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2024-04-27 09:36:03

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli CFT073, CFT073

Number of genes found: 150

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli CFT073, CFT073
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA c4786 Sec-independent protein translocase protein tatBchromosome CDS4548070 516 + 0.544574
NA c4785 Sec-independent protein translocase protein tatAchromosome CDS4547755 312 + 0.451923
c0319 Putative oligogalacturonide lyasechromosome CDS289986 1173 + 0.387894
c0345 Putative member of ShlA/HecA/FhaA exoprotein familychromosome CDS312645 9651 + 0.555694
c0350 Pic serine protease precursorchromosome CDS326209 4116 - 0.499514
c0360 Hypothetical proteinchromosome CDS336046 1248 + 0.455128
c0363 Putative RTX family exoprotein A genechromosome CDS340972 4833 + 0.489137
c0393 Haemoglobin proteasechromosome CDS371877 4131 - 0.48366
c0426 Hypothetical proteinchromosome CDS410042 2331 - 0.460317
c0478 Putative structural proteinchromosome CDS465478 2988 + 0.459839
c0545 Hypothetical proteinchromosome CDS527471 600 + 0.528333
c1205 Hypothetical proteinchromosome CDS1159313 2727 + 0.56289
c1206 Hypothetical proteinchromosome CDS1161999 1233 + 0.556367
c1207 Hypothetical proteinchromosome CDS1163191 1614 + 0.519827
c1273 Antigen 43 precursorchromosome CDS1225454 3276 + 0.578144
c1448 Putative capsid assembly protein of prophagechromosome CDS1352906 1506 + 0.602922
c1468 Hypothetical proteinchromosome CDS1368995 2064 + 0.483043
c1572 Putative capsid assembly protein of prophagechromosome CDS1429149 1506 + 0.60093
c1615 Putative conserved proteinchromosome CDS1459716 528 + 0.49053
c1619 Putative conserved proteinchromosome CDS1461577 327 + 0.507645
c1765 Partial Putative outer membrane channel proteinchromosome CDS1600755 1374 + 0.539301
c1934 Outer membrane usher protein fimD precursorchromosome CDS1774532 2652 - 0.443439
c1935 Chaperone protein fimC precursorchromosome CDS1777225 711 - 0.452883
c1936 Type-1 fimbrial protein, A chain precursorchromosome CDS1778297 612 - 0.444444
c2394 PilV-like proteinchromosome CDS2197781 1464 - 0.441257
c2895 yapH homologchromosome CDS2748603 7164 - 0.489671
c3170 Putative capsid protein of prophagechromosome CDS3040953 1434 - 0.609484
c3655 Antigen 43 precursorchromosome CDS3491808 3129 + 0.582934
c3702 Hypothetical proteinchromosome CDS3532178 414 - 0.5
c4208 Putative fimbrial chaperone precursorchromosome CDS3993608 798 - 0.388471
c4209 Putative minor fimbrial subunit precursorchromosome CDS3994350 558 - 0.356631
c4210 Putative minor fimbrial subunit precursorchromosome CDS3994873 453 - 0.401766
c4213 Chaperone protein fimC precursorchromosome CDS3998067 780 - 0.382051
c4214 Putative major fimbrial subunit precursorchromosome CDS3998920 705 - 0.476596
c4222 Putative DNA processing proteinchromosome CDS4011694 1296 - 0.506173
c4424 Putative adhesinchromosome CDS4205984 5337 + 0.5267
c4518 Conserved hypothetical proteinchromosome CDS4303576 438 - 0.502283
ccmD Heme exporter protein Dchromosome CDS2582885 210 - 0.566667
clpP ATP-dependent Clp protease proteolytic subunitchromosome CDS530604 624 + 0.501603
cpxP c4865 Conserved hypothetical proteinchromosome CDS4625475 504 + 0.501984
cusC Probable outer membrane lipoprotein cusC precursorchromosome CDS639221 1383 + 0.516992
eaeH Putative adhesinchromosome CDS395711 4251 + 0.519878
ecpD Chaperone protein ecpD precursorchromosome CDS165999 741 - 0.442645
exbB Biopolymer transport exbB proteinchromosome CDS3572894 735 - 0.52381
exbD Biopolymer transport exbD proteinchromosome CDS3572462 426 - 0.483568
ffh Signal recognition particle proteinchromosome CDS3009020 1362 - 0.542584
fhiA FhiA proteinchromosome CDS356346 1740 - 0.571839
fimA c5393 Type-1 fimbrial protein, A chain precursorchromosome CDS5137789 606 + 0.493399
fimC c5395 Chaperone protein fimC precursorchromosome CDS5139035 726 + 0.446281
