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2024-04-30 06:40:21

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720

Number of genes found: 134

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Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
STM0307 homology to Shigella VirG proteinchromosome CDS350943 408 - 0.470588
STM0912 Fels-1 prophage protease subunits of ATP-dependent proteaseschromosome CDS983263 2187 + 0.576589
STM1033 Gifsy-2 prophage Clp protease-like proteinchromosome CDS1120666 2082 + 0.524976
STM2605 Gifsy-1 prophage proteinchromosome CDS2752336 1497 - 0.565798
STM2690 putative outer membrane efflux proteinchromosome CDS2839118 1410 + 0.568794
STM2706 Fels-2 prophage proteinchromosome CDS2853995 1575 - 0.524444
STM2787 tricarboxylic transport proteinchromosome CDS2935579 435 + 0.57931
STM3691 putative inner membrane proteinchromosome CDS3881228 4386 + 0.527816
STM4258 putative methyl-accepting chemotaxis proteinchromosome CDS4478486 1389 + 0.367891
STM4259 putative ABC exporter outer membrane component-like proteinchromosome CDS4479864 1320 + 0.367424
STM4575 putative outer membrane proteinchromosome CDS4830411 690 - 0.466667
STM4595 putative fimbrial chaparone proteinchromosome CDS4852849 546 - 0.501832
bcfA fimbrial subunitchromosome CDS24469 543 + 0.517495
bcfB fimbrial chaparonechromosome CDS25112 687 + 0.509461
bcfC fimbrial usherchromosome CDS25803 2622 + 0.544622
bcfD fimbrial subunitchromosome CDS28425 1008 + 0.500992
bcfE fimbrial subunitchromosome CDS29433 546 + 0.494505
bcfF fimbrial subunitchromosome CDS29994 519 + 0.55684
bcfG fimbrial chaparonechromosome CDS30478 732 + 0.539617
bigA putative surface-exposed virulence proteinchromosome CDS3629167 5862 + 0.573524
ccmD heme exporter protein Cchromosome CDS2351391 213 - 0.694836
ccmD heme exporter protein Cchromosome CDS4016319 213 - 0.694836
clpP proteolytic subunit of clpA-clpP ATP-dependent serine proteasechromosome CDS503210 624 + 0.512821
cpxP periplasmic repressor of cpx regulon by interaction with CpxAchromosome CDS4270595 501 + 0.506986
exbB uptake of enterochelinchromosome CDS3320009 735 - 0.556463
exbD uptake of enterochelinchromosome CDS3319577 426 - 0.507042
ffh 4.5S-RNP proteinchromosome CDS2817202 1362 - 0.549927
fimC periplasmic chaperone, required for type 1 fimbriaechromosome CDS605325 693 + 0.503608
fimD outer membrane usher proteinchromosome CDS606048 2613 + 0.556831
fimF putative fimbrial proteinchromosome CDS609692 519 + 0.55106
fimH minor fimbrial subunitchromosome CDS608675 1008 + 0.516865
fimI fimbrial protein internal segmentchromosome CDS604748 534 + 0.541198
flgM anti-FliA factorchromosome CDS1257046 294 - 0.517007
flgN flagellar biosynthesis proteinchromosome CDS1256619 423 - 0.536643
flhA flagellar biosynthesis proteinchromosome CDS2008212 2079 - 0.559885
flhB putative part of export apparatus for flagellar proteinschromosome CDS2010283 1152 - 0.559028
fliE putative flagellar hook-basal body proteinchromosome CDS2056008 315 - 0.568254
fliF basal-body MS (membrane and supramembrane)-ring and collar proteinchromosome CDS2056539 1683 + 0.571598
fliH flagellar biosynthesis proteinchromosome CDS2059202 708 + 0.60452
fliI flagellum-specific ATP synthasechromosome CDS2059909 1371 + 0.60248
fliJ flagellar FliJ proteinchromosome CDS2061301 444 + 0.513514
fliN flagellar biosynthesis proteinchromosome CDS2064536 414 + 0.548309
fliP flagellar biosynthesis proteinchromosome CDS2065326 738 + 0.536585
fliQ flagellar biosynthesis proteinchromosome CDS2066073 270 + 0.518519
