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2024-05-22 23:17:40

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Agrobacterium tumefaciens str. C58, C58

Number of genes found: 172

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Agrobacterium tumefaciens str. C58, C58
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
AGR_C_1023 AGR_C_1023pSubName: Full=Flagellar biosynthetic protein; chromosome CDS563957 267 + 0.58427
AGR_C_1027 AGR_C_1027p chromosome CDS564297 2172 + 0.590239
AGR_C_1028 AGR_C_1028p chromosome CDS566465 756 + 0.575397
AGR_C_1130 AGR_C_1130p chromosome CDS624817 870 + 0.598851
AGR_C_1451 AGR_C_1451p chromosome CDS789216 1092 - 0.611722
AGR_C_1904 AGR_C_1904pRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS1026489 747 + 0.579652
AGR_C_2324 AGR_C_2324pRecName: Full=ATP-dependent Clp protease proteolytic subunit 2; EC=3.4.21.92; AltName: Full=Endopeptidase Clp 2; chromosome CDS1246063 633 + 0.581359
AGR_C_239 AGR_C_239p chromosome CDS155889 594 - 0.553872
AGR_C_240 AGR_C_240p chromosome CDS156479 636 - 0.540881
AGR_C_2400 AGR_C_2400pSubName: Full=DNA processing chain A; chromosome CDS1296964 1143 - 0.641295
AGR_C_2502 AGR_C_2502pSubName: Full=Uncharacterized protein; chromosome CDS1348302 561 - 0.611408
AGR_C_264 AGR_C_264pSubName: Full=Biopolymer transport protein; chromosome CDS166541 1023 + 0.650049
AGR_C_265 AGR_C_265pSubName: Full=Biopolymer transport protein; chromosome CDS167570 504 + 0.605159
AGR_C_2695 AGR_C_2695pSubName: Full=Uncharacterized protein; chromosome CDS1456140 504 + 0.607143
AGR_C_2781 AGR_C_2781pSubName: Full=Uncharacterized protein; chromosome CDS1498767 630 + 0.604762
AGR_C_2877 AGR_C_2877p chromosome CDS1548165 2631 - 0.59217
AGR_C_2879 AGR_C_2879pSubName: Full=Preprotein tranlocase protein; chromosome CDS1550821 348 - 0.571839
AGR_C_2960 AGR_C_2960pSubName: Full=Uncharacterized protein; chromosome CDS1589559 423 + 0.579196
AGR_C_2986 AGR_C_2986p chromosome CDS1604111 489 - 0.652352
AGR_C_3003 AGR_C_3003pRecName: Full=ATP-dependent Clp protease proteolytic subunit 1; EC=3.4.21.92; AltName: Full=Endopeptidase Clp 1; chromosome CDS1613492 609 - 0.582923
AGR_C_3050 AGR_C_3050p chromosome CDS1640541 882 - 0.578231
AGR_C_3132 AGR_C_3132pRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS1689534 804 - 0.575871
AGR_C_3133 AGR_C_3133p chromosome CDS1690334 744 - 0.615591
AGR_C_3135 AGR_C_3135pRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS1691128 213 - 0.553991
AGR_C_3202 AGR_C_3202pSubName: Full=Uncharacterized protein; chromosome CDS1731190 981 + 0.599388
AGR_C_3361 AGR_C_3361pSubName: Full=Putative transmembrane protein; chromosome CDS1809440 3384 - 0.60461
AGR_C_3523 AGR_C_3523p chromosome CDS1904013 1134 - 0.598765
AGR_C_3578 AGR_C_3578p chromosome CDS1934557 216 - 0.550926
AGR_C_371 AGR_C_371pSubName: Full=Components of type IV pilus; chromosome CDS220701 987 - 0.567376
AGR_C_372 AGR_C_372pSubName: Full=Components of type IV pilus; chromosome CDS221697 1005 - 0.549254
AGR_C_373 AGR_C_373p chromosome CDS222716 1323 - 0.580499
AGR_C_376 AGR_C_376p chromosome CDS224225 1389 - 0.575234
AGR_C_379 AGR_C_379pSubName: Full=Component of type IV pilus; chromosome CDS226292 1584 - 0.568182
AGR_C_380 AGR_C_380pSubName: Full=Components of type IV pilus; chromosome CDS227872 807 - 0.5886
AGR_C_382 AGR_C_382pSubName: Full=Components of type IV pilus, prepilin peptidase; chromosome CDS228812 513 - 0.479532
