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2024-05-07 00:57:24

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Yersinia pestis KIM, KIM

Number of genes found: 171

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
caf1A F1 capsule anchoring proteinpMT1 CDS67669 2502 - 0.396083
caf1M Caf1MpMT1 CDS70195 777 - 0.405405
ccmD heme exporter protein Dchromosome CDS1737124 303 + 0.518152
clpP ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5chromosome CDS1156547 624 + 0.461538
cyaE putative membrane proteinchromosome CDS3940611 1527 + 0.521938
ecpD probable pilin chaperonechromosome CDS2064363 780 + 0.441026
ecpD probable pilin chaperonechromosome CDS1706449 780 + 0.411538
exbB TonB complex proteinchromosome CDS3876796 1062 - 0.520716
exbD TonB-complex proteinchromosome CDS3876361 432 - 0.483796
ffh GTP-binding export factorchromosome CDS1002978 1362 + 0.483847
fimD outer membrane usher protein FIMD precursorchromosome CDS389158 2628 - 0.471081
flgM anti-FliA factorchromosome CDS2773415 303 + 0.475248
flgN flagellar biosynthesis proteinchromosome CDS2773733 444 + 0.488739
flhA flagellar biosynthesis proteinchromosome CDS2779066 2079 - 0.518037
flhB putative flagellar biosynthetic proteinchromosome CDS3853214 1134 + 0.446208
flhB flagellar biosynthesis proteinchromosome CDS2781144 1161 - 0.525409
fliE basal-body componentchromosome CDS2739174 318 - 0.493711
fliF basal-body MS (membrane and supramembrane)-ring and collar proteinchromosome CDS2739838 1713 + 0.532983
fliF putative flagellar M ring proteinchromosome CDS3846490 1641 - 0.502133
fliH flagellar assembly proteinchromosome CDS2742511 738 + 0.550135
fliI flagellum-specific ATP synthasechromosome CDS3843421 1341 - 0.580164
fliI flagellum-specific ATP synthasechromosome CDS594314 1338 + 0.575486
fliI flagellum-specific ATP synthasechromosome CDS2743187 1479 + 0.54902
fliJ flagellar fliJ proteinchromosome CDS2744765 447 + 0.478747
fliN flagellar motor switch proteinchromosome CDS2748301 417 + 0.494005
fliP flagellar biosynthesis proteinchromosome CDS2749250 825 + 0.513939
fliP flagellar biosynthesis proteinchromosome CDS3851390 771 + 0.514916
fliQ flagellar biosynthesis proteinchromosome CDS2750180 270 + 0.522222
fliR putative flagellar biosynthetic proteinchromosome CDS3852435 780 + 0.475641
fliR flagellar biosynthesis proteinchromosome CDS2750452 783 + 0.496807
fliS repressor of class 3a and 3b operons (RflA activity)chromosome CDS2731874 399 + 0.466165
ftsY cell division membrane proteinchromosome CDS464212 1662 + 0.480144
hasF outer membrane channel proteinchromosome CDS3898569 1404 + 0.47151
hofB putative integral membrane proteinchromosome CDS847025 1557 - 0.460501
hofC putative integral membrane proteinchromosome CDS845829 1200 - 0.455
hofF putative general protein secretion proteinchromosome CDS3521012 1047 - 0.344795
hofG putative general protein secretion proteinchromosome CDS3520555 438 - 0.394977
hofQ putative transport porteinchromosome CDS4387085 1125 + 0.481778
hylA hemolysin precursorchromosome CDS29211 4965 - 0.444914
lcrD low calcium response locus protein DpCD1 CDS22429 2115 + 0.463357
lepB leader peptidase (signal peptidase I)chromosome CDS1440151 999 + 0.49049
lspA prolipoprotein signal peptidase (SPase II)chromosome CDS4110543 510 - 0.454902
ogl putative oligogalacturonide lyasechromosome CDS2071544 1167 + 0.459297
papC putative outer membrane usher proteinchromosome CDS3862332 2481 - 0.503023
ppdD prelipin peptidase dependent proteinchromosome CDS848556 465 - 0.447312
prlA putative ATPase subunit of translocasechromosome CDS4451951 1332 + 0.459459
psaB pH 6 Antigen chaperone proteinchromosome CDS3183531 822 - 0.377129
psaC outer membrane usher proteinchromosome CDS3180976 2514 - 0.492045
secA preprotein translocase; secretion proteinchromosome CDS4008449 2715 - 0.48582
secB protein export; molecular chaperonechromosome CDS83162 477 - 0.484277
secD protein secretion, membrane proteinchromosome CDS1123631 1848 + 0.487554
secE preprotein translocasechromosome CDS536162 399 + 0.486216
