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2024-05-04 03:04:35

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Agrobacterium tumefaciens str. C58, C58

Number of genes found: 172

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Agrobacterium tumefaciens str. C58, C58
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
AGR_C_1023 AGR_C_1023pchromosome CDS563957 267 + 0.58427
AGR_C_1027 AGR_C_1027pchromosome CDS564297 2172 + 0.590239
AGR_C_1028 AGR_C_1028pchromosome CDS566465 756 + 0.575397
AGR_C_1130 AGR_C_1130pchromosome CDS624817 870 + 0.598851
AGR_C_1451 AGR_C_1451pchromosome CDS789216 1092 - 0.611722
AGR_C_1904 AGR_C_1904pchromosome CDS1026489 747 + 0.579652
AGR_C_2324 AGR_C_2324pchromosome CDS1246063 633 + 0.581359
AGR_C_239 AGR_C_239pchromosome CDS155889 594 - 0.553872
AGR_C_240 AGR_C_240pchromosome CDS156479 636 - 0.540881
AGR_C_2400 AGR_C_2400pchromosome CDS1296964 1143 - 0.641295
AGR_C_2502 AGR_C_2502pchromosome CDS1348302 561 - 0.611408
AGR_C_264 AGR_C_264pchromosome CDS166541 1023 + 0.650049
AGR_C_265 AGR_C_265pchromosome CDS167570 504 + 0.605159
AGR_C_2695 AGR_C_2695pchromosome CDS1456140 504 + 0.607143
AGR_C_2781 AGR_C_2781pchromosome CDS1498767 630 + 0.604762
AGR_C_2877 AGR_C_2877pchromosome CDS1548165 2631 - 0.59217
AGR_C_2879 AGR_C_2879pchromosome CDS1550821 348 - 0.571839
AGR_C_2960 AGR_C_2960pchromosome CDS1589559 423 + 0.579196
AGR_C_2986 AGR_C_2986pchromosome CDS1604111 489 - 0.652352
AGR_C_3003 AGR_C_3003pchromosome CDS1613492 609 - 0.582923
AGR_C_3050 AGR_C_3050pchromosome CDS1640541 882 - 0.578231
AGR_C_3132 AGR_C_3132pchromosome CDS1689534 804 - 0.575871
AGR_C_3133 AGR_C_3133pchromosome CDS1690334 744 - 0.615591
AGR_C_3135 AGR_C_3135pchromosome CDS1691128 213 - 0.553991
AGR_C_3202 AGR_C_3202pchromosome CDS1731190 981 + 0.599388
AGR_C_3361 AGR_C_3361pchromosome CDS1809440 3384 - 0.60461
AGR_C_3523 AGR_C_3523pchromosome CDS1904013 1134 - 0.598765
AGR_C_3578 AGR_C_3578pchromosome CDS1934557 216 - 0.550926
AGR_C_371 AGR_C_371pchromosome CDS220701 987 - 0.567376
AGR_C_372 AGR_C_372pchromosome CDS221697 1005 - 0.549254
AGR_C_373 AGR_C_373pchromosome CDS222716 1323 - 0.580499
AGR_C_376 AGR_C_376pchromosome CDS224225 1389 - 0.575234
AGR_C_379 AGR_C_379pchromosome CDS226292 1584 - 0.568182
AGR_C_380 AGR_C_380pchromosome CDS227872 807 - 0.5886
AGR_C_382 AGR_C_382pchromosome CDS228812 513 - 0.479532
AGR_C_383 AGR_C_383pchromosome CDS229426 261 - 0.547893
AGR_C_384 AGR_C_384pchromosome CDS230034 411 + 0.574209
AGR_C_4125 AGR_C_4125pchromosome CDS2242868 807 - 0.563817
AGR_C_4407 AGR_C_4407pchromosome CDS2401422 1080 + 0.65463
AGR_C_4582 AGR_C_4582pchromosome CDS2492442 1371 + 0.597374
AGR_C_4586 AGR_C_4586pchromosome CDS2495748 2325 + 0.517419
AGR_C_4622 AGR_C_4622pchromosome CDS2525229 1542 + 0.597925
AGR_C_4881 AGR_C_4881pchromosome CDS2676672 1437 - 0.60682