AGR_C_383 AGR_C_383p chromosome CDS229426 261 - 0.547893
AGR_C_384 AGR_C_384p chromosome CDS230034 411 + 0.574209
AGR_C_4125 AGR_C_4125p chromosome CDS2242868 807 - 0.563817
AGR_C_4407 AGR_C_4407p chromosome CDS2401422 1080 + 0.65463
AGR_C_4582 AGR_C_4582pSubName: Full=Agrobacterium chromosomal virulence protein B; chromosome CDS2492442 1371 + 0.597374
AGR_C_4586 AGR_C_4586pSubName: Full=Uncharacterized protein; chromosome CDS2495748 2325 + 0.517419
AGR_C_4622 AGR_C_4622p chromosome CDS2525229 1542 + 0.597925
AGR_C_4881 AGR_C_4881pRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS2676672 1437 - 0.60682
AGR_C_4890 AGR_C_4890p chromosome CDS2681738 1665 + 0.612012
AGR_C_588 AGR_C_588pSubName: Full=Proteinase IV; chromosome CDS328963 954 + 0.57652
AGR_C_596 AGR_C_596pRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome CDS332737 489 + 0.560327
AGR_C_674 AGR_C_674p chromosome CDS375862 1803 - 0.584027
AGR_C_731 AGR_C_731p chromosome CDS412617 834 + 0.640288
AGR_C_9 AGR_C_9pRecName: Full=Protein-export protein SecB; chromosome CDS3705 483 - 0.573499
AGR_C_922 AGR_C_922pRecName: Full=Flagellar M-ring protein; chromosome CDS511898 1701 + 0.60435
AGR_C_963 AGR_C_963pRecName: Full=Flagellar biosynthetic protein FliP; chromosome CDS535579 738 - 0.571816
AGR_C_974 AGR_C_974pRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS540523 339 - 0.584071
AGR_C_980 AGR_C_980pRecName: Full=Flagellum-specific ATP synthase; EC=3.6.3.14; chromosome CDS542412 1422 - 0.630098
AGR_C_988 AGR_C_988p chromosome CDS547397 588 + 0.568027
AGR_C_991 AGR_C_991pSubName: Full=Flagellar biosynthetic protein; chromosome CDS549181 1083 + 0.55771
AGR_L_1720 AGR_L_1720pSubName: Full=Copper tolerance protein; chromosome CDS967195 1479 + 0.62069
AGR_L_1764 AGR_L_1764pSubName: Full=Ice nucleation-like protein; chromosome CDS990206 5196 + 0.624904
AGR_L_2125 AGR_L_2125pSubName: Full=Uncharacterized protein; chromosome CDS1217407 465 - 0.619355
AGR_L_2236 AGR_L_2236p chromosome CDS1274534 858 + 0.578089
AGR_L_2238 AGR_L_2238pSubName: Full=TolR protein; chromosome CDS1275450 459 + 0.616558
AGR_L_2244 AGR_L_2244p chromosome CDS1277069 1332 + 0.593844
AGR_L_2559 AGR_L_2559p chromosome CDS1469750 1374 - 0.591703
AGR_L_2621 AGR_L_2621p chromosome CDS1504799 2760 - 0.607246
AGR_L_2877 AGR_L_2877pSubName: Full=Uncharacterized protein; chromosome CDS1647226 756 + 0.600529
AGR_L_297 AGR_L_297pSubName: Full=Fimbrial chaperone; chromosome CDS175743 717 + 0.617852
AGR_L_299 AGR_L_299pSubName: Full=Fimbrial usher protein; chromosome CDS176431 2439 + 0.605986
AGR_L_3206 AGR_L_3206pSubName: Full=Putative ftsk cell division protein; chromosome CDS1848551 2733 + 0.624954
AGR_L_58 AGR_L_58pSubName: Full=Agrobacterium virulence virD4-like protein; chromosome CDS31437 1665 - 0.577177
AGR_L_584 AGR_L_584pSubName: Full=Uncharacterized protein; chromosome CDS344442 957 - 0.560084
AGR_pAT_160 AGR_pAT_160pSubName: Full=Conjugal transfer protein; AT CDS113845 1920 - 0.581771
AGR_pAT_222 AGR_pAT_222pSubName: Full=Type IV secretion protein AvhB3; AT CDS161800 342 + 0.570175
AGR_pAT_223 AGR_pAT_223p AT CDS162128 2388 + 0.581658
AGR_pAT_226 AGR_pAT_226p AT CDS165352 1032 + 0.582364
AGR_pAT_228 AGR_pAT_228pSubName: Full=Type IV secretion protein AvhB8; AT CDS166689 672 + 0.56994
AGR_pAT_229 AGR_pAT_229p AT CDS167357 855 + 0.597661
AGR_pAT_231 AGR_pAT_231pSubName: Full=Type IV secretion protein AvhB10; AT CDS168226 1173 + 0.56948
