Gene list
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COG category: Intracellular trafficking and secretion
Organism: Desulfotalea psychrophila LSv54, LSv54
Number of genes found: 100
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| Desulfotalea psychrophila LSv54, LSv54 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | DP2669 | probable flagellar motor switch protein (FliN) | SubName: Full=Probable flagellar motor switch protein (FliN); | chromosome | CDS | 3032807 | 372 | + | 0.459677 |
| NA | DP1528 | hypothetical membrane protein | SubName: Full=Hypothetical membrane protein; | chromosome | CDS | 1709791 | 852 | - | 0.467136 |
| NA | DPPB17 | probable conjugal transfer protein TrbF | SubName: Full=Probable conjugal transfer protein TrbF; | LSv54, large plasmid | CDS | 19288 | 666 | + | 0.394895 |
| NA | DP2687 | similar to regulator of flagellin synthesis, FlgM (partial length) | SubName: Full=Similar to regulator of flagellin synthesis, FlgM (Partial length); | chromosome | CDS | 3047724 | 282 | + | 0.400709 |
| NA | DP2551 | probable lipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 2905904 | 498 | - | 0.439759 |
| NA | DP2766 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3130769 | 510 | + | 0.498039 |
| NA | DP2673 | related to flagellar biosynthetic protein (FliR) | RecName: Full=Flagellar biosynthetic protein fliR; | chromosome | CDS | 3034739 | 783 | + | 0.494253 |
| NA | DP1537 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1718806 | 576 | - | 0.510417 |
| NA | DP2972 | probable biopolymer transport protein (ExbD2) | SubName: Full=Probable biopolymer transport protein (ExbD2); | chromosome | CDS | 3361998 | 405 | - | 0.516049 |
| NA | DP0109 | related to fimbrial assembly protein PilN | SubName: Full=Related to fimbrial assembly protein PilN; | chromosome | CDS | 118943 | 576 | + | 0.421875 |
| NA | DP1520 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1690485 | 10887 | + | 0.505557 |
| NA | DP2105 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2406773 | 7893 | + | 0.56189 |
| NA | DP2658 | related to flagellar assembly protein (FliH) | SubName: Full=Related to flagellar assembly protein (FliH); | chromosome | CDS | 3022333 | 873 | + | 0.460481 |
| NA | DP1658 | related to flagellar protein FliS | SubName: Full=Related to flagellar protein FliS; | chromosome | CDS | 1850502 | 615 | - | 0.508943 |
| NA | DP1459 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1628707 | 468 | + | 0.49359 |
| NA | DP1536 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1717903 | 858 | - | 0.488345 |
| NA | DP1452 | related to fimbrial protein [Precursor] | SubName: Full=Related to fimbrial protein [Precursor]; | chromosome | CDS | 1624720 | 429 | - | 0.447552 |
| NA | DP2656 | related to flagellar M-ring protein (FliF) | RecName: Full=Flagellar M-ring protein; | chromosome | CDS | 3019716 | 1638 | + | 0.484737 |
| NA | DP1533 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1715631 | 477 | - | 0.48847 |
| NA | DP1145 | probable preprotein translocase, SecY subunit | RecName: Full=Protein translocase subunit SecY; | chromosome | CDS | 1281868 | 1305 | + | 0.412261 |
| NA | DP0855 | conserved hypothetical membrane protein | RecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; | chromosome | CDS | 961442 | 1662 | + | 0.458484 |
| NA | DPPB56 | hypothetical protein | SubName: Full=Uncharacterized protein; | LSv54, large plasmid | CDS | 57820 | 14178 | - | 0.494992 |
| NA | DP0896 | probable twitching mobility protein | SubName: Full=Probable twitching mobility protein; | chromosome | CDS | 1008642 | 1170 | + | 0.480342 |
| NA | DP2660 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3024549 | 450 | + | 0.415556 |
| NA | DP1694 | probable twitching mobility protein | SubName: Full=Probable twitching mobility protein; | chromosome | CDS | 1898606 | 1083 | + | 0.45337 |
| NA | DP2675 | probable flagellar biosynthesis protein (FlhA) | SubName: Full=Probable flagellar biosynthesis protein (FlhA); | chromosome | CDS | 3036692 | 2109 | + | 0.490754 |