AGR_C_4890 AGR_C_4890pchromosome CDS2681738 1665 + 0.612012
AGR_C_588 AGR_C_588pchromosome CDS328963 954 + 0.57652
AGR_C_596 AGR_C_596pchromosome CDS332737 489 + 0.560327
AGR_C_674 AGR_C_674pchromosome CDS375862 1803 - 0.584027
AGR_C_731 AGR_C_731pchromosome CDS412617 834 + 0.640288
AGR_C_9 AGR_C_9pchromosome CDS3705 483 - 0.573499
AGR_C_922 AGR_C_922pchromosome CDS511898 1701 + 0.60435
AGR_C_963 AGR_C_963pchromosome CDS535579 738 - 0.571816
AGR_C_974 AGR_C_974pchromosome CDS540523 339 - 0.584071
AGR_C_980 AGR_C_980pchromosome CDS542412 1422 - 0.630098
AGR_C_988 AGR_C_988pchromosome CDS547397 588 + 0.568027
AGR_C_991 AGR_C_991pchromosome CDS549181 1083 + 0.55771
AGR_L_1720 AGR_L_1720pchromosome CDS967195 1479 + 0.62069
AGR_L_1764 AGR_L_1764pchromosome CDS990206 5196 + 0.624904
AGR_L_2125 AGR_L_2125pchromosome CDS1217407 465 - 0.619355
AGR_L_2236 AGR_L_2236pchromosome CDS1274534 858 + 0.578089
AGR_L_2238 AGR_L_2238pchromosome CDS1275450 459 + 0.616558
AGR_L_2244 AGR_L_2244pchromosome CDS1277069 1332 + 0.593844
AGR_L_2559 AGR_L_2559pchromosome CDS1469750 1374 - 0.591703
AGR_L_2621 AGR_L_2621pchromosome CDS1504799 2760 - 0.607246
AGR_L_2877 AGR_L_2877pchromosome CDS1647226 756 + 0.600529
AGR_L_297 AGR_L_297pchromosome CDS175743 717 + 0.617852
AGR_L_299 AGR_L_299pchromosome CDS176431 2439 + 0.605986
AGR_L_3206 AGR_L_3206pchromosome CDS1848551 2733 + 0.624954
AGR_L_58 AGR_L_58pchromosome CDS31437 1665 - 0.577177
AGR_L_584 AGR_L_584pchromosome CDS344442 957 - 0.560084
AGR_pAT_160 AGR_pAT_160pAT CDS113845 1920 - 0.581771
AGR_pAT_222 AGR_pAT_222pAT CDS161800 342 + 0.570175
AGR_pAT_223 AGR_pAT_223pAT CDS162128 2388 + 0.581658
AGR_pAT_226 AGR_pAT_226pAT CDS165352 1032 + 0.582364
AGR_pAT_228 AGR_pAT_228pAT CDS166689 672 + 0.56994
AGR_pAT_229 AGR_pAT_229pAT CDS167357 855 + 0.597661
AGR_pAT_231 AGR_pAT_231pAT CDS168226 1173 + 0.56948
AGR_pAT_511 AGR_pAT_511pAT CDS347399 3579 - 0.563286
AGR_pAT_528 AGR_pAT_528pAT CDS356662 2766 - 0.60846
AGR_pAT_bx65 AGR_pAT_bx65pAT CDS169407 1011 + 0.53907
Atu0148 conserved hypothetical proteinchromosome CDS156604 705 - 0.546099
Atu0226 PilQchromosome CDS230270 375 + 0.578667
Atu0384 60 kd inner-membrane proteinchromosome CDS376062 1803 - 0.584027
Atu1305 DNA processing chain Achromosome CDS1297077 1143 - 0.641295
Atu1355 conserved hypothetical proteinchromosome CDS1348415 561 - 0.611408
Atu1460 conserved hypothetical proteinchromosome CDS1456254 504 + 0.607143
Atu1508 conserved hypothetical proteinchromosome CDS1498881 630 + 0.604762
Atu1608 conserved hypothetical proteinchromosome CDS1589673 423 + 0.579196
Atu1745 conserved hypothetical proteinchromosome CDS1731304 981 + 0.599388
Atu2524 conserved hypothetical proteinchromosome CDS2495861 2325 + 0.517419
Atu3384 conserved hypothetical proteinchromosome CDS426775 756 - 0.600529
