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2024-05-03 03:02:30

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Escherichia coli O157:H7 EDL933, EDL933

Number of genes found: 171

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli O157:H7 EDL933, EDL933
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Z4189 putative integral membrane protein-component of typeIII secretion apparatuschromosome CDS3792310 666 - 0.345345
NA Z1536 putative usher proteinchromosome CDS1427727 2523 - 0.512485
NA Z4504 partial putative fimbrial proteinchromosome CDS4101655 492 + 0.48374
NA Z2691 possible enzymechromosome CDS2419778 1257 - 0.516309
NA Z5138 chromosome CDS4688209 324 - 0.314815
NA Z1886 putative capsid protein of prophage CP-933Xchromosome CDS1718285 1320 + 0.607576
NA Z3596 putative minor fimbrial subunitchromosome CDS3246491 522 - 0.44636
NA Z4194 type III secretion apparatus proteinchromosome CDS3795212 1320 - 0.446212
NA Z1651 putative adhesinchromosome CDS1527754 3018 + 0.567594
NA Z5029 putative adhesinchromosome CDS4588091 4767 + 0.503461
NA Z0402 putative beta-barrel outer membrane proteinchromosome CDS379670 4050 + 0.495309
NA Z4187 type III secretion apparatus proteinchromosome CDS3791585 453 - 0.403974
NA Z2322 putative outer membrane proteinchromosome CDS2098645 2460 - 0.544309
NA Z4971 putative major fimbrial subunitchromosome CDS4524740 537 - 0.463687
NA Z2384 unknown protein encoded within prophage CP-933Rchromosome CDS2146893 519 - 0.481696
NA Z4965 putative fimbrial subunitchromosome CDS4519782 531 - 0.512241
NA Z2204 putative fimbrial-like proteinchromosome CDS1978387 531 + 0.455744
NA Z2112 putative ClpP-like protease encoded within prophage CP-933Ochromosome CDS1897625 798 - 0.526316
NA Z0024 putative type-1 fimbrial proteinchromosome CDS22495 534 - 0.391386
NA Z4969 putative fimbrial chaperonechromosome CDS4523989 699 - 0.424893
NA Z4799 putative DNA processing proteinchromosome CDS4358731 1296 - 0.503086
NA Z1537 putative chaperonechromosome CDS1430302 723 - 0.457815
NA Z1211 putative adhesinchromosome CDS1132148 3018 + 0.567594
NA Z1543 putative outer membrane transporter of ShlA/HecA/FhaA exoprotein familychromosome CDS1437607 1620 + 0.424691
NA Z1972 partial putative adhesion proteinchromosome CDS1791522 1644 - 0.49635
NA Z4195 type III secretion apparatus proteinchromosome CDS3796536 2061 - 0.373605
NA Z4186 putative integral membrane protein-component of typeIII secretion apparatuschromosome CDS3791270 237 - 0.421941
NA Z2134 putative head-tail preconnector protein of prophage CP-933Ochromosome CDS1912872 1506 + 0.604914
NA Z0469 putative structural protein (partial)chromosome CDS451257 2943 + 0.465851
NA Z0022 putative usher proteinchromosome CDS19299 2451 - 0.410037
NA Z2102 unknown protein encoded within prophage CP-933Ochromosome CDS1891086 567 + 0.449735
NA Z2201 putative fimbrial chaperone proteinchromosome CDS1974961 720 + 0.459722
NA Z2200 putative major fimbrial subunitchromosome CDS1974046 564 + 0.466312
NA Z0986 unknown protein encoded by prophage CP-933Kchromosome CDS927313 993 + 0.442095
NA Z4185 putative integral membrane protein-component of type III secretion apparatuschromosome CDS3790140 1122 - 0.33066
NA Z1640 chromosome CDS1517107 1047 + 0.526266
NA Z5225 putative major fimbrial subuitchromosome CDS4772963 603 - 0.44942
NA Z0608 putative outer membrane export proteinchromosome CDS579898 1356 + 0.515487
NA Z3135 putative invasinchromosome CDS2789871 7983 + 0.500438