fimD c5396 Outer membrane usher protein fimD precursorchromosome CDS5139826 2637 + 0.482746
fimF c5397 FimF protein precursorchromosome CDS5142469 534 + 0.490637
fimG c5399 FimG protein precursorchromosome CDS5143015 504 + 0.521825
fimI c5394 Fimbrin-like protein fimI precursorchromosome CDS5138459 540 + 0.496296
flgN Flagella synthesis protein flgNchromosome CDS1272917 417 - 0.482014
flhA Flagellar biosynthesis protein flhAchromosome CDS2113793 2154 - 0.550139
flhB Flagellar biosynthetic protein flhBchromosome CDS2115864 1149 - 0.550914
fliE Flagellar hook-basal body complex protein fliEchromosome CDS2164468 345 - 0.536232
fliF Flagellar M-ring proteinchromosome CDS2164997 1659 + 0.549729
fliH Flagellar assembly protein fliHchromosome CDS2167615 708 + 0.573446
fliI Flagellum-specific ATP synthasechromosome CDS2168322 1374 + 0.582969
fliJ Flagellar fliJ proteinchromosome CDS2169714 444 + 0.522523
fliN Flagellar motor switch protein fliNchromosome CDS2172856 414 + 0.557971
fliP Flagellar biosynthetic protein fliP precursorchromosome CDS2173637 738 + 0.53794
fliQ Flagellar biosynthetic protein fliQchromosome CDS2174384 270 + 0.511111
fliR Flagellar biosynthetic protein fliRchromosome CDS2174662 786 + 0.469466
fliS Flagellar protein fliSchromosome CDS2154981 411 + 0.479319
focA F1C major fimbrial subunit precursorchromosome CDS1188213 543 + 0.443831
focC F1C periplasmic chaperonechromosome CDS1189406 696 + 0.452586
focD F1C fimbrial usherchromosome CDS1190123 2679 + 0.52221
focF F1C minor fimbrial subunit F precursorchromosome CDS1192814 528 + 0.467803
focG F1C minor fimbrial subunit protein G presursorchromosome CDS1193363 504 + 0.418651
focH F1C Putative fimbrial adhesin precursorchromosome CDS1193817 1011 + 0.479723
ftsY Cell division protein ftsYchromosome CDS4041243 1497 - 0.530394
hofB Protein transport protein hofBchromosome CDS120853 1386 - 0.536075
hofC Protein transport protein hofCchromosome CDS119661 1203 - 0.522028
hofD Type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS3896922 678 + 0.504425
hofF Putative general secretion pathway protein Fchromosome CDS3891196 1197 + 0.509607
hofG Putative general secretion pathway protein G precursorchromosome CDS3892402 438 + 0.493151
hofH Putative general secretion pathway protein H precursorchromosome CDS3892847 510 + 0.554902
hofQ Protein transport protein hofQ precursorchromosome CDS3945518 1239 - 0.538337
htrE Outer membrane usher protein htrE precursorchromosome CDS163376 2589 - 0.447277
lepB Signal peptidase Ichromosome CDS2967202 975 - 0.517949
lspA Lipoprotein signal peptidasechromosome CDS27469 495 + 0.523232
marC Multiple antibiotic resistance protein marCchromosome CDS1794147 666 - 0.503003
nfrB Bacteriophage N4 adsorption protein Bchromosome CDS634562 2163 - 0.526121
papA PapA proteinchromosome CDS3436965 600 - 0.418333
papA_2 c5188 PapA proteinchromosome CDS4948203 597 - 0.41206
papC PapC proteinchromosome CDS3433739 2523 - 0.524772
papC_2 c5186 PapC proteinchromosome CDS4944977 2532 - 0.525671
papD PapD proteinchromosome CDS3432934 606 - 0.450495
papD_2 c5185 PapD proteinchromosome CDS4944172 735 - 0.458503
papK PapK proteinchromosome CDS3431770 540 - 0.542593
papK_2 c5182 PapK proteinchromosome CDS4943008 540 - 0.542593
ppdA Prepilin peptidase dependent protein A precursorchromosome CDS3271027 471 - 0.543524
ppdB Prepilin peptidase dependent protein B precursorchromosome CDS3270473 588 - 0.52381
ppdD Prepilin peptidase dependent protein D precursorchromosome CDS122248 441 - 0.526077
prlA Preprotein translocase secY subunitchromosome CDS3874142 1332 - 0.495495
sat Aecreted auto transpoter toxinchromosome CDS3456362 3900 - 0.415128
secA Preprotein translocase secA subunitchromosome CDS112106 2706 + 0.521064
secB Protein-export protein secBchromosome CDS4217846 528 - 0.5
secD Protein-export membrane protein secDchromosome CDS501838 1848 + 0.532468