fliR putative flagellar biosynthetic proteinchromosome CDS2066351 795 + 0.515723
fliS repressor of class 3a and 3b operons (RflA activity)chromosome CDS2050820 408 + 0.5
ftsY GTPase domain of cell division membrane proteinchromosome CDS3738746 1476 - 0.550135
hofB putative integral membrane proteinchromosome CDS166319 1386 - 0.554834
hofC putative component in type IV pilin biogenesischromosome CDS165127 1203 - 0.544472
hofQ putative transport proteinchromosome CDS3643213 1239 - 0.563358
hopD leader peptidase HopDchromosome CDS3596910 468 + 0.529915
invA invasion proteinchromosome CDS3038400 2058 - 0.455782
invC surface presentation of antigenschromosome CDS3036677 1296 - 0.542438
invG outer membrane invasion proteinchromosome CDS3041597 1689 - 0.46418
lepB leader peptidase (signal peptidase I), serine proteasechromosome CDS2725781 975 - 0.531282
lpfA long polar fimbriachromosome CDS3827449 537 - 0.463687
lpfB long polar fimbrial chaperonechromosome CDS3826666 699 - 0.447783
lpfC long polar fimbrial outer membrane usher proteinchromosome CDS3824115 2529 - 0.553578
lpfE long polar fimbrial minor proteinchromosome CDS3822485 528 - 0.511364
lspA prolipoprotein signal peptidase (SPase II)chromosome CDS56689 501 + 0.528942
marC putative MarC Transporterchromosome CDS1598190 666 + 0.534535
misL putative autotransported proteinchromosome CDS3954761 2868 + 0.530683
orgA putative flagellar biosynthesis/type III secretory pathway proteinchromosome CDS3013788 681 - 0.450808
ppdB prepilin peptidase dependent protein Bchromosome CDS3156808 564 - 0.542553
ppdD prelipin peptidase dependent proteinchromosome CDS167714 438 - 0.53653
prgK cell invasion proteinchromosome CDS3014996 759 - 0.457181
safB putative fimbriae assembly chaparonechromosome CDS342829 714 + 0.488796
safC putative fimbriae usherchromosome CDS343566 2511 + 0.546794
secA preprotein translocase; secretion protein of IISP familychromosome CDS158689 2706 + 0.538803
secB molecular chaperone in protein exportchromosome CDS3896036 468 - 0.510684
secD preprotein translocase, IISP family, part of the channelchromosome CDS462331 1848 + 0.544913
secE preprotein translocase IISP family, membrane subunitchromosome CDS4362017 384 + 0.554688
secF preprotein translocase, IISP family, membrane subunitchromosome CDS464189 972 + 0.542181
secG preprotein translocase IISP family proteinchromosome CDS3461852 333 - 0.513514
secY preprotein translocase of IISP familychromosome CDS3586027 1332 - 0.496997
shdA similar to the C-terminal region of AIDAchromosome CDS2627589 6120 - 0.580719
sipC cell invasion proteinchromosome CDS3027857 1230 - 0.477236
smf putative protein involved in DNA uptakechromosome CDS3575680 1125 - 0.541333
sohB putative peptidasechromosome CDS1813085 1047 - 0.540592
spaO surface presentation of antigenschromosome CDS3034335 912 - 0.527412
spaP surface presentation of antigenschromosome CDS3033671 675 - 0.414815
spaQ surface presentation of antigenschromosome CDS3033385 261 - 0.467433
spaR surface presentation of antigenschromosome CDS3032590 792 - 0.493687
spaS surface presentation of antigenschromosome CDS3031533 1071 - 0.43324
sppA protease IVchromosome CDS1372910 1857 - 0.557889
spy periplasmic protein related to spheroblast formationchromosome CDS1388557 486 + 0.5
ssaC secretion system apparatus proteinchromosome CDS1480402 1494 + 0.423025
ssaJ secretion system apparatus proteinchromosome CDS1490277 750 + 0.42
ssaN secretion system apparatus proteinchromosome CDS1495691 1302 + 0.512289