NA Z0390 chromosome CDS368429 1110 - 0.425225
NA Z5220 putative fimbrial proteinchromosome CDS4767426 1083 - 0.437673
NA Z1534 putative chaperonechromosome CDS1425691 690 - 0.462319
NA Z0615 putative RTX family exoproteinchromosome CDS585949 15567 + 0.610779
NA Z3600 putative fimbrial usherchromosome CDS3248768 2640 - 0.544318
NA Z5222 putative fimbrial usherchromosome CDS4769618 2535 - 0.485207
NA Z0023 putative chaperone proteinchromosome CDS21762 684 - 0.365497
NA Z2506 partial putative outer membrane channel proteinchromosome CDS2228981 1029 - 0.541302
NA Z4180 putative lipoprotein of type III secretion apparatuschromosome CDS3786504 735 - 0.364626
NA Z2205 putative fimbrial-like proteinchromosome CDS1978930 504 + 0.446429
NA Z5932 putative invasinchromosome CDS5446463 5103 - 0.492063
NA Z1542 putative member of ShlA/HecA/FhaA exoprotein familychromosome CDS1433706 3813 + 0.492788
NA Z4197 type III secretion apparatus proteinchromosome CDS3799739 1704 - 0.387911
NA Z3097 putative peptidase encoded within prophage CP-933Uchromosome CDS2762762 960 - 0.526042
NA Z1291 chromosome CDS1221650 477 + 0.48847
NA Z4190 typeIII secretion apparatus proteinchromosome CDS3792965 987 - 0.356636
NA Z0639 chromosome CDS605968 1017 - 0.485742
NA Z2361 putative capsid assembly protein of prophage CP-933Rchromosome CDS2132439 1506 - 0.604914
NA Z1292 putative fimbrial-like proteinchromosome CDS1222086 564 + 0.475177
NA Z2323 chromosome CDS2101324 2721 - 0.494671
NA Z4188 type III secretion apparatus proteinchromosome CDS3792039 261 - 0.383142
NA Z1200 chromosome CDS1121500 1047 + 0.526266
NA Z0967 putative protease encoded in prophage CP-933Kchromosome CDS909701 2028 + 0.5143
NA Z2504 partial putative outer membrane channel proteinchromosome CDS2228635 438 - 0.538813
NA Z1538 putative pilin subunitchromosome CDS1431089 561 - 0.511586
NA Z0609 chromosome CDS581356 4386 + 0.587551
NA Z5224 putative fimbrial chaperonechromosome CDS4772476 384 - 0.382812
NA Z2196 putative ATP-binding component of a transport system and adhesin proteinchromosome CDS1970492 1401 + 0.528908
NA Z2203 putative fimbrial usher proteinchromosome CDS1975722 2652 + 0.44457
NA Z3271 chromosome CDS2930677 348 + 0.408046
ccmD Z3455 heme exporter protein Cchromosome CDS3100199 210 - 0.571429
clpP Z0542 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5chromosome CDS522731 624 + 0.503205
eae Z5110 intimin adherence proteinchromosome CDS4665441 2805 - 0.426025
eaeH Z0375 putative adhesinchromosome CDS353934 4254 + 0.524212
ecpD Z0151 putative fimbrial chaperone proteinchromosome CDS159884 732 - 0.483607
escC Z5126 escCchromosome CDS4680359 1539 + 0.373619
escJ Z5124 escJchromosome CDS4679326 573 + 0.368237
escN Z5119 escNchromosome CDS4674677 1341 - 0.443699
escR Z5135 escRchromosome CDS4686315 654 - 0.330275
escS Z5134 escSchromosome CDS4686046 270 - 0.385185
escT Z5133 escTchromosome CDS4685270 777 - 0.33462
escU Z5132 escUchromosome CDS4684240 1038 - 0.340077
escV Z5120 escVchromosome CDS4676001 2028 - 0.405325
exbB Z4359 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3958920 735 - 0.531973
exbD Z4358 uptake of enterochelin; tonB-dependent uptake of B colicinschromosome CDS3958488 426 - 0.5
ffh Z3904 GTP-binding export factor binds to signal sequence, GTP and RNAchromosome CDS3536291 1362 - 0.54185
fhiA Z0290 flagellar biosynthesischromosome CDS286245 1740 - 0.585057
fimA Z5912 major type 1 subunit fimbrin (pilin)chromosome CDS5428009 549 + 0.517304
