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2024-05-17 17:08:01

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 134

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
STM0307 homology to Shigella VirG proteinSubName: Full=Homology to Shigella VirG protein; chromosome CDS350943 408 - 0.470588
STM0912 Fels-1 prophage protease subunits of ATP-dependent proteasesRecName: Full=ATP-dependent Clp protease proteolytic subunit; chromosome CDS983263 2187 + 0.576589
STM1033 Gifsy-2 prophage Clp protease-like proteinRecName: Full=ATP-dependent Clp protease proteolytic subunit; chromosome CDS1120666 2082 + 0.524976
STM2605 Gifsy-1 prophage proteinSubName: Full=Gifsy-1 prophage protein; chromosome CDS2752336 1497 - 0.565798
STM2690 putative outer membrane efflux proteinSubName: Full=Putative outer membrane efflux protein; chromosome CDS2839118 1410 + 0.568794
STM2706 Fels-2 prophage proteinSubName: Full=Fels-2 prophage protein; chromosome CDS2853995 1575 - 0.524444
STM2787 tricarboxylic transport proteinSubName: Full=Tricarboxylic transport protein; chromosome CDS2935579 435 + 0.57931
STM3691 putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS3881228 4386 + 0.527816
STM4258 putative methyl-accepting chemotaxis proteinSubName: Full=Putative methyl-accepting chemotaxis protein; chromosome CDS4478486 1389 + 0.367891
STM4259 putative ABC exporter outer membrane component-like proteinSubName: Full=Putative ABC exporter outer membrane component-like protein; chromosome CDS4479864 1320 + 0.367424
STM4575 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS4830411 690 - 0.466667
STM4595 putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4852849 546 - 0.501832
bcfA fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS24469 543 + 0.517495
bcfB fimbrial chaparoneSubName: Full=Fimbrial chaparone; chromosome CDS25112 687 + 0.509461
bcfC fimbrial usherSubName: Full=Fimbrial usher; chromosome CDS25803 2622 + 0.544622
bcfD fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS28425 1008 + 0.500992
bcfE fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29433 546 + 0.494505
bcfF fimbrial subunitSubName: Full=Fimbrial subunit; chromosome CDS29994 519 + 0.55684
bcfG fimbrial chaparoneSubName: Full=Fimbrial chaparone; chromosome CDS30478 732 + 0.539617
bigA putative surface-exposed virulence proteinRecName: Full=Putative surface-exposed virulence protein BigA; Flags: Precursor; chromosome CDS3629167 5862 + 0.573524
ccmD heme exporter protein CSubName: Full=Heme exporter protein C; chromosome CDS2351391 213 - 0.694836
ccmD heme exporter protein CSubName: Full=Heme exporter protein C; chromosome CDS4016319 213 - 0.694836
clpP proteolytic subunit of clpA-clpP ATP-dependent serine proteaseRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; Flags: Precursor; chromosome CDS503210 624 + 0.512821
cpxP periplasmic repressor of cpx regulon by interaction with CpxASubName: Full=Periplasmic repressor of cpx regulon by interaction with CpxA; chromosome CDS4270595 501 + 0.506986
exbB uptake of enterochelinRecName: Full=Biopolymer transport protein ExbB; chromosome CDS3320009 735 - 0.556463
exbD uptake of enterochelinSubName: Full=Uptake of enterochelin; chromosome CDS3319577 426 - 0.507042
ffh 4.5S-RNP proteinRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS2817202 1362 - 0.549927
fimC periplasmic chaperone, required for type 1 fimbriaeRecName: Full=Chaperone protein FimC; Flags: Precursor; chromosome CDS605325 693 + 0.503608
fimD outer membrane usher proteinRecName: Full=Outer membrane usher protein FimD; Flags: Precursor; chromosome CDS606048 2613 + 0.556831
fimF putative fimbrial proteinRecName: Full=Fimbrial-like protein FimF; Flags: Precursor; chromosome CDS609692 519 + 0.55106
fimH minor fimbrial subunitRecName: Full=Protein FimH; Flags: Precursor; chromosome CDS608675 1008 + 0.516865
fimI fimbrial protein internal segmentRecName: Full=Fimbrin-like protein FimI; Flags: Precursor; chromosome CDS604748 534 + 0.541198
flgM anti-FliA factorRecName: Full=Negative regulator of flagellin synthesis; AltName: Full=Anti-sigma-28 factor; chromosome CDS1257046 294 - 0.517007
flgN flagellar biosynthesis proteinRecName: Full=Flagella synthesis protein FlgN; chromosome CDS1256619 423 - 0.536643
flhA flagellar biosynthesis proteinRecName: Full=Flagellar biosynthesis protein FlhA; chromosome CDS2008212 2079 - 0.559885
