probable general secretion pathway protein D; chromosome CDS3887744 1965 + 0.499237
yheG Probable general secretion pathway protein ESubName: Full=Probable general secretion pathway protein E; chromosome CDS3889718 1482 + 0.518219
yheH Probable general secretion pathway protein I precursorSubName: Full=Probable general secretion pathway protein I; chromosome CDS3893314 417 + 0.494005
yheI Probable general secretion pathway protein J precursorSubName: Full=Probable general secretion pathway protein J; chromosome CDS3893723 588 + 0.5
yheJ Probable general secretion pathway protein KRecName: Full=Type II secretion system protein K; chromosome CDS3894303 906 + 0.497792
yheK Probable general secretion pathway protein LSubName: Full=Probable general secretion pathway protein L; chromosome CDS3895298 1167 + 0.481577
yhgN Hypothetical protein yhgNSubName: Full=Uncharacterized protein; chromosome CDS4011055 594 + 0.503367
yidC 60 kDa inner-membrane proteinRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS4386813 1647 + 0.538555
yidR Hypothetical protein yidRSubName: Full=Uncharacterized protein; chromosome CDS4369798 1251 - 0.541966
yjaI c4959 Zinc resistance-associated protein precursorRecName: Full=Zinc resistance-associated protein; Flags: Precursor; chromosome CDS4732470 561 - 0.509804
yjcP c5085 Hypothetical outer-membrane lipoprotein yjcP precursorRecName: Full=Multidrug resistance outer membrane protein MdtP; Flags: Precursor; chromosome CDS4858723 1467 - 0.560327
yjjA Hypothetical protein yjjA precursorSubName: Full=Uncharacterized protein; chromosome CDS5188682 498 - 0.491968
yohG Putative channel/filament proteinsRecName: Full=Multidrug resistance outer membrane protein MdtQ; Flags: Precursor; chromosome CDS2519000 1527 - 0.542895
yqeC Hypothetical protein yqeCSubName: Full=Uncharacterized protein; chromosome CDS3310549 771 - 0.490272
yqiG Hypothetical outer membrane usher protein yqiG precursorSubName: Full=Hypothetical outer membrane usher protein yqiG; chromosome CDS3625228 2523 + 0.467697
yqiH Hypothetical fimbrial chaperone yqiH precursorSubName: Full=Hypothetical fimbrial chaperone yqiH; chromosome CDS3627757 750 + 0.476
yrfC Hypothetical protein yrfCSubName: Full=Uncharacterized protein; chromosome CDS3947486 540 - 0.540741