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2024-05-04 05:30:31

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Shigella flexneri 2a str. 2457T, 2457T

Number of genes found: 86

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 2457T, 2457T
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA S3838 hypothetical proteinchromosome CDS3737439 516 - 0.554264
NA S1009 putative fimbrial-like proteinchromosome CDS994422 564 + 0.473404
NA S0741 head-tail preconnector gp5chromosome CDS726004 1506 + 0.588977
NA S3211 hypothetical proteinchromosome CDS3093171 240 - 0.429167
NA S1008 putative fimbrial-like proteinchromosome CDS993920 543 + 0.471455
NA S4250 possible chaperonechromosome CDS4166011 561 + 0.420677
NA S3194 outer membrane fluffing proteinchromosome CDS3078306 894 + 0.56264
NA S1242 hypothetical proteinchromosome CDS1203948 2322 + 0.472438
NA S3755 hypothetical proteinchromosome CDS3651915 369 - 0.479675
NA S4254 probable fimbrial protein remnantchromosome CDS4166615 1080 + 0.434259
NA S1824 possible enzymechromosome CDS1764150 1257 - 0.518695
NA S3195 outer membrane fluffing proteinchromosome CDS3079305 2121 + 0.585101
NA S3965 putative secreted autotransporter toxinchromosome CDS3860121 507 + 0.441815
NA S3840 hypothetical proteinchromosome CDS3737958 312 - 0.448718
ccmD S2412 heme exporter protein Cchromosome CDS2296835 210 - 0.566667
clpP S0388 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5chromosome CDS391578 624 + 0.509615
exbB S3254 enterochelin transporter (uptake)chromosome CDS3135354 735 - 0.526531
exbD S3253 enterochelin transporter (uptake)chromosome CDS3134922 426 - 0.502347
ffh S2847 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2739607 1362 - 0.54185
fhiA S0299 flagellar biosynthetic protein FlhAchromosome CDS298315 1740 - 0.583908
fimA S4465 major type 1 subunit fimbrin (pilin)chromosome CDS4372652 549 - 0.510018
fimC S4463 periplasmic chaperonechromosome CDS4371286 726 - 0.442149
fimF S4458 minor fimbrial subunit, precursor polypeptidechromosome CDS4367267 531 - 0.489642
fimG S4457 minor fimbrial subunit, precursor polypeptidechromosome CDS4366751 504 - 0.529762
fimI S4464 fimbrial proteinchromosome CDS4372048 639 - 0.499218
flgM S1155 flagellar protein FlgMchromosome CDS1120488 294 - 0.530612
flgN S1154 flagella synthesis protein FlgNchromosome CDS1120067 417 - 0.479616
flhB S2014 putative part of export apparatus for flagellar proteinschromosome CDS1936449 1194 - 0.551089
fliE S2076 flagellar hook-basal body 11K protein FliEchromosome CDS1989322 315 - 0.549206
fliH S2079 flagellar assembly protein FliHchromosome CDS1992490 687 + 0.572052
fliI S2080 flagellum-specific ATP synthasechromosome CDS1993176 1374 + 0.580058
fliN S2085 flagellar motor switch protein FliNchromosome CDS1997611 414 + 0.557971
fliQ S2088 flagellar biosynthetic protein FliQchromosome CDS1999167 270 + 0.511111
fliR S2089 flagellar biosynthetic protein FliRchromosome CDS1999445 786 + 0.47201
fliS S2064 flagellar protein FliSchromosome CDS1978105 411 + 0.481752
ftsY S4281 cell division membrane proteinchromosome CDS4199238 1497 + 0.53173
hofC S0105 putative integral membrane proteinchromosome CDS112511 1203 - 0.525353
hofQ S4353 putative transport porteinchromosome CDS4282787 1239 + 0.543987
lepB S2803 leader peptidase (signal peptidase I)chromosome CDS2694994 975 - 0.52
lpfA S3961 putative major fimbrial subunitchromosome CDS3855926 573 + 0.474695