ssaQ secretion system apparatus proteinchromosome CDS1497708 969 + 0.46646
ssaR secretion system apparatus proteinchromosome CDS1498744 648 + 0.429012
ssaS secretion system apparatuschromosome CDS1499388 267 + 0.419476
ssaT secretion system apparatus proteinchromosome CDS1499655 780 + 0.389744
ssaU secretion system apparatus proteinchromosome CDS1500431 1059 + 0.396601
ssaV secretion system apparatus proteinchromosome CDS1493656 2046 + 0.465298
sseA secretion system effectorchromosome CDS1483601 327 + 0.406728
stbA putative fimbriae; major subunitchromosome CDS384403 537 - 0.471136
stbB putative fimbriae; chaparonechromosome CDS383580 762 - 0.454068
stbC putative fimbriae; usherchromosome CDS381035 2562 - 0.539422
stbE putative fimbriae; chaparonechromosome CDS378981 759 - 0.476943
stcB putative periplasmic chaperone proteinchromosome CDS2246358 684 - 0.402047
stcC putative outer membrane proteinchromosome CDS2243855 2490 - 0.457831
stdA putative fimbrial-like proteinchromosome CDS3191120 711 - 0.489451
stdB putative outer membrane usher proteinchromosome CDS3188511 2490 - 0.607229
stdC putative fimbrial chaparone proteinchromosome CDS3187727 744 - 0.58871
stfA putative fimbrial subunitchromosome CDS230657 561 + 0.520499
stfC putative fimbrial outer membrane usherchromosome CDS231303 2658 + 0.549661
stfD putative periplasmic fimbrial chaperonechromosome CDS233978 753 + 0.541833
stfE putaive minor fimbrial subunitchromosome CDS234749 513 + 0.559454
sthA putative fimbrial chaparone proteinchromosome CDS4852095 684 - 0.461988
sthB putative fimbrial usher proteinchromosome CDS4849512 2538 - 0.472025
sthD putative fimbrial subunitchromosome CDS4848937 558 - 0.505376
sthE putative major fimbrial subunitchromosome CDS4847811 1086 - 0.524862
stiA putative fimbrial subunitchromosome CDS208383 540 - 0.524074
stiB putative fimbrial chaparonechromosome CDS207652 684 - 0.530702
stiC putativie fimbrial usherchromosome CDS205079 2547 - 0.553592
stiH putative fimbriaechromosome CDS203991 1080 - 0.526852
stjB putative fimbrial usher proteinchromosome CDS4826467 2409 - 0.493566
stjC putative fimbrial chaparone proteinchromosome CDS4828889 708 - 0.456215
tatA component of Sec-independent protein secretion pathwaychromosome CDS4180504 255 + 0.454902
tatB component of Sec-independent protein secretion pathwaychromosome CDS4180762 549 + 0.542805
tatC component of sec-independent protein exportchromosome CDS4181313 780 + 0.502564
tolB tol protein required for outer membrane integritychromosome CDS815964 1293 + 0.556845
tolC outer membrane channelchromosome CDS3348567 1476 + 0.520325
tolQ tol protein, membrane-spanning inner membrane proteinchromosome CDS813428 693 + 0.52381
tolR tol protein, role in outer membrane integritychromosome CDS814124 429 + 0.51049
yajC preprotein translocase IISP family, membrane subunitchromosome CDS461971 333 + 0.51952
ybbJ putative membrane protein implicated in regulation of membrane protease activitychromosome CDS560973 453 - 0.607064
ybeC putative Sec-independent protein secretion pathway componentchromosome CDS694573 204 + 0.495098
ychE putative MarC family integral membrane proteinchromosome CDS1842004 648 - 0.506173
yggR putative protein transportchromosome CDS3259946 981 - 0.572885
yidC putative preprotein translocase subunit YidCchromosome CDS4046425 1647 + 0.544019
yohG putative outer membrane efflux proteinchromosome CDS2268829 1437 - 0.576896
yrfC putative inner membrane proteinchromosome CDS3645214 540 - 0.592593