Gene list
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COG category: Intracellular trafficking and secretion
Organism: Shigella flexneri 2a str. 301, 301
Number of genes found: 108
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella flexneri 2a str. 301, 301 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | SF3641 | orf, hypothetical protein | chromosome | CDS | 3746657 | 2973 | + | 0.515304 |
NA | SF1157 | orf, conserved hypothetical protein | chromosome | CDS | 1201042 | 2322 | + | 0.472007 |
NA | SF2409 | similar to fimbrial protein | chromosome | CDS | 2458261 | 525 | - | 0.455238 |
NA | SF2991 | outer membrane fluffing protein | chromosome | CDS | 3087470 | 3129 | + | 0.578779 |
NA | SF3992 | orf, conserved hypothetical protein | chromosome | CDS | 4120936 | 369 | + | 0.479675 |
NA | SF3914 | orf, conserved hypothetical protein | chromosome | CDS | 4035043 | 312 | + | 0.448718 |
NA | SF0944 | putative fimbrial-like protein | chromosome | CDS | 990458 | 564 | + | 0.473404 |
NA | SF0703 | head-tail preconnector gp5 | chromosome | CDS | 729846 | 1506 | + | 0.588977 |
NA | SF3008 | orf, conserved hypothetical protein | chromosome | CDS | 3103682 | 240 | - | 0.429167 |
NA | SF0463 | orf, partial conserved hypothetical protein | chromosome | CDS | 478218 | 501 | + | 0.431138 |
NA | SF3640 | orf, hypothetical protein | chromosome | CDS | 3744967 | 1149 | + | 0.492602 |
NA | SF2223 | putative enzyme | chromosome | CDS | 2250147 | 1071 | - | 0.556489 |
NA | SF0943 | putative fimbrial-like protein | chromosome | CDS | 989956 | 543 | + | 0.471455 |
NA | SF2224 | orf, partial conserved hypothetical protein | chromosome | CDS | 2251317 | 357 | - | 0.498599 |
NA | SF3007 | orf, conserved hypothetical protein | chromosome | CDS | 3103149 | 468 | - | 0.399573 |
NA | SF3511 | orf, partial conserved hypothetical protein | chromosome | CDS | 3603586 | 1149 | - | 0.442994 |
NA | SF2413 | orf, conserved hypothetical protein | chromosome | CDS | 2460544 | 786 | - | 0.529262 |
NA | SF3720 | similar to serine protease | chromosome | CDS | 3829720 | 759 | + | 0.397892 |
NA | SF1694 | possible enzyme | chromosome | CDS | 1725935 | 1257 | - | 0.518695 |
NA | SF3803 | putative secreted autotransporter toxin | chromosome | CDS | 3912667 | 507 | - | 0.441815 |
NA | SF3915 | orf, conserved hypothetical protein | chromosome | CDS | 4035358 | 516 | + | 0.554264 |
NA | SF3804 | similar to serine protease | chromosome | CDS | 3913711 | 990 | - | 0.339394 |
NA | SF0316 | orf, hypothetical protein | chromosome | CDS | 329654 | 624 | - | 0.453526 |
ccmD | SF2282 | heme exporter protein C | chromosome | CDS | 2317378 | 210 | - | 0.566667 |
clpP | SF0382 | ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 | chromosome | CDS | 391777 | 624 | + | 0.509615 |
exbB | SF3051 | enterochelin transporter (uptake) | chromosome | CDS | 3146691 | 735 | - | 0.526531 |
exbD | SF3050 | enterochelin transporter (uptake) | chromosome | CDS | 3146259 | 426 | - | 0.502347 |
ffh | SF2670 | GTP-binding export factor binds to signal sequence, GTP and RNA | chromosome | CDS | 2744974 | 1362 | - | 0.54185 |
fhiA | SF0278 | flagellar biosynthetic protein FlhA | chromosome | CDS | 295763 | 1740 | - | 0.584483 |
fimA | SF4208 | major type 1 subunit fimbrin (pilin) | chromosome | CDS | 4381556 | 549 | - | 0.510018 |
fimC | SF4206 | periplasmic chaperone | chromosome | CDS | 4380190 | 726 | - | 0.442149 |
fimF | SF4202 | minor fimbrial subunit, precursor polypeptide | chromosome | CDS | 4376171 | 531 | - | 0.489642 |
fimG | SF4201 | minor fimbrial subunit, precursor polypeptide | chromosome | CDS | 4375655 | 504 | - | 0.527778 |
fimI | SF4207 | fimbrial protein | chromosome | CDS | 4380952 | 639 | - | 0.499218 |