fimC Z5914 periplasmic chaperone, required for type 1 fimbriaechromosome CDS5429198 726 + 0.444904
fimD Z5915 outer membrane protein; export and assembly of type 1 fimbriae, interruptedchromosome CDS5429990 2637 + 0.483125
fimF Z5916 fimbrial morphologychromosome CDS5432636 531 + 0.493409
fimG Z5917 fimbrial morphologychromosome CDS5433179 504 + 0.525794
fimI Z5913 fimbrial proteinchromosome CDS5428514 648 + 0.496914
flgN Z1708 protein of flagellar biosynthesischromosome CDS1573644 417 - 0.479616
flhA Z2932 flagellar biosynthesis; possible export of flagellar proteinschromosome CDS2640113 2079 - 0.545455
flhB Z2934 putative part of export apparatus for flagellar proteinschromosome CDS2642184 1149 - 0.547433
fliE Z3027 flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junctionchromosome CDS2712396 315 - 0.536508
fliF Z3028 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar proteinchromosome CDS2712925 1659 + 0.545509
fliH Z3030 flagellar biosynthesis; export of flagellar proteins?chromosome CDS2715543 708 + 0.572034
fliI Z3031 flagellum-specific ATP synthasechromosome CDS2716195 1491 + 0.585513
fliJ Z3032 flagellar fliJ proteinchromosome CDS2717704 444 + 0.529279
fliN Z3036 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its directionchromosome CDS2720847 414 + 0.550725
fliP Z3038 flagellar biosynthesischromosome CDS2721628 738 + 0.533875
fliQ Z3039 flagellar biosynthesischromosome CDS2722375 270 + 0.503704
fliR Z3040 flagellar biosynthesischromosome CDS2722652 786 + 0.477099
fliS Z3015 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)chromosome CDS2703036 411 + 0.491484
ftsY Z4838 cell division membrane proteinchromosome CDS4389218 1497 - 0.53507
hofB Z0117 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakechromosome CDS120204 1386 - 0.540404
hofC Z0116 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptakechromosome CDS119012 1203 - 0.522028
hofQ Z4744 putative transport porteinchromosome CDS4298883 1239 - 0.54318
hopD Z4693 putative leader peptidasechromosome CDS4255883 468 + 0.478632
htrE Z0150 putative fimbrial usher proteinchromosome CDS157242 2499 - 0.488595
lepB Z3850 leader peptidase (signal peptidase I)chromosome CDS3494559 975 - 0.516923
lspA Z0031 prolipoprotein signal peptidase (SPase II)chromosome CDS29619 495 + 0.533333
nfrB Z0699 bacteriophage N4 receptor, outer membrane proteinchromosome CDS661792 2238 - 0.524129
ppdA Z4143 prepilin peptidase dependent protein Achromosome CDS3753405 471 - 0.535032
ppdB Z4142 prepilin peptidase dependent protein Bchromosome CDS3752851 564 - 0.515957
ppdD Z0118 prelipin peptidase dependent proteinchromosome CDS121599 441 - 0.53288
prlA Z4670 putative ATPase subunit of translocasechromosome CDS4245000 1332 - 0.496997
secA Z0108 preprotein translocase; secretion proteinchromosome CDS112885 2706 + 0.521803
secB Z5036 protein export; molecular chaperone; may bind to signel sequencechromosome CDS4599475 468 - 0.510684
secD Z0507 protein secretion; membrane protein, part of the channelchromosome CDS491278 1848 + 0.532468
secE Z5554 preprotein translocasechromosome CDS5055121 384 + 0.546875
secF Z0508 protein secretion, membrane proteinchromosome CDS493136 972 + 0.51749
secG Z4537 protein export-membrane proteinchromosome CDS4131887 333 - 0.504505
sfmA Z0686 putative fimbrial-like proteinchromosome CDS650325 576 + 0.439236
sfmC Z0688 putative chaperonechromosome CDS651120 693 + 0.421356
sfmD Z0689 putative outer membrane protein, export functionchromosome CDS651843 2610 + 0.477012
