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2024-05-18 06:46:08

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella flexneri 2a str. 2457T, 2457T

Number of genes found: 86

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Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA S3840 hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS3737958 312 - 0.448718
NA S1242 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1203948 2322 + 0.472438
NA S0741 head-tail preconnector gp5SubName: Full=Head-tail preconnector gp5; chromosome CDS726004 1506 + 0.588977
NA S3195 outer membrane fluffing proteinSubName: Full=Outer membrane fluffing protein; chromosome CDS3079305 2121 + 0.585101
NA S3965 putative secreted autotransporter toxinSubName: Full=Putative secreted autotransporter toxin; chromosome CDS3860121 507 + 0.441815
NA S3755 hypothetical proteinRecName: Full=Periplasmic protein CpxP; Flags: Precursor; chromosome CDS3651915 369 - 0.479675
NA S3838 hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS3737439 516 - 0.554264
NA S4254 probable fimbrial protein remnantSubName: Full=Probable fimbrial protein remnant; chromosome CDS4166615 1080 + 0.434259
NA S4250 possible chaperoneSubName: Full=Possible chaperone; chromosome CDS4166011 561 + 0.420677
NA S1824 possible enzymeSubName: Full=Possible enzyme; chromosome CDS1764150 1257 - 0.518695
NA S1008 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS993920 543 + 0.471455
NA S3194 outer membrane fluffing proteinSubName: Full=Outer membrane fluffing protein; chromosome CDS3078306 894 + 0.56264
NA S3211 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3093171 240 - 0.429167
NA S1009 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS994422 564 + 0.473404
ccmD S2412 heme exporter protein CRecName: Full=Heme exporter protein D; AltName: Full=Cytochrome c-type biogenesis protein CcmD; chromosome CDS2296835 210 - 0.566667
clpP S0388 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS391578 624 + 0.509615
exbB S3254 enterochelin transporter (uptake)SubName: Full=Enterochelin transporter (Uptake); chromosome CDS3135354 735 - 0.526531
exbD S3253 enterochelin transporter (uptake)RecName: Full=Biopolymer transport protein ExbD; chromosome CDS3134922 426 - 0.502347
ffh S2847 GTP-binding export factor binds to signal sequence, GTP and RNARecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2739607 1362 - 0.54185
fhiA S0299 flagellar biosynthetic protein FlhASubName: Full=Flagellar biosynthetic protein FlhA; chromosome CDS298315 1740 - 0.583908
fimA S4465 major type 1 subunit fimbrin (pilin)SubName: Full=Major type 1 subunit fimbrin (Pilin); chromosome CDS4372652 549 - 0.510018
fimC S4463 periplasmic chaperoneSubName: Full=Periplasmic chaperone; chromosome CDS4371286 726 - 0.442149
fimF S4458 minor fimbrial subunit, precursor polypeptideSubName: Full=Minor fimbrial subunit, polypeptide; chromosome CDS4367267 531 - 0.489642
fimG S4457 minor fimbrial subunit, precursor polypeptideSubName: Full=Minor fimbrial subunit, polypeptide; chromosome CDS4366751 504 - 0.529762
fimI S4464 fimbrial proteinSubName: Full=Fimbrial protein; chromosome CDS4372048 639 - 0.499218
flgM S1155 flagellar protein FlgMRecName: Full=Negative regulator of flagellin synthesis; AltName: Full=Anti-sigma-28 factor; chromosome CDS1120488 294 - 0.530612
flgN S1154 flagella synthesis protein FlgNSubName: Full=Flagella synthesis protein FlgN; chromosome CDS1120067 417 - 0.479616
flhB S2014 putative part of export apparatus for flagellar proteinsSubName: Full=Putative part of export apparatus for flagellar proteins; chromosome CDS1936449 1194 - 0.551089
fliE S2076 flagellar hook-basal body 11K protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS1989322 315 - 0.549206
fliH S2079 flagellar assembly protein FliHSubName: Full=Flagellar assembly protein FliH; chromosome CDS1992490 687 + 0.572052
fliI S2080 flagellum-specific ATP synthaseSubName: Full=Flagellum-specific ATP synthase; chromosome CDS1993176 1374 + 0.580058
fliN S2085 flagellar motor switch protein FliNSubName: Full=Flagellar motor switch protein FliN; chromosome CDS1997611 414 + 0.557971
fliQ S2088 flagellar biosynthetic protein FliQRecName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS1999167 270 + 0.511111
fliR S2089 flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS1999445 786 + 0.47201
fliS S2064 flagellar protein FliSSubName: Full=Flagellar protein FliS; chromosome CDS1978105 411 + 0.481752
ftsY S4281 cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS4199238 1497 + 0.53173
hofC S0105 putative integral membrane proteinSubName: Full=Putative integral membrane protein; chromosome CDS112511 1203 - 0.525353
hofQ S4353 putative transport porteinSubName: Full=Putative transport portein; SubName: Full=Putative transport protein; chromosome CDS4282787 1239 + 0.543987
lepB S2803 leader peptidase (signal peptidase I)RecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS2694994 975 - 0.52
lpfA S3961 putative major fimbrial subunitSubName: Full=Putative major fimbrial subunit; chromosome CDS3855926 573 + 0.474695
lpfC S4048 putative long polar fimbriaeSubName: Full=Putative long polar fimbriae; chromosome CDS3940913 2523 - 0.470075