flgM | SF1077 | flagellar protein FlgM | chromosome | CDS | 1117596 | 294 | - | 0.530612 |
flgN | SF1076 | flagella synthesis protein FlgN | chromosome | CDS | 1117175 | 417 | - | 0.479616 |
flhB | SF1924 | putative part of export apparatus for flagellar proteins | chromosome | CDS | 1959784 | 1194 | - | 0.551089 |
fliE | SF1982 | flagellar hook-basal body 11K protein FliE | chromosome | CDS | 2012670 | 315 | - | 0.549206 |
fliH | SF1985 | flagellar assembly protein FliH | chromosome | CDS | 2015838 | 687 | + | 0.572052 |
fliI | SF1986 | flagellum-specific ATP synthase | chromosome | CDS | 2016524 | 1374 | + | 0.580058 |
fliJ | SF1987 | flagellar fliJ protein | chromosome | CDS | 2017916 | 345 | + | 0.498551 |
fliN | SF1991 | flagellar motor switch protein FliN | chromosome | CDS | 2020959 | 414 | + | 0.557971 |
fliP | SF1993 | flagellar biosynthesis | chromosome | CDS | 2021863 | 615 | + | 0.520325 |
fliQ | SF1994 | flagellar biosynthetic protein FliQ | chromosome | CDS | 2022487 | 270 | + | 0.511111 |
fliR | SF1995 | flagellar biosynthetic protein FliR | chromosome | CDS | 2022765 | 786 | + | 0.47201 |
fliS | SF1968 | flagellar protein FliS | chromosome | CDS | 2001449 | 411 | + | 0.481752 |
ftsY | SF3482 | cell division membrane protein | chromosome | CDS | 3573269 | 1497 | - | 0.53173 |
hofC | SF0103 | putative integral membrane protein | chromosome | CDS | 113024 | 1203 | - | 0.525353 |
hofQ | SF3409 | putative transport portein | chromosome | CDS | 3488679 | 1239 | - | 0.543987 |
hopD | SF3354 | putative leader peptidase | chromosome | CDS | 3438033 | 288 | + | 0.465278 |
icsA/virG | CP0182 | IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellul | pCP301 | CDS | 149644 | 3309 | + | 0.409791 |
lepB | SF2630 | leader peptidase (signal peptidase I) | chromosome | CDS | 2701550 | 975 | - | 0.52 |
lpfA | SF3807 | putative major fimbrial subunit | chromosome | CDS | 3916796 | 573 | - | 0.474695 |
lpfC | SF3723 | putative long polar fimbriae | chromosome | CDS | 3831823 | 2523 | + | 0.470075 |
lspA | SF0023 | prolipoprotein signal peptidase (SPase II) | chromosome | CDS | 24162 | 495 | + | 0.537374 |
mxiA | CP0147 | MxiA, innermembrane protein, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 126749 | 2061 | + | 0.342067 |
mxiD | CP0145 | MxiD, outermembrane protein of the secretin family, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 123950 | 1701 | + | 0.33157 |
mxiJ | CP0139 | MxiJ, lipoprotein, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 120503 | 726 | + | 0.342975 |
nfrB | SF0470 | bacteriophage N4 receptor, outer membrane protein | chromosome | CDS | 484845 | 2238 | - | 0.521448 |
pic | SF2973 | serine protease precurser | chromosome | CDS | 3067738 | 3213 | - | 0.511983 |
ppdD | SF0105 | prelipin peptidase dependent protein | chromosome | CDS | 115373 | 441 | - | 0.530612 |
prlA | SF3332 | putative ATPase subunit of translocase | chromosome | CDS | 3427150 | 1332 | - | 0.496997 |
secA | SF0095 | preprotein translocase; secretion protein | chromosome | CDS | 106897 | 2706 | + | 0.522542 |
secB | SF3648 | molecular chaperone in protein export | chromosome | CDS | 3756257 | 468 | - | 0.510684 |
secD | SF0345 | membrane protein | chromosome | CDS | 357145 | 1848 | + | 0.531926 |
secE | SF4054 | preprotein translocase | chromosome | CDS | 4197111 | 384 | + | 0.546875 |
secF | SF0346 | membrane protein | chromosome | CDS | 359003 | 972 | + | 0.515432 |
secG | SF3215 | protein translocase membrane component | chromosome | CDS | 3314357 | 333 | - | 0.501502 |
sepA | CP0070 | SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domain | pCP301 | CDS | 52745 | 4095 | - | 0.487424 |
sfmA | SF0461 | putative fimbrial-like protein | chromosome | CDS | 476700 | 576 | + | 0.4375 |