| NA | DP2659 | probable flagellum-specific ATP synthase (FliI) | SubName: Full=Probable flagellum-specific ATP synthase (FliI); | chromosome | CDS | 3023224 | 1305 | + | 0.516475 |
| NA | DP1469 | related to fimbrial biogenesis protein PilY1 | SubName: Full=Related to fimbrial biogenesis protein PilY1; | chromosome | CDS | 1636970 | 4923 | - | 0.484054 |
| NA | DP3017 | related to type IV prepilin leader peptidase | RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; | chromosome | CDS | 3415292 | 792 | + | 0.515152 |
| NA | DP1455 | related to prepilin peptidase dependent protein D [Precursor] | SubName: Full=Related to prepilin peptidase dependent protein D [Precursor]; | chromosome | CDS | 1625947 | 456 | - | 0.45614 |
| NA | DP0153 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 170034 | 1401 | + | 0.500357 |
| NA | DP2974 | related to transport protein TolQ | SubName: Full=Related to transport protein TolQ; | chromosome | CDS | 3362945 | 1392 | - | 0.549569 |
| NA | DPPB16 | probable conjugal transfer protein TrbL | SubName: Full=Probable conjugal transfer protein TrbL; | LSv54, large plasmid | CDS | 17813 | 1434 | + | 0.401674 |
| NA | DP1464 | related to prepilin peptidase dependent protein D [Precursor] | SubName: Full=Related to prepilin peptidase dependent protein D [Precursor]; | chromosome | CDS | 1634065 | 459 | - | 0.529412 |
| NA | DP2671 | probable flagellar biosynthetic protein (FliP) | SubName: Full=Probable flagellar biosynthetic protein (FliP); | chromosome | CDS | 3033515 | 783 | + | 0.454662 |
| NA | DP1638 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1827476 | 3393 | - | 0.442971 |
| NA | DP2412 | related to TolB protein [Precursor] | RecName: Full=Protein TolB; Flags: Precursor; | chromosome | CDS | 2754233 | 1317 | + | 0.477601 |
| NA | DPPB54 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | LSv54, large plasmid | CDS | 53294 | 1728 | - | 0.391782 |
| NA | DP1522 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1703021 | 738 | + | 0.410569 |
| NA | DP2672 | probable flagellar biosynthetic protein (FliQ) | SubName: Full=Probable flagellar biosynthetic protein (FliQ); | chromosome | CDS | 3034307 | 267 | + | 0.505618 |
| NA | DP2041 | related to fimbrial protein [Precursor] | SubName: Full=Related to fimbrial protein [Precursor]; | chromosome | CDS | 2322958 | 234 | - | 0.478632 |
| NA | DP2936 | probable cell division protein FtsY | RecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; | chromosome | CDS | 3322251 | 1413 | + | 0.500354 |
| NA | DPPB23 | probable TraG protein, N-terminal part | SubName: Full=Probable TraG protein, N-terminal part; | LSv54, large plasmid | CDS | 24978 | 1434 | + | 0.423989 |
| NA | DP0112 | related to fimbrial assembly protein PilQ [Precursor] | SubName: Full=Related to fimbrial assembly protein PilQ [Precursor]; | chromosome | CDS | 120693 | 1827 | + | 0.448276 |
| NA | DP2782 | probable type 4 fimbrial assembly protein (PilC) | SubName: Full=Probable type 4 fimbrial assembly protein (PilC); | chromosome | CDS | 3146056 | 1206 | + | 0.451078 |
| NA | DP0373 | related to outer membrane protein TolC [Precursor] | SubName: Full=Related to outer membrane protein TolC [Precursor]; | chromosome | CDS | 404239 | 1431 | - | 0.487771 |
| NA | DP0794 | probable SMF protein (DNA processing chain A) | SubName: Full=Probable SMF protein (DNA processing chain A); | chromosome | CDS | 893681 | 1074 | + | 0.501862 |
| NA | DP1468 | related to fimbrial biogenesis protein FimU | SubName: Full=Related to fimbrial biogenesis protein FimU; | chromosome | CDS | 1636464 | 522 | - | 0.488506 |
| NA | DP0806 | related to protein-export membrane protein SecD | SubName: Full=Related to protein-export membrane protein SecD; | chromosome | CDS | 907920 | 2604 | - | 0.470814 |
| NA | DP1535 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1716434 | 1443 | - | 0.496881 |