lspA S0026 prolipoprotein signal peptidase (SPase II)RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS24161 495 + 0.537374
pic S3178 serine protease precurserRecName: Full=Serine protease pic autotransporter; EC=3.4.21.-; AltName: Full=ShMu; Contains: RecName: Full=Serine protease pic; Contains: RecName: Full=Serine protease pic translocator; Flags: Precursor; chromosome CDS3059914 3213 - 0.511983
ppdB S3033 prepilin peptidase dependent protein BSubName: Full=Prepilin peptidase dependent protein B; chromosome CDS2918196 564 - 0.519504
ppdD S0107 prelipin peptidase dependent proteinSubName: Full=Prelipin peptidase dependent protein; chromosome CDS114860 441 - 0.530612
prlA S4430 putative ATPase subunit of translocaseRecName: Full=Protein translocase subunit SecY; chromosome CDS4344224 1332 + 0.497748
secA S0097 preprotein translocase; secretion proteinRecName: Full=Protein translocase subunit SecA; chromosome CDS106384 2706 + 0.522173
secB S4120 molecular chaperone in protein exportRecName: Full=Protein-export protein SecB; chromosome CDS4018493 468 + 0.510684
secD S0353 membrane proteinRecName: Full=Protein translocase subunit SecD; chromosome CDS356280 1848 + 0.531926
secE S3681 preprotein translocaseRecName: Full=Protein translocase subunit SecE; chromosome CDS3575725 384 - 0.552083
secF S0354 membrane proteinRecName: Full=Protein-export membrane protein SecF; chromosome CDS358138 972 + 0.515432
secG S3433 protein translocase membrane componentSubName: Full=Protein translocase membrane component; chromosome CDS3305473 333 - 0.501502
sfmA S0469 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS476502 576 + 0.4375
sfmC S0470 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS477297 693 + 0.431457
sigA S4824 serine proteaseSubName: Full=Serine protease; chromosome CDS3052614 3858 + 0.417574
smf S3542 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3405401 1125 - 0.510222
sohB S1359 putative proteaseRecName: Full=Probable protease SohB; EC=3.4.21.-; chromosome CDS1323483 1050 + 0.505714
sppA S1572 protease IV, a signal peptide peptidaseRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1530434 1857 - 0.519655
spy S1600 periplasmic proteinSubName: Full=Periplasmic protein; chromosome CDS1558202 486 + 0.50823
tolB S0570 periplasmic proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS574322 1293 - 0.531322
tolC S3280 outer membrane channel TolCSubName: Full=Outer membrane channel TolC; chromosome CDS3159914 1482 + 0.51417
tolQ S0573 inner membrane protein TolQRecName: Full=Protein TolQ; chromosome CDS577485 693 - 0.500722
tolR S0572 putative inner membrane proteinRecName: Full=Protein TolR; chromosome CDS577053 429 - 0.517483
trbL S2716 putative mating pair formation proteinSubName: Full=Putative mating pair formation protein; chromosome CDS2607237 807 - 0.530359
yajC S0352 hypothetical proteinRecName: Full=UPF0092 membrane protein YajC; chromosome CDS355920 333 + 0.495495
ybbJ S0440 hypothetical proteinRecName: Full=Inner membrane protein YbbJ; chromosome CDS450522 456 - 0.576754
ybeC S0676 hypothetical proteinRecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS687603 204 - 0.5
ybgD S0591 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS600357 567 + 0.47619
ybgP S0593 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS603448 732 + 0.494536
ybgQ S0592 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS600974 2460 + 0.493902
ycbF S1010 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS994951 738 + 0.509485
ycbS S1006 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS990248 2601 + 0.478278
ydeB S1692 hypothetical proteinRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1636473 666 + 0.510511
yehB S2296 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS2175483 2481 - 0.455462
yehD S2298 putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS2178734 525 - 0.405714
yejO S2406 putative ATP-binding component of a transport systemSubName: Full=Putative ATP-binding component of a transport system; chromosome CDS2289047 2511 - 0.486659
yggR S3146 putative transport proteinSubName: Full=Putative transport protein; chromosome CDS3024584 1026 - 0.540936
yhgN S4306 hypothetical proteinRecName: Full=UPF0056 inner membrane protein YhgN; chromosome CDS4224353 594 - 0.501683
yidC S4012 60 KD inner-membrane proteinRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS3906912 1647 + 0.534912
yigU S3837 hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS3736660 777 - 0.513514
yjaI S3661 hypothetical proteinRecName: Full=Zinc resistance-associated protein; Flags: Precursor; chromosome CDS3552409 567 + 0.516755
yjcP S3607 putative enzymeRecName: Full=Multidrug resistance outer membrane protein MdtP; Flags: Precursor; chromosome CDS3481775 1467 - 0.556919
ylcB S0481 putative resistance proteinSubName: Full=Putative resistance protein; chromosome CDS489307 1383 + 0.518438
yraI S3397 putative chaperoneSubName: Full=Putative chaperone; chromosome CDS3270079 696 + 0.448276
yraK S3403 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome CDS3274664 1092 + 0.478938
yrfC S4350 hypothetical proteinRecName: Full=Putative DNA utilization protein HofN; chromosome CDS4281516 540 + 0.553704