flhB putative part of export apparatus for flagellar proteinsRecName: Full=Flagellar biosynthetic protein FlhB; chromosome CDS2010283 1152 - 0.559028
fliE putative flagellar hook-basal body proteinRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS2056008 315 - 0.568254
fliF basal-body MS (membrane and supramembrane)-ring and collar proteinRecName: Full=Flagellar M-ring protein; chromosome CDS2056539 1683 + 0.571598
fliH flagellar biosynthesis proteinRecName: Full=Flagellar assembly protein FliH; chromosome CDS2059202 708 + 0.60452
fliI flagellum-specific ATP synthaseRecName: Full=Flagellum-specific ATP synthase; EC=3.6.3.14; chromosome CDS2059909 1371 + 0.60248
fliJ flagellar FliJ proteinRecName: Full=Flagellar FliJ protein; chromosome CDS2061301 444 + 0.513514
fliN flagellar biosynthesis proteinRecName: Full=Flagellar motor switch protein FliN; chromosome CDS2064536 414 + 0.548309
fliP flagellar biosynthesis proteinRecName: Full=Flagellar biosynthetic protein FliP; Flags: Precursor; chromosome CDS2065326 738 + 0.536585
fliQ flagellar biosynthesis proteinRecName: Full=Flagellar biosynthetic protein FliQ; chromosome CDS2066073 270 + 0.518519
fliR putative flagellar biosynthetic proteinRecName: Full=Flagellar biosynthetic protein FliR; chromosome CDS2066351 795 + 0.515723
fliS repressor of class 3a and 3b operons (RflA activity)RecName: Full=Flagellar protein FliS; chromosome CDS2050820 408 + 0.5
ftsY GTPase domain of cell division membrane proteinRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS3738746 1476 - 0.550135
hofB putative integral membrane proteinSubName: Full=Putative integral membrane protein; chromosome CDS166319 1386 - 0.554834
hofC putative component in type IV pilin biogenesisSubName: Full=Putative component in type IV pilin biogenesis; chromosome CDS165127 1203 - 0.544472
hofQ putative transport proteinSubName: Full=Putative transport protein; chromosome CDS3643213 1239 - 0.563358
hopD leader peptidase HopDRecName: Full=Leader peptidase HopD; chromosome CDS3596910 468 + 0.529915
invA invasion proteinRecName: Full=Invasion protein InvA; chromosome CDS3038400 2058 - 0.455782
invC surface presentation of antigensRecName: Full=Probable ATP synthase SpaL; EC=3.6.3.14; AltName: Full=Invasion protein InvC; chromosome CDS3036677 1296 - 0.542438
invG outer membrane invasion proteinRecName: Full=Protein InvG; Flags: Precursor; chromosome CDS3041597 1689 - 0.46418
lepB leader peptidase (signal peptidase I), serine proteaseRecName: Full=Signal peptidase I; Short=SPase I; EC=3.4.21.89; AltName: Full=Leader peptidase I; chromosome CDS2725781 975 - 0.531282
lpfA long polar fimbriaRecName: Full=Long polar fimbria protein A; Flags: Precursor; chromosome CDS3827449 537 - 0.463687
lpfB long polar fimbrial chaperoneRecName: Full=Chaperone protein LpfB; Flags: Precursor; chromosome CDS3826666 699 - 0.447783
lpfC long polar fimbrial outer membrane usher proteinRecName: Full=Outer membrane usher protein LpfC; Flags: Precursor; chromosome CDS3824115 2529 - 0.553578
lpfE long polar fimbrial minor proteinRecName: Full=Protein LpfE; Flags: Precursor; chromosome CDS3822485 528 - 0.511364
lspA prolipoprotein signal peptidase (SPase II)RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome CDS56689 501 + 0.528942
marC putative MarC TransporterRecName: Full=UPF0056 inner membrane protein MarC; chromosome CDS1598190 666 + 0.534535
misL putative autotransported proteinSubName: Full=Putative autotransported protein; chromosome CDS3954761 2868 + 0.530683
orgA putative flagellar biosynthesis/type III secretory pathway proteinRecName: Full=Oxygen-regulated invasion protein OrgB; chromosome CDS3013788 681 - 0.450808
ppdB prepilin peptidase dependent protein BSubName: Full=Prepilin peptidase dependent protein B; chromosome CDS3156808 564 - 0.542553
ppdD prelipin peptidase dependent proteinSubName: Full=Prelipin peptidase dependent protein; chromosome CDS167714 438 - 0.53653
prgK cell invasion proteinRecName: Full=Lipoprotein PrgK; Flags: Precursor; chromosome CDS3014996 759 - 0.457181
safB putative fimbriae assembly chaparoneSubName: Full=Putative fimbriae assembly chaparone; chromosome CDS342829 714 + 0.488796
safC putative fimbriae usherSubName: Full=Putative fimbriae usher; chromosome CDS343566 2511 + 0.546794
