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2024-05-02 01:12:43

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli K12, K-12

Number of genes found: 111

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli K12, K-12
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA b1505 putative outer membrane proteinchromosome CDS1586877 1149 - 0.445605
NA b2337 putative outer membrane proteinchromosome CDS2450378 897 - 0.532887
ccmD b2198 heme exporter protein Cchromosome CDS2293399 210 - 0.571429
clpP b0437 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5chromosome CDS455901 624 + 0.511218
cpxP b4484 periplasmic repressor of cpx regulon by interaction with CpxAchromosome CDS4103843 501 + 0.500998
cusC b0572 putative outer membrane protein involved in copper transportchromosome CDS594823 1374 + 0.512373
ecpD b0140 probable pilin chaperone similar to PapDchromosome CDS155461 741 - 0.443995
exbB b3006 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3149272 735 - 0.530612
exbD b3005 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3148840 426 - 0.502347
ffh b2610 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS2744456 1362 - 0.54185
fimA b4314 major type 1 subunit fimbrin (pilin)chromosome CDS4541138 549 + 0.517304
fimC b4316 periplasmic chaperone, required for type 1 fimbriaechromosome CDS4542327 726 + 0.444904
fimD b4317 outer membrane protein; export and assembly of type 1 fimbriae, interruptedchromosome CDS4543119 2637 + 0.486159
fimF b4318 fimbrial morphologychromosome CDS4545765 531 + 0.495292
fimG b4319 fimbrial morphologychromosome CDS4546308 504 + 0.52381
flgM b1071 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1129058 294 - 0.527211
flgN b1070 protein of flagellar biosynthesischromosome CDS1128637 417 - 0.482014
flhA b1879 flagellar biosynthesis; possible export of flagellar proteinschromosome CDS1960996 2079 - 0.548822
flhB b1880 putative part of export apparatus for flagellar proteinschromosome CDS1963067 1149 - 0.549173
fliE b1937 flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junctionchromosome CDS2010724 315 - 0.539683
fliF b1938 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinchromosome CDS2011253 1659 + 0.546112
fliI b1941 flagellum-specific ATP synthasechromosome CDS2014578 1374 + 0.585881
fliJ b1942 flagellar fliJ proteinchromosome CDS2015970 444 + 0.515766
fliN b1946 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its directionchromosome CDS2019112 414 + 0.550725
fliP b1948 flagellar biosynthesischromosome CDS2019893 738 + 0.531165
fliQ b1949 flagellar biosynthesischromosome CDS2020640 270 + 0.503704
fliR b1950 flagellar biosynthesischromosome CDS2020917 786 + 0.474555
fliS b1925 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)chromosome CDS2003327 411 + 0.498783
flu b2000 antigen 43, phase-variable bipartite outer membrane fluffing proteinchromosome CDS2069563 3120 + 0.582372
ftsY b3464 cell division membrane proteinchromosome CDS3600773 1494 - 0.534806
gspC b3324 putative export protein C for general secretion pathway (GSP)chromosome CDS3453600 816 + 0.42402
gspE b3326 putative export protein E for general secretion pathway (GSP); Type II traffic warden ATPasechromosome CDS3456361 1482 + 0.524966
gspF b3327 putative export protein F for general secretion pathway (GSP)chromosome CDS3457839 1197 + 0.510443
gspG b3328 putative export protein G for general secretion pathway (GSP); pilin-likechromosome CDS3459045 438 + 0.486301
gspH b3329 putative export protein H for general secretion pathway (GSP)chromosome CDS3459490 510 + 0.560784
gspJ b3331 putative export protein J for general secretion pathway (GSP)chromosome CDS3460366 588 + 0.503401
gspK b3332 putative export protein K for general secretion pathway (GSP)chromosome CDS3460946 984 + 0.502033
gspO b3335 bifunctional prepilin peptidase: leader peptidase; N-methyltransferase; part of general secretion pathway (GSP)chromosome CDS3463565 678 + 0.504425
hofB b0107 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakechromosome CDS115714 1386 - 0.534632
hofC b0106 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakechromosome CDS114522 1203 - 0.519534
hofQ b3391 putative transport porteinchromosome CDS3517487 1239 - 0.544794
htrE b0139 probable outer membrane porin protein involved in fimbrial assemblychromosome CDS152829 2598 - 0.43341
lepB b2568 leader peptidase (signal peptidase I)chromosome CDS2702357 975 - 0.52
lspA b0027 prolipoprotein signal peptidase (SPase II)chromosome CDS25207 495 + 0.535354
marC b1529 multiple antibiotic resistance proteinchromosome CDS1616267 666 - 0.510511
nfrB b0569 bacteriophage N4 receptor, subunit, inner membrane proteinchromosome CDS590164 2238 - 0.525022
ppdA b2826 prepilin peptidase dependent protein Achromosome CDS2961729 471 - 0.541401
ppdB b2825 prepilin peptidase dependent protein Bchromosome CDS2961175 564 - 0.52305
ppdD b0108 prelipin peptidase dependent proteinchromosome CDS117109 441 - 0.530612
prlA b3300 putative ATPase subunit of translocasechromosome CDS3440788 1332 - 0.496997