| NA | DP2674 | related to flagellar biosynthetic protein (FlhB) | SubName: Full=Related to flagellar biosynthetic protein (FlhB); | chromosome | CDS | 3035622 | 1068 | + | 0.494382 |
| NA | DP0099 | related to secretion protein SecG | SubName: Full=Related to secretion protein SecG; | chromosome | CDS | 109547 | 336 | - | 0.449405 |
| NA | DP2835 | related to outer membrane protein (OprM) | SubName: Full=Related to outer membrane protein (OprM); | chromosome | CDS | 3195547 | 1380 | + | 0.475362 |
| NA | DP1583 | related to capsid protein GPC of phage lambda | SubName: Full=Related to capsid protein GPC of phage lambda; | chromosome | CDS | 1767846 | 1302 | + | 0.568356 |
| NA | DP1462 | related to PilY1 protein | SubName: Full=Related to PilY1 protein; | chromosome | CDS | 1631133 | 2250 | + | 0.448889 |
| NA | DP2121 | related to outer membrane lipoprotein | SubName: Full=Related to outer membrane lipoprotein; | chromosome | CDS | 2434479 | 1431 | - | 0.531097 |
| NA | DPPB13 | probable conjugal transfer protein TrbC | SubName: Full=Probable conjugal transfer protein TrbC; | LSv54, large plasmid | CDS | 13830 | 327 | + | 0.382263 |
| NA | DP2107 | hypothetical outer membrane protein | SubName: Full=Hypothetical outer membrane protein; | chromosome | CDS | 2417631 | 1341 | + | 0.491424 |
| NA | DP2713 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3074358 | 624 | - | 0.512821 |
| NA | DP2655 | related to flagellar hook-basal body complex protein (FliE) | RecName: Full=Flagellar hook-basal body complex protein FliE; | chromosome | CDS | 3019350 | 297 | + | 0.481481 |
| NA | DPPB24 | probable TraG protein, C-terminal part | SubName: Full=Probable TraG protein, C-terminal part; | LSv54, large plasmid | CDS | 26445 | 417 | + | 0.455635 |
| NA | DP0107 | related to signal peptidase I | SubName: Full=Related to signal peptidase I; | chromosome | CDS | 116858 | 645 | - | 0.410853 |
| NA | DP2799 | probable signal recognition particle protein (SRP54) | RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; | chromosome | CDS | 3158808 | 1443 | + | 0.437976 |
| NA | DP1696 | probable outer membrane efflux pump channel protein [precursor] | SubName: Full=Probable outer membrane efflux pump channel protein [precursor]; | chromosome | CDS | 1900857 | 1401 | - | 0.48394 |
| NA | DP0512 | related to outer membrane (agglutination) protein | SubName: Full=Related to outer membrane (Agglutination) protein; | chromosome | CDS | 543586 | 1665 | + | 0.438438 |
| NA | DP2409 | related to biopolymer transport protein (TolQ) | SubName: Full=Related to biopolymer transport protein (TolQ); | chromosome | CDS | 2752069 | 699 | + | 0.473534 |
| NA | DP0115 | probable protein-export protein SecB | RecName: Full=Protein-export protein SecB; | chromosome | CDS | 125225 | 471 | - | 0.477707 |
| NA | DP1521 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1702031 | 972 | + | 0.441358 |
| NA | DP0108 | related to fimbrial assembly protein PilM | SubName: Full=Related to fimbrial assembly protein PilM; | chromosome | CDS | 117851 | 1065 | + | 0.428169 |
| NA | DP0523 | probable general secretion pathway protein E | SubName: Full=Probable general secretion pathway protein E; | chromosome | CDS | 570128 | 1524 | - | 0.510499 |
| NA | DP1456 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1627031 | 411 | + | 0.474453 |
| NA | DP0407 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 437864 | 1287 | + | 0.454545 |
| NA | DP1538 | related to pilus assembly protein pilin subunit | SubName: Full=Related to pilus assembly protein pilin subunit; | chromosome | CDS | 1719460 | 180 | - | 0.466667 |
| NA | DP2074 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2356042 | 7092 | - | 0.61379 |
| NA | DP2538 | probable ATP-dependent Clp protease, proteolytic subunit (ClpP) | RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; | chromosome | CDS | 2893478 | 642 | - | 0.436137 |
| NA | DPPB18 | probable conjugal transfer protein TrbG | SubName: Full=Probable conjugal transfer protein TrbG; | LSv54, large plasmid | CDS | 19963 | 987 | + | 0.389058 |