Atu3553 conserved hypothetical proteinchromosome CDS603948 1059 + 0.581681
Atu3773 conserved hypothetical proteinchromosome CDS856885 465 + 0.619355
Atu4580 hypothetical proteinchromosome CDS1729360 957 + 0.560084
Atu4731 fimbrial usher proteinchromosome CDS1895888 2439 - 0.605986
Atu4732 fimbrial chaperonechromosome CDS1898298 717 - 0.617852
acvB agrobacterium chromosomal virulence protein Bchromosome CDS2492555 1371 + 0.597374
avhB10 agrobacterium virulence homologue virB10AT CDS167829 1173 + 0.56948
avhB11 agrobacterium virulence homologue virB11AT CDS169010 1011 + 0.53907
avhB3 agrobacterium virulence homologue VirB3AT CDS161403 342 + 0.570175
avhB4 agrobacterium virulence homologue virB4AT CDS161845 2274 + 0.582234
avhB6 agrobacterium virulence homologue VirB6AT CDS165051 936 + 0.57906
avhB8 agrobacterium virulence homologue virB8AT CDS166292 672 + 0.56994
avhB9 agrobacterium virulence homologue virB9AT CDS166963 852 + 0.598592
avhD4 agrobacteirum virulence homologue virD4chromosome CDS2041656 1665 + 0.577177
bapA autotransporter proteinAT CDS347002 3108 - 0.566281
clpP ATP-dependent Clp protease, proteolytic subunitchromosome CDS2242982 606 - 0.566007
clpP ATP-dependent Clp protease, proteolytic subunitchromosome CDS1613606 609 - 0.582923
clpP ATP-dependent Clp protease, proteolytic subunitchromosome CDS1246176 633 + 0.581359
copB copper tolerance proteinchromosome CDS1106083 1479 - 0.62069
ctpA components of type IV pilus, pilin subunitchromosome CDS229626 192 - 0.567708
ctpB components of type IV pilus, prepilin peptidasechromosome CDS229012 513 - 0.479532
ctpC components of type IV piluschromosome CDS228072 807 - 0.5886
ctpD component of type IV piluschromosome CDS226492 1584 - 0.568182
ctpF components of type IV piluschromosome CDS224425 1284 - 0.573988
ctpG component of type IV piluschromosome CDS222916 1476 - 0.586043
ctpH components of type IV piluschromosome CDS221897 1005 - 0.549254
ctpI components of type IV piluschromosome CDS220901 987 - 0.567376
exbB biopolymer transport proteinchromosome CDS166810 954 + 0.650943
exbD biopolymer transport proteinchromosome CDS167770 504 + 0.605159
ffh signal recognition particle proteinchromosome CDS2681942 1572 + 0.616412
filN flagellar motor switch protein FliNchromosome CDS547644 540 + 0.574074
flhA flagellar biosynthesis proteinchromosome CDS564580 2088 + 0.591954
flhB flagellar biosynthetic proteinchromosome CDS549380 1083 + 0.55771
fliE flagellar hook-basal body complex proteinchromosome CDS540722 339 - 0.584071
fliF flagellar M-ring proteinchromosome CDS512115 1683 + 0.604872
fliI flagellum-specific ATP synthasechromosome CDS542611 1422 - 0.630098
fliP flagellar biosynthetic proteinchromosome CDS535778 738 - 0.571816
fliQ flagellar biosynthetic proteinchromosome CDS564156 267 + 0.58427
fliR flagellar biosynthetic protein FLIRchromosome CDS566664 756 + 0.575397