sfmF Z0691 putative fimbrial proteinchromosome CDS655483 516 + 0.496124
smf Z4656 chromosome CDS4234670 1125 - 0.508444
sohB Z2538 putative proteasechromosome CDS2256088 1050 - 0.504762
sppA Z2799 protease IV, a signal peptide peptidasechromosome CDS2523552 1857 + 0.519655
spy Z2775 periplasmic protein related to spheroblast formationchromosome CDS2499855 486 - 0.506173
tatA Z5358 twin arginine translocation protein; sec-independent protein exportchromosome CDS4886976 312 + 0.445513
tatB Z5359 chromosome CDS4887369 438 + 0.557078
tatC Z5360 putative integral membrane proteinchromosome CDS4887809 777 + 0.517375
tolB Z0908 periplasmic protein involved in the tonb-independent uptake of group A colicinschromosome CDS863819 1293 + 0.533643
tolC Z4392 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomeschromosome CDS3991518 1488 + 0.515457
tolQ Z0905 inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicinschromosome CDS861313 693 + 0.502164
tolR Z0906 putative inner membrane protein, involved in the tonB-independent uptake of group A colicinschromosome CDS862009 429 + 0.515152
yadN Z0152 putative fimbrial proteinchromosome CDS160696 606 - 0.458746
yagZ Z0360 orf, hypothetical proteinchromosome CDS342493 588 - 0.528912
yahO Z0425 orf, hypothetical proteinchromosome CDS403185 276 + 0.387681
yajC Z0506 orf, hypothetical proteinchromosome CDS490918 333 + 0.495495
ybbJ Z0641 orf, hypothetical proteinchromosome CDS607892 459 - 0.579521
ybeC Z0772 orf, hypothetical proteinchromosome CDS740084 204 + 0.5
ybgD Z0872 putative fimbriae structural proteinchromosome CDS830531 567 - 0.45679
ybgP Z0869 putative chaperonechromosome CDS827276 732 - 0.525956
ybgQ Z0871 putative outer membrane usher proteinchromosome CDS828310 2163 - 0.507166
ycbF Z1293 putative chaperonechromosome CDS1222615 570 + 0.515789
ycbQ Z1286 putative fimbrial-like proteinchromosome CDS1216554 549 + 0.420765
ycbR Z1287 putative chaperonechromosome CDS1217185 702 + 0.457265
ydeB Z2172 orf, hypothetical proteinchromosome CDS1945151 666 + 0.503003
ydeK Z2195 orf, hypothetical proteinchromosome CDS1966464 4032 + 0.492808
yehB Z3277 putative outer membrane proteinchromosome CDS2934385 2481 - 0.448206
yehC Z3278 putative chaperone proteinchromosome CDS2936881 723 - 0.394191
yehD Z3279 putative fimbrial-like proteinchromosome CDS2937643 543 - 0.38674
yejO Z3449 putative ATP-binding component of a transport systemchromosome CDS3092587 2511 - 0.48626
yfcS Z3599 putative fimbrial chaperonechromosome CDS3247987 759 - 0.527009
yggR Z4295 putative protein transportchromosome CDS3902918 1026 - 0.546784
yhgN Z4798 orf, hypothetical proteinchromosome CDS4358092 594 + 0.503367
yidC Z5197 60 KD inner-membrane proteinchromosome CDS4740292 1647 + 0.536733
yiiO Z5458 chromosome CDS4974541 504 + 0.498016
yjaI Z5578 orf, hypothetical proteinchromosome CDS5078834 567 - 0.516755
yjcP Z5680 putative enzymechromosome CDS5182234 1467 - 0.558282
ylcB Z0711 putative resistance proteinchromosome CDS678042 1383 + 0.5141
yohG Z3387 putative outer membrane proteinchromosome CDS3027503 1197 - 0.553885
ypjA Z3948 putative ATP-binding component of a transport systemchromosome CDS3567614 4587 - 0.493569
yraH Z4498 putative fimbrial-like proteinchromosome CDS4096182 585 + 0.459829
yraI Z4499 putative chaperonechromosome CDS4096846 696 + 0.441092
yraJ Z4500 putative outer membrane proteinchromosome CDS4097570 2517 + 0.474374
yrfC Z4748 orf, hypothetical proteinchromosome CDS4300851 540 - 0.546296