secF protein secretion, membrane proteinchromosome CDS1125423 1035 + 0.476328
secG protein export-membrane proteinchromosome CDS769089 336 + 0.482143
smf1 hypothetical proteinchromosome CDS4462694 1122 + 0.486631
smfA fimbrial A protein precursorchromosome CDS1761515 531 + 0.463277
sohB putative proteasechromosome CDS2265449 1047 + 0.483286
sppA protease IV, a signal peptide peptidasechromosome CDS2387165 1851 + 0.480281
tadA putative secretion NTP hydrolasechromosome CDS3869915 1287 + 0.425796
tolB periplasmic proteinchromosome CDS3363345 1293 - 0.4942
tolQ inner membrane proteinchromosome CDS3366476 687 - 0.487627
tolR putative inner membrane proteinchromosome CDS3366035 429 - 0.468531
y0066 putative solute-binding periplasmic protein of ABC transpoterchromosome CDS76410 489 - 0.466258
y0348 putative pilus chaperone, PapD familychromosome CDS386990 819 - 0.482295
y0351 chaperonechromosome CDS391813 756 - 0.42328
y0352 fimbrial protein (precursor)chromosome CDS392608 531 - 0.436911
y0407 hypothetical proteinchromosome CDS456209 528 - 0.477273
y0452 hypothetical proteinchromosome CDS504725 267 + 0.438202
y0453 hypothetical proteinchromosome CDS504995 663 + 0.505279
y0454 hypothetical proteinchromosome CDS505660 777 + 0.449163
y0514 putative secretinchromosome CDS585508 1572 + 0.43257
y0525 putative type III secretion system componentchromosome CDS592273 2055 + 0.519221
y0529 putative type III secretion system componentchromosome CDS596406 963 + 0.54621
y0530 putative type III secretion system componentchromosome CDS597435 711 + 0.451477
y0531 putative type III secretion system componentchromosome CDS598154 282 + 0.482269
y0532 putative type III secretion system componentchromosome CDS598437 795 + 0.515723
y0533 putative type III secretion system componentchromosome CDS599218 1071 + 0.489262
y0562 hypotheticalchromosome CDS628795 2379 + 0.461959
y0563 hypotheticalchromosome CDS631245 744 + 0.435484
y0567 hypotheticalchromosome CDS638175 3804 - 0.532334
y0704 putative outer membrane protein, efflux pumpchromosome CDS790524 1407 + 0.510306
y0941 putative membrane protein, C-terminal part of adhesin system componentchromosome CDS1056129 1791 + 0.455053
y0942 putative membrane protein, N-terminal part of adhesin system componentchromosome CDS1057960 1161 + 0.507321
y0943 putative membrane proteinchromosome CDS1059114 4581 + 0.445536
y0992 hypothetical proteinchromosome CDS1123202 402 + 0.427861
y1095 hypothetical proteinchromosome CDS1235010 450 - 0.502222
y1170 hypothetical proteinchromosome CDS1314768 258 + 0.46124
y1344 hypotheticalchromosome CDS1488476 300 - 0.52
y1351 putative fimbrial biogenesis proteinchromosome CDS1502195 750 + 0.492
y1454 putative membrane proteinchromosome CDS1611263 2280 - 0.442544
y1539 putative fimbrial proteinchromosome CDS1705756 555 + 0.443243
y1544 putative fimbrial proteinchromosome CDS1711336 609 + 0.425287
y1696 putative hemolysin activator proteinchromosome CDS1872539 1689 + 0.53878
y1697 putative hemagglutinin-like secreted proteinchromosome CDS1874239 7740 + 0.572481
y1701 putative hemagglutinin-like secreted proteinchromosome CDS1883637 2046 + 0.517595
y1704 hypotheticalchromosome CDS1886965 393 + 0.450382
y1834 hypotheticalchromosome CDS2018786 3138 + 0.543658
y1846 hypotheticalchromosome CDS2034735 2211 + 0.581637
y1847 hypotheticalchromosome CDS2036932 435 + 0.547126
y1858 hypotheticalchromosome CDS2048629 2448 - 0.461193
y1859 putative pilus assembly chaperonechromosome CDS2051247 753 - 0.446215
y1869 putative fimbrial proteinchromosome CDS2063668 543 + 0.425414
y1871 putative usher proteinchromosome CDS2065224 2613 + 0.493685
y1872 putative fimbrial componenetchromosome CDS2067827 1170 + 0.460684
y1873 putative pilin chaperonechromosome CDS2068993 804 + 0.482587
y1899 hypothetical proteinchromosome CDS2096512 714 - 0.436975
y2025 putative channel proteinchromosome CDS2232322 645 + 0.452713
y2267 putative hemolysinchromosome CDS2496626 4731 - 0.412598
y2268 putative hemolysin activator proteinchromosome CDS2501386 1635 - 0.372477