fstY cell division particlechromosome CDS2676783 1437 - 0.60682
ftsK cell division proteinchromosome CDS223473 2724 - 0.625918
ina ice nucleation protein homologchromosome CDS1079355 5196 - 0.624904
lspA lipoprotein signal peptidasechromosome CDS332937 489 + 0.560327
nodT nodulation protein T precursorchromosome CDS2525429 1455 + 0.603436
prlA Preprotein translocase SECY subunitchromosome CDS1904127 1341 - 0.59135
secA preprotein translocase SECA subunitchromosome CDS567249 2709 + 0.608712
secB protein-export protein SECBchromosome CDS3907 483 - 0.573499
secD protein-export membrane protein SECDchromosome CDS1548279 2574 - 0.592852
secE secretion proteinchromosome CDS1934670 201 - 0.547264
secG protein-export membrane protein SECGchromosome CDS1604225 474 - 0.660338
sipf prokaryotic type I signal peptidasechromosome CDS1026599 747 + 0.579652
sohB proteinase sohBchromosome CDS625019 867 + 0.599769
sppA proteinase IVchromosome CDS329163 954 + 0.57652
tatA SEC-independent protein translocase proteinchromosome CDS1691242 213 - 0.553991
tatB SEC-independent protein translocase proteinchromosome CDS1690448 744 - 0.615591
tatC SEC-independent protein translocase proteinchromosome CDS1689648 804 - 0.575871
tolB tolB proteinchromosome CDS796356 1308 - 0.595566
tolB tolB proteinchromosome CDS1640654 882 - 0.578231
tolQ tolQ Proteinchromosome CDS799365 720 - 0.584722
tolR tolR proteinchromosome CDS798848 459 - 0.616558
traF conjugal transfer protein, Dtr systemTi CDS147286 531 + 0.627119
traG conjugal transfer proteinAT CDS113538 1920 - 0.581771
traG conjugal transfer protein, Dtr systemTi CDS141249 1977 - 0.615073
trbB conjugal transfer proteinTi CDS50266 972 - 0.631687
trbC conjugal transfer proteinTi CDS49875 402 - 0.634328
trbD conjugal transfer proteinTi CDS49583 300 - 0.65
trbE conjugal transfer proteinTi CDS47104 2469 - 0.629405
trbF conjugal transfer proteinTi CDS44247 663 - 0.61991
trbG conjugal transfer proteinTi CDS43375 855 - 0.624561
trbI conjugal transfer proteinTi CDS41570 1317 - 0.603645
trbJ conjugal transfer proteinTi CDS46329 804 - 0.60199
trbL conjugal transfer proteinTi CDS44924 1197 - 0.644946
virB10 component of type IV secretion systemTi CDS191119 1134 + 0.578483
virB11 component of type IV secretion systemTi CDS192293 1035 + 0.551691
virB3 component of type IV secretion systemTi CDS184979 327 + 0.568807
virB4 component of type IV secretion systemTi CDS185305 2370 + 0.552321
virB6 component of type IV secretion systemTi CDS188454 888 + 0.542793
virB8 component of type IV secretion systemTi CDS189531 714 + 0.54902
virB9 component of type IV secretion systemTi CDS190241 882 + 0.54195
virD4 virA/G regulated proteinTi CDS199956 2007 + 0.530145
yajC preprotein tranlocase proteinchromosome CDS1550935 348 - 0.571839
yapE autotransporter proteinAT CDS356265 2607 - 0.612965