secA b0098 preprotein translocase; secretion proteinchromosome CDS108279 2706 + 0.524021
secB b3609 protein export; molecular chaperone; may bind to signel sequencechromosome CDS3781684 468 - 0.508547
secD b0408 protein secretion; membrane protein, part of the channelchromosome CDS426871 1848 + 0.531926
secE b3981 preprotein translocasechromosome CDS4175381 384 + 0.549479
secF b0409 protein secretion, membrane proteinchromosome CDS428729 972 + 0.516461
secG b3175 protein export-membrane proteinchromosome CDS3320195 333 - 0.495495
sfmA b0530 putative fimbrial-like proteinchromosome CDS557402 576 + 0.439236
sfmC b0531 putative chaperonechromosome CDS558197 693 + 0.425685
sfmD b0532 putative outer membrane protein, export functionchromosome CDS558920 2604 + 0.478111
sfmF b0534 putative fimbrial-like proteinchromosome CDS562553 516 + 0.5
smf b4473 orf, hypothetical proteinchromosome CDS3430458 1125 - 0.509333
sohB b1272 putative proteasechromosome CDS1327356 1050 + 0.505714
sppA b1766 protease IV, a signal peptide peptidasechromosome CDS1846861 1857 + 0.517501
spy b1743 periplasmic protein related to spheroblast formationchromosome CDS1823164 486 - 0.50823
tatA b3836 component of Sec-independent translocasechromosome CDS4019926 312 + 0.448718
tatB b3838 component of Sec-independent translocasechromosome CDS4020241 516 + 0.554264
tatC b3839 component of Sec-independent translocasechromosome CDS4020759 777 + 0.516088
tatE b0627 component of Sec-independent translocasechromosome CDS658170 204 + 0.5
tolB b0740 periplasmic protein involved in the tonb-independent uptake of group A colicinschromosome CDS776963 1293 + 0.531322
tolC b3035 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomeschromosome CDS3176131 1488 + 0.512769
tolQ b0737 inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicinschromosome CDS774376 693 + 0.50505
tolR b0738 putative inner membrane protein, involved in the tonB-independent uptake of group A colicinschromosome CDS775072 429 + 0.517483
yadK b0136 putative fimbrial proteinchromosome CDS151003 597 - 0.413735
yadN b0141 putative fimbrial-like proteinchromosome CDS156299 585 - 0.447863
yagZ b0293 orf, hypothetical proteinchromosome CDS309308 588 - 0.528912
yajC b0407 orf, hypothetical proteinchromosome CDS426511 333 + 0.495495
ybbJ b0488 orf, hypothetical proteinchromosome CDS513625 456 - 0.574561
ybgD b0719 putative fimbrial-like proteinchromosome CDS751452 567 - 0.467372
ybgP b0717 putative chaperonechromosome CDS748202 729 - 0.477366
ycbR b0939 putative fimbrial chaperonechromosome CDS997713 702 + 0.450142
ycbS b0940 putative outer membrane usher proteinchromosome CDS998439 2601 + 0.478662
ycbU b0942 putative fimbrial-like proteinchromosome CDS1002112 543 + 0.471455
ycgV b1202 putative adhesion and penetration proteinchromosome CDS1252308 2868 - 0.497908
ychE b1242 putative channel proteinchromosome CDS1297821 648 + 0.478395
ydeK b1510 orf, hypothetical proteinchromosome CDS1592133 3978 - 0.493213
ydeR b1503 putative fimbrial-like proteinchromosome CDS1585817 504 - 0.448413
ydeS b1504 putative fimbrial-like proteinchromosome CDS1586333 531 - 0.448211
ydhQ b1664 possible enzymechromosome CDS1742895 1257 - 0.513922
yehB b2109 putative outer membrane proteinchromosome CDS2186452 2481 - 0.455058
yehC b2110 putative chaperonechromosome CDS2188948 720 - 0.393056
yehD b2111 putative fimbrial-like proteinchromosome CDS2189702 543 - 0.405157
yejO b2190 putative ATP-binding component of a transport systemchromosome CDS2284412 2511 - 0.483473
yfaL b2233 putative ATP-binding component of a transport systemchromosome CDS2338439 3753 - 0.513722
yfcP b2333 putative fimbrial-like proteinchromosome CDS2448073 540 - 0.487037
yfcS b2336 putative chaperonechromosome CDS2449606 753 - 0.50996
yfcU b2338 putative outer membrane proteinchromosome CDS2451287 1737 - 0.510075
yghD b2968 putative secretion pathway proteinchromosome CDS3108612 537 - 0.532588
yghF b2970 putative general secretion pathway for protein export (GSP)chromosome CDS3110076 867 - 0.512111
ygiL b3043 putative fimbrial-like proteinchromosome CDS3183436 552 + 0.436594
yhcA b3215 putative chaperonechromosome CDS3360134 675 + 0.416296
yhcD b3216 putative outer membrane proteinchromosome CDS3360829 2382 + 0.45508
yhgN b3434 orf, hypothetical proteinchromosome CDS3573094 594 + 0.5
yidC b3705 60 KD inner-membrane proteinchromosome CDS3883099 1647 + 0.536733
yjcP b4080 putative enzymechromosome CDS4297587 1467 - 0.557601
yqiG b3046 putative membrane proteinchromosome CDS3185422 2466 + 0.422141
yraH b3142 putative fimbrial-like proteinchromosome CDS3285448 585 + 0.451282
yraI b3143 putative chaperonechromosome CDS3286112 696 + 0.442529
yraJ b3144 putative outer membrane proteinchromosome CDS3286836 2517 + 0.475963
yraK b3145 putative fimbrial proteinchromosome CDS3289363 1092 + 0.478938
yrfC b3394 orf, hypothetical proteinchromosome CDS3519455 540 - 0.553704
zraP b4002 Zn-binding periplasmic proteinchromosome CDS4199286 567 - 0.516755