sfmC | SF0462 | putative chaperone | chromosome | CDS | 477495 | 693 | + | 0.431457 |
sigA | SF2968 | serine protease | chromosome | CDS | 3060438 | 3858 | + | 0.417574 |
smf | SF3317 | orf, conserved hypothetical protein | chromosome | CDS | 3415226 | 1125 | - | 0.510222 |
sohB | SF1274 | putative protease | chromosome | CDS | 1323616 | 1050 | + | 0.505714 |
spa24 | CP0153 | Spa24, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 132695 | 651 | + | 0.345622 |
spa29 | CP0155 | Spa29, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 133620 | 771 | + | 0.326848 |
spa33 | CP0152 | Spa33, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 131944 | 747 | + | 0.314592 |
spa40 | CP0156 | Spa40, component of the Mxi-Spa secretion machinery | pCP301 | CDS | 134397 | 1029 | + | 0.317784 |
spa47 | CP0149 | Spa47, component of the Mxi-Spa secretion machinery, putative ATPase | pCP301 | CDS | 129227 | 1293 | + | 0.392111 |
sppA | SF1457 | protease IV, a signal peptide peptidase | chromosome | CDS | 1492060 | 1857 | - | 0.519655 |
spy | SF1483 | periplasmic protein | chromosome | CDS | 1519826 | 486 | + | 0.50823 |
tolB | SF0557 | periplasmic protein | chromosome | CDS | 578224 | 1293 | - | 0.531322 |
tolC | SF3075 | outer membrane channel TolC | chromosome | CDS | 3171251 | 1482 | + | 0.513495 |
tolQ | SF0560 | inner membrane protein TolQ | chromosome | CDS | 581387 | 693 | - | 0.500722 |
tolR | SF0559 | putative inner membrane protein | chromosome | CDS | 580955 | 429 | - | 0.517483 |
yajC | SF0344 | orf, conserved hypothetical protein | chromosome | CDS | 356785 | 333 | + | 0.495495 |
ybbJ | SF0433 | orf, conserved hypothetical protein | chromosome | CDS | 450721 | 456 | - | 0.576754 |
ybeC | SF0654 | orf, conserved hypothetical protein | chromosome | CDS | 691371 | 204 | - | 0.5 |
ybgD | SF0578 | putative fimbrial-like protein | chromosome | CDS | 604259 | 567 | + | 0.47619 |
ybgP | SF0580 | putative chaperone | chromosome | CDS | 607350 | 732 | + | 0.494536 |
ybgQ | SF0579 | putative outer membrane protein | chromosome | CDS | 604876 | 2460 | + | 0.493902 |
ycbF | SF0945 | putative chaperone | chromosome | CDS | 990987 | 738 | + | 0.509485 |
ycbS | SF0941 | putative outer membrane protein | chromosome | CDS | 986284 | 2601 | + | 0.478278 |
ydeB | SF1565 | orf, conserved hypothetical protein | chromosome | CDS | 1596822 | 666 | + | 0.510511 |
yehB | SF2171 | putative outer membrane protein | chromosome | CDS | 2193959 | 2481 | - | 0.455865 |
yehD | SF2175 | putative fimbrial-like protein | chromosome | CDS | 2197986 | 525 | - | 0.405714 |
yejO | SF2276 | putative ATP-binding component of a transport system | chromosome | CDS | 2309590 | 2511 | - | 0.486659 |
yggR | SF2942 | putative transport protein | chromosome | CDS | 3032395 | 1026 | - | 0.540936 |
yhgN | SF3457 | orf, conserved hypothetical protein | chromosome | CDS | 3547719 | 594 | + | 0.501683 |
yidC | SF3759 | 60 KD inner-membrane protein | chromosome | CDS | 3866037 | 1647 | - | 0.535519 |
yigU | SF3916 | orf, conserved hypothetical protein | chromosome | CDS | 4035876 | 777 | + | 0.513514 |
yjaI | SF4074 | orf, conserved hypothetical protein | chromosome | CDS | 4220245 | 567 | - | 0.516755 |
yjcP | SF4140 | putative enzyme | chromosome | CDS | 4309590 | 1467 | - | 0.556919 |
ylcB | SF0473 | putative resistance protein | chromosome | CDS | 489504 | 1383 | + | 0.517715 |
yraI | SF3181 | putative chaperone | chromosome | CDS | 3278961 | 696 | + | 0.448276 |
yraK | SF3186 | putative fimbrial protein | chromosome | CDS | 3283548 | 1092 | + | 0.478938 |
yrfC | SF3412 | orf, conserved hypothetical protein | chromosome | CDS | 3490649 | 540 | - | 0.553704 |
ytfI | SF4271 | orf, conserved hypothetical protein | chromosome | CDS | 4449336 | 939 | - | 0.356762 |