| NA | DPPB20 | probable conjugal transfer protein TrbI | SubName: Full=Probable conjugal transfer protein TrbI; | LSv54, large plasmid | CDS | 21388 | 1248 | + | 0.465545 |
| NA | DPPB55 | hypothetical protein | SubName: Full=Uncharacterized protein; | LSv54, large plasmid | CDS | 55523 | 2298 | - | 0.436466 |
| NA | DP1870 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2104148 | 462 | - | 0.426407 |
| NA | DP0110 | related to fimbrial assembly protein PilO | SubName: Full=Related to fimbrial assembly protein PilO; | chromosome | CDS | 119522 | 633 | + | 0.410742 |
| NA | DPPB25 | probable conjugal transfer protein TraF precursor | SubName: Full=Probable conjugal transfer protein TraF; | LSv54, large plasmid | CDS | 26858 | 450 | + | 0.426667 |
| NA | DP2750 | probable preprotein translocase SecA subunit | RecName: Full=Protein translocase subunit SecA; | chromosome | CDS | 3115407 | 2553 | - | 0.452801 |
| NA | DPPB12 | probable conjugal transfer protein TrbB | SubName: Full=Probable conjugal transfer protein TrbB; | LSv54, large plasmid | CDS | 12879 | 942 | + | 0.418259 |
| NA | DP2199 | related to proteinase IV | RecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; | chromosome | CDS | 2523172 | 1821 | + | 0.447007 |
| NA | DP2226 | probable type IV pilus assembly protein (TapB) | SubName: Full=Probable type IV pilus assembly protein (TapB); | chromosome | CDS | 2559093 | 2232 | - | 0.457885 |
| NA | DP1530 | probable secretory protein kinase | SubName: Full=Probable secretory protein kinase; | chromosome | CDS | 1711729 | 1386 | - | 0.465368 |
| NA | DP1111 | related to preprotein translocase secE subunit (partial length) | RecName: Full=Protein translocase subunit SecE; | chromosome | CDS | 1255809 | 255 | + | 0.376471 |
| NA | DP0909 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1022873 | 333 | + | 0.423423 |
| NA | DP2410 | related to biopolymer transport protein (TolR) | SubName: Full=Related to biopolymer transport protein (TolR); | chromosome | CDS | 2752861 | 315 | + | 0.473016 |
| NA | DP1237 | unknown protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1381183 | 1284 | - | 0.494548 |
| NA | DPPB14 | probable conjugal transfer protein TrbE | SubName: Full=Probable conjugal transfer protein TrbE; | LSv54, large plasmid | CDS | 14157 | 2715 | + | 0.41768 |
| NA | DP1529 | related to TadB | SubName: Full=Related to TadB; | chromosome | CDS | 1710745 | 954 | - | 0.399371 |
| NA | DP1457 | related to fimbrial biogenesis protein | SubName: Full=Related to fimbrial biogenesis protein; | chromosome | CDS | 1627445 | 561 | + | 0.488414 |
| NA | DP2973 | related to biopolymer transport protein (ExbB) | SubName: Full=Related to biopolymer transport protein (ExbB); | chromosome | CDS | 3362412 | 525 | - | 0.521905 |
| tatA | DP2621 | related to Sec-independent protein translocase protein TatA | RecName: Full=Sec-independent protein translocase protein TatA; | chromosome | CDS | 2979513 | 255 | + | 0.443137 |
| tatB | DP1479 | related to Sec-independent protein translocase protein TatB | RecName: Full=Sec-independent protein translocase protein TatB; | chromosome | CDS | 1651069 | 477 | - | 0.498952 |
| tatC | DP2718 | related to Sec-independent protein translocase protein TatC | RecName: Full=Sec-independent protein translocase protein TatC; | chromosome | CDS | 3080830 | 636 | - | 0.427673 |
| tatC | DP1763 | related to Sec-independent protein translocase protein TatC | RecName: Full=Sec-independent protein translocase protein TatC; | chromosome | CDS | 1986999 | 696 | - | 0.45977 |
| tatC | DP1478 | related to Sec-independent protein translocase protein TatC | RecName: Full=Sec-independent protein translocase protein TatC; | chromosome | CDS | 1650306 | 777 | - | 0.5148 |
| tatE | DP2620 | related to Sec-independent protein translocase protein TatE | RecName: Full=Sec-independent protein translocase protein TatA; | chromosome | CDS | 2979221 | 201 | + | 0.39801 |
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