secA preprotein translocase; secretion protein of IISP familyRecName: Full=Protein translocase subunit SecA; chromosome CDS158689 2706 + 0.538803
secB molecular chaperone in protein exportRecName: Full=Protein-export protein SecB; chromosome CDS3896036 468 - 0.510684
secD preprotein translocase, IISP family, part of the channelRecName: Full=Protein translocase subunit SecD; chromosome CDS462331 1848 + 0.544913
secE preprotein translocase IISP family, membrane subunitRecName: Full=Protein translocase subunit SecE; chromosome CDS4362017 384 + 0.554688
secF preprotein translocase, IISP family, membrane subunitRecName: Full=Protein-export membrane protein SecF; chromosome CDS464189 972 + 0.542181
secG preprotein translocase IISP family proteinSubName: Full=Preprotein translocase IISP family protein; chromosome CDS3461852 333 - 0.513514
secY preprotein translocase of IISP familyRecName: Full=Protein translocase subunit SecY; chromosome CDS3586027 1332 - 0.496997
shdA similar to the C-terminal region of AIDASubName: Full=C-terminal region of AIDA-like protein; chromosome CDS2627589 6120 - 0.580719
sipC cell invasion proteinRecName: Full=Cell invasion protein SipC; AltName: Full=Effector protein SipC; chromosome CDS3027857 1230 - 0.477236
smf putative protein involved in DNA uptakeSubName: Full=Uncharacterized protein; chromosome CDS3575680 1125 - 0.541333
sohB putative peptidaseSubName: Full=Putative peptidase; EC=3.4.21.-; chromosome CDS1813085 1047 - 0.540592
spaO surface presentation of antigensRecName: Full=Surface presentation of antigens protein SpaO; chromosome CDS3034335 912 - 0.527412
spaP surface presentation of antigensRecName: Full=Surface presentation of antigens protein SpaP; chromosome CDS3033671 675 - 0.414815
spaQ surface presentation of antigensRecName: Full=Surface presentation of antigens protein SpaQ; chromosome CDS3033385 261 - 0.467433
spaR surface presentation of antigensRecName: Full=Surface presentation of antigens protein SpaR; chromosome CDS3032590 792 - 0.493687
spaS surface presentation of antigensRecName: Full=Surface presentation of antigens protein SpaS; chromosome CDS3031533 1071 - 0.43324
sppA protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1372910 1857 - 0.557889
spy periplasmic protein related to spheroblast formationSubName: Full=Periplasmic protein related to spheroblast formation; chromosome CDS1388557 486 + 0.5
ssaC secretion system apparatus proteinSubName: Full=Secretion system apparatus protein; chromosome CDS1480402 1494 + 0.423025
ssaJ secretion system apparatus proteinRecName: Full=Secretion system apparatus lipoprotein SsaJ; Flags: Precursor; chromosome CDS1490277 750 + 0.42
ssaN secretion system apparatus proteinRecName: Full=Probable secretion system apparatus ATP synthase SsaN; EC=3.6.3.14; chromosome CDS1495691 1302 + 0.512289
ssaQ secretion system apparatus proteinRecName: Full=Secretion system apparatus protein SsaQ; chromosome CDS1497708 969 + 0.46646
ssaR secretion system apparatus proteinRecName: Full=Virulence protein YscR; chromosome CDS1498744 648 + 0.429012
ssaS secretion system apparatusRecName: Full=Secretion system apparatus protein SsaS; chromosome CDS1499388 267 + 0.419476
ssaT secretion system apparatus proteinRecName: Full=Secretion system apparatus protein SsaT; chromosome CDS1499655 780 + 0.389744
ssaU secretion system apparatus proteinRecName: Full=Secretion system apparatus protein SsaU; chromosome CDS1500431 1059 + 0.396601
ssaV secretion system apparatus proteinRecName: Full=Secretion system apparatus protein SsaV; chromosome CDS1493656 2046 + 0.465298
sseA secretion system effectorRecName: Full=Type III secretion system chaperone SseA; Short=TTSS chaperone SseA; AltName: Full=Secretion system effector A; chromosome CDS1483601 327 + 0.406728
stbA putative fimbriae; major subunitSubName: Full=Putative fimbriae major subunit; chromosome CDS384403 537 - 0.471136
stbB putative fimbriae; chaparoneSubName: Full=Putative fimbriae chaparone; chromosome CDS383580 762 - 0.454068
stbC putative fimbriae; usherSubName: Full=Putative fimbriae usher; chromosome CDS381035 2562 - 0.539422
stbE putative fimbriae; chaparoneSubName: Full=Putative fimbriae chaparone; chromosome CDS378981 759 - 0.476943
stcB putative periplasmic chaperone proteinSubName: Full=Putative periplasmic chaperone protein; chromosome CDS2246358 684 - 0.402047