lpfC S4048 putative long polar fimbriaechromosome CDS3940913 2523 - 0.470075
lspA S0026 prolipoprotein signal peptidase (SPase II)chromosome CDS24161 495 + 0.537374
pic S3178 serine protease precurserchromosome CDS3059914 3213 - 0.511983
ppdB S3033 prepilin peptidase dependent protein Bchromosome CDS2918196 564 - 0.519504
ppdD S0107 prelipin peptidase dependent proteinchromosome CDS114860 441 - 0.530612
prlA S4430 putative ATPase subunit of translocasechromosome CDS4344224 1332 + 0.497748
secA S0097 preprotein translocase; secretion proteinchromosome CDS106384 2706 + 0.522173
secB S4120 molecular chaperone in protein exportchromosome CDS4018493 468 + 0.510684
secD S0353 membrane proteinchromosome CDS356280 1848 + 0.531926
secE S3681 preprotein translocasechromosome CDS3575725 384 - 0.552083
secF S0354 membrane proteinchromosome CDS358138 972 + 0.515432
secG S3433 protein translocase membrane componentchromosome CDS3305473 333 - 0.501502
sfmA S0469 putative fimbrial-like proteinchromosome CDS476502 576 + 0.4375
sfmC S0470 putative chaperonechromosome CDS477297 693 + 0.431457
sigA S4824 serine proteasechromosome CDS3052614 3858 + 0.417574
smf S3542 hypothetical proteinchromosome CDS3405401 1125 - 0.510222
sohB S1359 putative proteasechromosome CDS1323483 1050 + 0.505714
sppA S1572 protease IV, a signal peptide peptidasechromosome CDS1530434 1857 - 0.519655
spy S1600 periplasmic proteinchromosome CDS1558202 486 + 0.50823
tolB S0570 periplasmic proteinchromosome CDS574322 1293 - 0.531322
tolC S3280 outer membrane channel TolCchromosome CDS3159914 1482 + 0.51417
tolQ S0573 inner membrane protein TolQchromosome CDS577485 693 - 0.500722
tolR S0572 putative inner membrane proteinchromosome CDS577053 429 - 0.517483
trbL S2716 putative mating pair formation proteinchromosome CDS2607237 807 - 0.530359
yajC S0352 hypothetical proteinchromosome CDS355920 333 + 0.495495
ybbJ S0440 hypothetical proteinchromosome CDS450522 456 - 0.576754
ybeC S0676 hypothetical proteinchromosome CDS687603 204 - 0.5
ybgD S0591 putative fimbrial-like proteinchromosome CDS600357 567 + 0.47619
ybgP S0593 putative chaperonechromosome CDS603448 732 + 0.494536
ybgQ S0592 putative outer membrane proteinchromosome CDS600974 2460 + 0.493902
ycbF S1010 putative chaperonechromosome CDS994951 738 + 0.509485
ycbS S1006 putative outer membrane proteinchromosome CDS990248 2601 + 0.478278
ydeB S1692 hypothetical proteinchromosome CDS1636473 666 + 0.510511
yehB S2296 putative outer membrane proteinchromosome CDS2175483 2481 - 0.455462
yehD S2298 putative fimbrial-like proteinchromosome CDS2178734 525 - 0.405714
yejO S2406 putative ATP-binding component of a transport systemchromosome CDS2289047 2511 - 0.486659
yggR S3146 putative transport proteinchromosome CDS3024584 1026 - 0.540936
yhgN S4306 hypothetical proteinchromosome CDS4224353 594 - 0.501683
yidC S4012 60 KD inner-membrane proteinchromosome CDS3906912 1647 + 0.534912
yigU S3837 hypothetical proteinchromosome CDS3736660 777 - 0.513514
yjaI S3661 hypothetical proteinchromosome CDS3552409 567 + 0.516755
yjcP S3607 putative enzymechromosome CDS3481775 1467 - 0.556919
ylcB S0481 putative resistance proteinchromosome CDS489307 1383 + 0.518438
yraI S3397 putative chaperonechromosome CDS3270079 696 + 0.448276
yraK S3403 putative fimbrial proteinchromosome CDS3274664 1092 + 0.478938
yrfC S4350 hypothetical proteinchromosome CDS4281516 540 + 0.553704