secE c4936 Preprotein translocase secE subunitchromosome CDS4709606 384 + 0.549479
secF Protein-export membrane protein secFchromosome CDS503651 1017 + 0.521141
secG Protein-export membrane protein secGchromosome CDS3755804 381 - 0.501312
sfaD Putative minor F1C fimbrial subunit precursorchromosome CDS1188841 525 + 0.506667
smf Unknown protein fragment 1chromosome CDS3863803 1125 - 0.506667
sohB Possible protease sohBchromosome CDS1572932 1050 + 0.50381
sppA Protease IVchromosome CDS2006066 1857 + 0.518578
spy Spheroplast protein Y precursorchromosome CDS1978985 486 - 0.510288
tolB TolB protein precursorchromosome CDS800407 1296 + 0.530864
tolC Outer membrane protein tolC precursorchromosome CDS3614867 1521 + 0.514135
tolQ TolQ proteinchromosome CDS797823 693 + 0.503608
tolR TolR proteinchromosome CDS798519 429 + 0.515152
yadK Protein yadKchromosome CDS161550 597 - 0.432161
yadM Hypothetical protein yadM precursorchromosome CDS162793 567 - 0.417989
yadN Hypothetical fimbrial-like protein yadN precursorchromosome CDS166848 615 - 0.426016
yajC Hypothetical protein yajCchromosome CDS501448 363 + 0.46832
ybbJ Hypothetical protein ybbJchromosome CDS590361 459 - 0.583878
ybeC Sec-independent protein translocase protein tatEchromosome CDS699539 204 + 0.5
ycbS Hypothetical outer membrane usher protein ycbS precursorchromosome CDS3995436 2595 - 0.419653
ydeR Hypothetical fimbrial-like protein ydeR precursorchromosome CDS1773472 504 - 0.434524
ydeS Hypothetical fimbrial-like protein ydeS precursorchromosome CDS1773988 531 - 0.436911
ydeU Hypothetical protein ydeUchromosome CDS2747815 876 - 0.472603
ydhQ Hypothetical protein ydhQchromosome CDS1901009 1257 - 0.512331
yehB Hypothetical outer membrane usher protein yehB precursorchromosome CDS2479102 2496 - 0.452724
yehC Hypothetical fimbrial chaperone yehC precursorchromosome CDS2481598 675 - 0.386667
yfaL Hypothetical protein yfaL precursorchromosome CDS2627282 3765 - 0.50571
yfcP Hypothetical fimbrial-like protein yfcP precursorchromosome CDS2732134 528 - 0.545455
yfcS Hypothetical fimbrial chaperone yfcS precursorchromosome CDS2733654 753 - 0.552457
yfcU Putative outer membrane proteinchromosome CDS2734426 2655 - 0.544256
yggR Hypothetical protein yggRchromosome CDS3390045 1056 - 0.543561
yghD Putative general secretion pathway protein M-type yghDchromosome CDS3530466 537 - 0.549348
yheE Probable general secretion pathway protein Cchromosome CDS3886957 816 + 0.417892
yheF Probable general secretion pathway protein D precursorchromosome CDS3887744 1965 + 0.499237
yheG Probable general secretion pathway protein Echromosome CDS3889718 1482 + 0.518219
yheH Probable general secretion pathway protein I precursorchromosome CDS3893314 417 + 0.494005
yheI Probable general secretion pathway protein J precursorchromosome CDS3893723 588 + 0.5
yheJ Probable general secretion pathway protein Kchromosome CDS3894303 906 + 0.497792
yheK Probable general secretion pathway protein Lchromosome CDS3895298 1167 + 0.481577
yhgN Hypothetical protein yhgNchromosome CDS4011055 594 + 0.503367
yidC 60 kDa inner-membrane proteinchromosome CDS4386813 1647 + 0.538555
yidR Hypothetical protein yidRchromosome CDS4369798 1251 - 0.541966
yjaI c4959 Zinc resistance-associated protein precursorchromosome CDS4732470 561 - 0.509804
yjcP c5085 Hypothetical outer-membrane lipoprotein yjcP precursorchromosome CDS4858723 1467 - 0.560327
yjjA Hypothetical protein yjjA precursorchromosome CDS5188682 498 - 0.491968
yohG Putative channel/filament proteinschromosome CDS2519000 1527 - 0.542895
yqeC Hypothetical protein yqeCchromosome CDS3310549 771 - 0.490272
yqiG Hypothetical outer membrane usher protein yqiG precursorchromosome CDS3625228 2523 + 0.467697
yqiH Hypothetical fimbrial chaperone yqiH precursorchromosome CDS3627757 750 + 0.476
yrfC Hypothetical protein yrfCchromosome CDS3947486 540 - 0.540741