stcC putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome CDS2243855 2490 - 0.457831
stdA putative fimbrial-like proteinSubName: Full=Putative fimbrial-like protein; chromosome CDS3191120 711 - 0.489451
stdB putative outer membrane usher proteinSubName: Full=Putative outer membrane usher protein; chromosome CDS3188511 2490 - 0.607229
stdC putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS3187727 744 - 0.58871
stfA putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS230657 561 + 0.520499
stfC putative fimbrial outer membrane usherSubName: Full=Putative fimbrial outer membrane usher; chromosome CDS231303 2658 + 0.549661
stfD putative periplasmic fimbrial chaperoneSubName: Full=Putative periplasmic fimbrial chaperone; chromosome CDS233978 753 + 0.541833
stfE putaive minor fimbrial subunitSubName: Full=Putative minor fimbrial subunit; chromosome CDS234749 513 + 0.559454
sthA putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4852095 684 - 0.461988
sthB putative fimbrial usher proteinSubName: Full=Putative fimbrial usher protein; chromosome CDS4849512 2538 - 0.472025
sthD putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS4848937 558 - 0.505376
sthE putative major fimbrial subunitSubName: Full=Putative major fimbrial subunit; chromosome CDS4847811 1086 - 0.524862
stiA putative fimbrial subunitSubName: Full=Putative fimbrial subunit; chromosome CDS208383 540 - 0.524074
stiB putative fimbrial chaparoneSubName: Full=Putative fimbrial chaparone; chromosome CDS207652 684 - 0.530702
stiC putativie fimbrial usherSubName: Full=Putative fimbrial usher; chromosome CDS205079 2547 - 0.553592
stiH putative fimbriaeSubName: Full=Putative fimbriae; chromosome CDS203991 1080 - 0.526852
stjB putative fimbrial usher proteinSubName: Full=Putative fimbrial usher protein; chromosome CDS4826467 2409 - 0.493566
stjC putative fimbrial chaparone proteinSubName: Full=Putative fimbrial chaparone protein; chromosome CDS4828889 708 - 0.456215
tatA component of Sec-independent protein secretion pathwayRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS4180504 255 + 0.454902
tatB component of Sec-independent protein secretion pathwayRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS4180762 549 + 0.542805
tatC component of sec-independent protein exportSubName: Full=90% identity to E. coli SEC-independent protein translocase protein (TATC); contains similarity to Pfam family PF00902 (MttB family), score=147.4, E=2.6e-40, N=1; SubName: Full=Component of sec-independent protein export; chromosome CDS4181313 780 + 0.502564
tolB tol protein required for outer membrane integrityRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS815964 1293 + 0.556845
tolC outer membrane channelSubName: Full=Outer membrane channel; chromosome CDS3348567 1476 + 0.520325
tolQ tol protein, membrane-spanning inner membrane proteinSubName: Full=Tol protein, membrane-spanning inner membrane protein; chromosome CDS813428 693 + 0.52381
tolR tol protein, role in outer membrane integritySubName: Full=Tol protein, role in outer membrane integrity; chromosome CDS814124 429 + 0.51049
yajC preprotein translocase IISP family, membrane subunitSubName: Full=Preprotein translocase IISP family, membrane subunit; chromosome CDS461971 333 + 0.51952
ybbJ putative membrane protein implicated in regulation of membrane protease activitySubName: Full=Putative membrane protein implicated in regulation of membrane protease activity; chromosome CDS560973 453 - 0.607064
ybeC putative Sec-independent protein secretion pathway componentRecName: Full=Probable Sec-independent protein translocase protein TatE; chromosome CDS694573 204 + 0.495098
ychE putative MarC family integral membrane proteinSubName: Full=Putative MarC family integral membrane protein; chromosome CDS1842004 648 - 0.506173
yggR putative protein transportSubName: Full=Uncharacterized protein; chromosome CDS3259946 981 - 0.572885
yidC putative preprotein translocase subunit YidCRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS4046425 1647 + 0.544019
yohG putative outer membrane efflux proteinSubName: Full=Putative outer membrane efflux protein; chromosome CDS2268829 1437 - 0.576896
yrfC putative inner membrane proteinSubName: Full=Putative inner membrane protein; chromosome CDS3645214 540 - 0.592593