AGR_pAT_511 AGR_pAT_511pSubName: Full=Autotransporting virulence factor family member; AT CDS347399 3579 - 0.563286
AGR_pAT_528 AGR_pAT_528pSubName: Full=Autotransporting virulence factor family member; AT CDS356662 2766 - 0.60846
AGR_pAT_bx65 AGR_pAT_bx65pSubName: Full=Type IV secretion protein AvhB11; AT CDS169407 1011 + 0.53907
Atu0148 conserved hypothetical protein chromosome CDS156604 705 - 0.546099
Atu0226 PilQ chromosome CDS230270 375 + 0.578667
Atu0384 60 kd inner-membrane protein chromosome CDS376062 1803 - 0.584027
Atu1305 DNA processing chain A chromosome CDS1297077 1143 - 0.641295
Atu1355 conserved hypothetical protein chromosome CDS1348415 561 - 0.611408
Atu1460 conserved hypothetical protein chromosome CDS1456254 504 + 0.607143
Atu1508 conserved hypothetical protein chromosome CDS1498881 630 + 0.604762
Atu1608 conserved hypothetical protein chromosome CDS1589673 423 + 0.579196
Atu1745 conserved hypothetical protein chromosome CDS1731304 981 + 0.599388
Atu2524 conserved hypothetical protein chromosome CDS2495861 2325 + 0.517419
Atu3384 conserved hypothetical protein chromosome CDS426775 756 - 0.600529
Atu3553 conserved hypothetical protein chromosome CDS603948 1059 + 0.581681
Atu3773 conserved hypothetical protein chromosome CDS856885 465 + 0.619355
Atu4580 hypothetical protein chromosome CDS1729360 957 + 0.560084
Atu4731 fimbrial usher protein chromosome CDS1895888 2439 - 0.605986
Atu4732 fimbrial chaperone chromosome CDS1898298 717 - 0.617852
acvB agrobacterium chromosomal virulence protein B chromosome CDS2492555 1371 + 0.597374
avhB10 agrobacterium virulence homologue virB10 AT CDS167829 1173 + 0.56948
avhB11 agrobacterium virulence homologue virB11 AT CDS169010 1011 + 0.53907
avhB3 agrobacterium virulence homologue VirB3 AT CDS161403 342 + 0.570175
avhB4 agrobacterium virulence homologue virB4 AT CDS161845 2274 + 0.582234
avhB6 agrobacterium virulence homologue VirB6 AT CDS165051 936 + 0.57906
avhB8 agrobacterium virulence homologue virB8 AT CDS166292 672 + 0.56994
avhB9 agrobacterium virulence homologue virB9 AT CDS166963 852 + 0.598592
avhD4 agrobacteirum virulence homologue virD4 chromosome CDS2041656 1665 + 0.577177
bapA autotransporter protein AT CDS347002 3108 - 0.566281
clpP ATP-dependent Clp protease, proteolytic subunit chromosome CDS1246176 633 + 0.581359
clpP ATP-dependent Clp protease, proteolytic subunit chromosome CDS1613606 609 - 0.582923
clpP ATP-dependent Clp protease, proteolytic subunit chromosome CDS2242982 606 - 0.566007
copB copper tolerance protein chromosome CDS1106083 1479 - 0.62069
ctpA components of type IV pilus, pilin subunit chromosome CDS229626 192 - 0.567708
ctpB components of type IV pilus, prepilin peptidase chromosome CDS229012 513 - 0.479532
ctpC components of type IV pilus chromosome CDS228072 807 - 0.5886
ctpD component of type IV pilus chromosome CDS226492 1584 - 0.568182
ctpF components of type IV pilus chromosome CDS224425 1284 - 0.573988
ctpG component of type IV pilus chromosome CDS222916 1476 - 0.586043
ctpH components of type IV pilus chromosome CDS221897 1005 - 0.549254
ctpI components of type IV pilus chromosome CDS220901 987 - 0.567376
exbB biopolymer transport protein chromosome CDS166810 954 + 0.650943
exbD biopolymer transport protein chromosome CDS167770 504 + 0.605159
ffh signal recognition particle protein chromosome CDS2681942 1572 + 0.616412
filN flagellar motor switch protein FliN chromosome CDS547644 540 + 0.574074