y2388 putative fimbrial precursorchromosome CDS2639085 570 + 0.473684
y2389 putative pilin chaperonechromosome CDS2639747 645 + 0.424806
y2390 putative outer membrane usher proteinchromosome CDS2640440 2592 + 0.494985
y2392 putative pilin chaperonechromosome CDS2644393 741 + 0.442645
y2785 hypothetical proteinchromosome CDS3079608 1869 - 0.387373
y2786 putative outer membrane proteinchromosome CDS3081476 1095 - 0.405479
y3169 hypotheticalchromosome CDS3488093 609 - 0.486043
y3170 hypotheticalchromosome CDS3488692 570 - 0.461404
y3195 putative type IV prepilin peptidasechromosome CDS3515572 915 - 0.357377
y3197 putative L-like GSP proteinchromosome CDS3516898 1191 - 0.319899
y3198 hypotheticalchromosome CDS3518072 957 - 0.314525
y3199 hypotheticalchromosome CDS3519037 669 - 0.312407
y3200 hypotheticalchromosome CDS3520008 591 - 0.338409
y3203 putative general secretion proteinchromosome CDS3522200 1512 - 0.39418
y3204 putative general secretion proteinchromosome CDS3523708 1923 - 0.333333
y3288 hypotheticalchromosome CDS3617319 1926 - 0.543095
y3326 putative protein transportchromosome CDS3659626 1131 - 0.476569
y3427 hypotheticalchromosome CDS3803738 1659 + 0.46956
y3428 putative adhesinchromosome CDS3805501 2001 + 0.588206
y3429 putative virG proteinchromosome CDS3808157 3771 + 0.531159
y3462 hypotheticalchromosome CDS3844754 744 - 0.537634
y3465 hypotheticalchromosome CDS3848140 381 - 0.514436
y3468 hypotheticalchromosome CDS3850980 414 + 0.444444
y3470 hypotheticalchromosome CDS3852162 273 + 0.450549
y3478 putative adhesinchromosome CDS3860464 1107 - 0.487805
y3479 putative chaperonechromosome CDS3861595 720 - 0.488889
y3482 hypotheticalchromosome CDS3865823 423 + 0.385343
y3484 hypotheticalchromosome CDS3867160 855 + 0.357895
y3485 hypotheticalchromosome CDS3868029 450 + 0.433333
y3486 hypotheticalchromosome CDS3868671 1233 + 0.334955
y3488 hypotheticalchromosome CDS3871261 813 + 0.328413
y3489 hypotheticalchromosome CDS3872070 834 + 0.302158
y3490 hypotheticalchromosome CDS3872887 771 + 0.35668
y3493 hypotheticalchromosome CDS3874708 1557 + 0.353886
y3573 hypotheticalchromosome CDS3956529 2286 + 0.547244
y3575 hypotheticalchromosome CDS3959310 621 - 0.599034
y3578 hypotheticalchromosome CDS3960892 150 - 0.513333
y3579 putative filamentous hemagglutininchromosome CDS3961333 9888 - 0.57231
y3580 putative hemolysin activator proteinchromosome CDS3971265 1689 - 0.541741
y3823 hypotheticalchromosome CDS4251752 1392 + 0.383621
y3824 hemolysin activator protein precursorchromosome CDS4253228 1788 + 0.457494
y3879 hypothetical proteinchromosome CDS4319911 585 - 0.466667
y3884 hypotheticalchromosome CDS4325060 9042 + 0.511944
y3925 hypotheticalchromosome CDS4384144 942 + 0.514862
y4060 putative chaperonechromosome CDS4504671 828 - 0.426329
y4061 putative outer membrane usher proteinchromosome CDS4505531 636 - 0.490566
y4062 putative membrane proteinchromosome CDS4506192 1830 - 0.448087
y4063 putative fimbrial-like proteinchromosome CDS4508097 645 - 0.427907
y4117 60 kDa inner-membrane proteinchromosome CDS4567959 1641 + 0.481414
yapC putative autotransporterchromosome CDS1274178 1917 - 0.47157
yapE putative autotransporter proteinchromosome CDS4280307 3255 + 0.488786
yapH putative autotransporter adhesinchromosome CDS3747888 11133 + 0.528878
yfaL putative ATP-binding transport componentchromosome CDS3984991 2985 + 0.448241
yscC Yop proteins translocation protein C homologpCD1 CDS8654 1824 - 0.454496
yscJ Yop proteins translocation lipoprotein JpCD1 CDS5005 735 - 0.428571
yscL Yop proteins translocation protein L homologpCD1 CDS3765 666 - 0.448949
yscN Yops secretion ATPase YscN homologpCD1 CDS18721 1320 - 0.508333
yscQ Yop proteins translocation protein QpCD1 CDS15973 924 - 0.481602
yscR Yop proteins translocation protein R homologpCD1 CDS15323 654 - 0.43578
yscS Yop proteins translocation protein S homologpCD1 CDS15055 267 - 0.453184
yscT Yop proteins translocation protein T homologpCD1 CDS14273 786 - 0.428753
yscU Yop proteins translocation protein U homologpCD1 CDS13209 1065 - 0.431925