flhA flagellar biosynthesis protein chromosome CDS564580 2088 + 0.591954
flhB flagellar biosynthetic protein chromosome CDS549380 1083 + 0.55771
fliE flagellar hook-basal body complex protein chromosome CDS540722 339 - 0.584071
fliF flagellar M-ring protein chromosome CDS512115 1683 + 0.604872
fliI flagellum-specific ATP synthase chromosome CDS542611 1422 - 0.630098
fliP flagellar biosynthetic protein chromosome CDS535778 738 - 0.571816
fliQ flagellar biosynthetic protein chromosome CDS564156 267 + 0.58427
fliR flagellar biosynthetic protein FLIR chromosome CDS566664 756 + 0.575397
fstY cell division particle chromosome CDS2676783 1437 - 0.60682
ftsK cell division protein chromosome CDS223473 2724 - 0.625918
ina ice nucleation protein homolog chromosome CDS1079355 5196 - 0.624904
lspA lipoprotein signal peptidase chromosome CDS332937 489 + 0.560327
nodT nodulation protein T precursor chromosome CDS2525429 1455 + 0.603436
prlA Preprotein translocase SECY subunit chromosome CDS1904127 1341 - 0.59135
secA preprotein translocase SECA subunit chromosome CDS567249 2709 + 0.608712
secB protein-export protein SECB chromosome CDS3907 483 - 0.573499
secD protein-export membrane protein SECD chromosome CDS1548279 2574 - 0.592852
secE secretion protein chromosome CDS1934670 201 - 0.547264
secG protein-export membrane protein SECG chromosome CDS1604225 474 - 0.660338
sipf prokaryotic type I signal peptidase chromosome CDS1026599 747 + 0.579652
sohB proteinase sohB chromosome CDS625019 867 + 0.599769
sppA proteinase IV chromosome CDS329163 954 + 0.57652
tatA SEC-independent protein translocase protein chromosome CDS1691242 213 - 0.553991
tatB SEC-independent protein translocase protein chromosome CDS1690448 744 - 0.615591
tatC SEC-independent protein translocase protein chromosome CDS1689648 804 - 0.575871
tolB tolB protein chromosome CDS1640654 882 - 0.578231
tolB tolB protein chromosome CDS796356 1308 - 0.595566
tolQ tolQ Protein chromosome CDS799365 720 - 0.584722
tolR tolR protein chromosome CDS798848 459 - 0.616558
traF conjugal transfer protein, Dtr system Ti CDS147286 531 + 0.627119
traG conjugal transfer protein AT CDS113538 1920 - 0.581771
traG conjugal transfer protein, Dtr system Ti CDS141249 1977 - 0.615073
trbB conjugal transfer protein Ti CDS50266 972 - 0.631687
trbC conjugal transfer protein Ti CDS49875 402 - 0.634328
trbD conjugal transfer protein Ti CDS49583 300 - 0.65
trbE conjugal transfer protein Ti CDS47104 2469 - 0.629405
trbF conjugal transfer protein Ti CDS44247 663 - 0.61991
trbG conjugal transfer protein Ti CDS43375 855 - 0.624561
trbI conjugal transfer protein Ti CDS41570 1317 - 0.603645
trbJ conjugal transfer protein Ti CDS46329 804 - 0.60199
trbL conjugal transfer protein Ti CDS44924 1197 - 0.644946
virB10 component of type IV secretion system Ti CDS191119 1134 + 0.578483
virB11 component of type IV secretion system Ti CDS192293 1035 + 0.551691
virB3 component of type IV secretion system Ti CDS184979 327 + 0.568807
virB4 component of type IV secretion system Ti CDS185305 2370 + 0.552321
virB6 component of type IV secretion system Ti CDS188454 888 + 0.542793
virB8 component of type IV secretion system Ti CDS189531 714 + 0.54902
virB9 component of type IV secretion system Ti CDS190241 882 + 0.54195
virD4 virA/G regulated protein Ti CDS199956 2007 + 0.530145
yajC preprotein tranlocase protein chromosome CDS1550935 348 - 0.571839
yapE autotransporter protein AT CDS356265 2607 - 0.612965