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2024-04-29 00:41:18

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Colwellia psychrerythraea 34H, 34H; BAA-681

Number of genes found: 119

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Colwellia psychrerythraea 34H, 34H; BAA-681
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA CPS_2573 amidohydrolase family proteinchromosome CDS2675852 3216 + 0.408271
NA CPS_4254 lysM domain proteinchromosome CDS4482947 1575 - 0.382222
NA CPS_3919 putative type IV pilus biogenesis proteinchromosome CDS4093604 627 + 0.371611
NA CPS_2413 SEC-C motif domain proteinchromosome CDS2524573 960 + 0.359375
NA CPS_0363 hypothetical proteinchromosome CDS370023 1362 - 0.350954
NA CPS_0444 putative nickel-containing superoxide dismutasechromosome CDS443273 504 + 0.367063
NA CPS_1283 putative membrane proteinchromosome CDS1321233 1524 - 0.447507
NA CPS_0022 putative DNA processing protein DprAchromosome CDS26651 1152 + 0.40191
NA CPS_4444 type IV pilinchromosome CDS4681376 483 + 0.401656
NA CPS_1751 conserved hypothetical proteinchromosome CDS1796529 459 + 0.383442
NA CPS_1844 conserved hypothetical protein TIGR00427chromosome CDS1894552 624 - 0.387821
NA CPS_2960 hypothetical proteinchromosome CDS3101732 408 - 0.328431
NA CPS_1214 conserved hypothetical proteinchromosome CDS1246661 969 + 0.413829
NA CPS_0471 type IV pilus biogenesis protein PilQchromosome CDS472626 2121 + 0.361622
NA CPS_2304 putative type IV pilus biogenesis protein pilZchromosome CDS2403397 327 + 0.400612
NA CPS_0790 hypothetical proteinchromosome CDS810810 561 - 0.413547
NA CPS_4326 outer membrane efflux proteinchromosome CDS4553279 1404 - 0.412393
NA CPS_2549 hypothetical proteinchromosome CDS2653938 459 + 0.359477
NA CPS_4571 hypothetical proteinchromosome CDS4824159 489 - 0.353783
NA CPS_2430 VCBS repeat proteinchromosome CDS2543584 11277 + 0.418196
NA CPS_0445 hypothetical proteinchromosome CDS443799 297 + 0.380471
NA CPS_2386 efflux transporter, RND family, outer membrane lipoprotein subunitchromosome CDS2499511 1440 - 0.363194
NA CPS_3755 MotA/TolQ/ExbB proton channel familychromosome CDS3914136 1350 - 0.367407
NA CPS_4212 putative general secretion pathway protein Achromosome CDS4433359 1692 - 0.379433
NA CPS_1630 hypothetical proteinchromosome CDS1681193 942 - 0.390658
NA CPS_3226 hypothetical proteinchromosome CDS3354150 2196 - 0.414845
NA CPS_3508 putative transcriptional regulatorchromosome CDS3644473 2139 - 0.355774
NA CPS_4646 RND efflux system, outer membrane lipoprotein, NodT familychromosome CDS4906295 1395 + 0.405018
NA CPS_5029 putative general secretion pathway protein Achromosome CDS5345209 1041 + 0.3439
NA CPS_3020 putative membrane proteinchromosome CDS3160468 651 - 0.333333
NA CPS_1507 putative flagellar hook-length control proteinchromosome CDS1549536 1983 + 0.386283
NA CPS_0883 hypothetical proteinchromosome CDS891860 1362 - 0.350954
NA CPS_1219 putative type IV pilus biogenesis proteinchromosome CDS1252900 543 - 0.39779
NA CPS_1615 hypothetical proteinchromosome CDS1663434 564 - 0.413121
NA CPS_5050 inner membrane protein, 60 kDachromosome CDS5370275 1632 - 0.362132
NA CPS_1839 outer membrane efflux proteinchromosome CDS1889605 1401 + 0.371877
NA CPS_2575 conserved hypothetical proteinchromosome CDS2679634 333 + 0.36036
NA CPS_2869 putative lipoproteinchromosome CDS3000862 1239 - 0.410815
NA CPS_1506 flagellar protein FliJchromosome CDS1548916 444 + 0.391892
NA CPS_4856 putative cation efflux proteinchromosome CDS5147678 1491 + 0.412475
NA CPS_1216 hypothetical proteinchromosome CDS1248219 3768 + 0.403662
NA CPS_0016 hypothetical proteinchromosome CDS17757 2940 - 0.401701
NA CPS_1104 dipeptidyl peptidase IVchromosome CDS1123943 2259 - 0.382027
NA CPS_1957 putative RND efflux system proteinchromosome CDS2019519 1335 + 0.413483
NA CPS_1195 intimin/invasin family proteinchromosome CDS1223606 2637 + 0.409177
NA CPS_4836 conserved hypothetical proteinchromosome CDS5127323 459 - 0.372549
NA CPS_3975 MotA/TolQ/ExbB proton channel family proteinchromosome CDS4168599 1374 - 0.402475
ccmD CPS_1031 heme exporter protein CcmDchromosome CDS1058039 234 - 0.371795
clpP CPS_3785 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS3950580 663 - 0.368024
exbB1 CPS_1853 biopolymer transport exbB proteinchromosome CDS1903603 612 - 0.400327
exbB2 CPS_3754 biopolymer transport exbB proteinchromosome CDS3913612 525 - 0.434286
exbB3 CPS_3974 biopolymer transport exbB proteinchromosome CDS4168068 528 - 0.422348
exbD1 CPS_1852 biopolymer transport exbD proteinchromosome CDS1903182 411 - 0.347932
exbD2 CPS_3753 biopolymer transport exbD proteinchromosome CDS3913198 402 - 0.385572
exbD3 CPS_3973 biopolymer transport exbD proteinchromosome CDS4167581 411 - 0.396594
ffh CPS_4073 signal recognition particle proteinchromosome CDS4280365 1392 - 0.408764
flgM CPS_1472 negative regulator of flagellin synthesis FlgMchromosome CDS1513695 309 - 0.368932
flhA CPS_1516 flagellar biosynthesis protein FlhAchromosome CDS1557742 2103 + 0.398003
flhB CPS_1515 flagellar biosynthetic protein FlhBchromosome CDS1556465 1131 + 0.390805
fliE CPS_1501 flagellar hook-basal body complex protein FliEchromosome CDS1543263 363 + 0.393939
fliF CPS_1502 flagellar M-ring protein FliFchromosome CDS1543859 1692 + 0.416667
fliH CPS_1504 flagellar assembly protein FliHchromosome CDS1546634 789 + 0.413181
fliI CPS_1505 flagellum-specific ATP synthase FliIchromosome CDS1547491 1350 + 0.42
fliN CPS_1510 flagellar motor switch protein FliNchromosome CDS1553393 396 + 0.378788
fliP CPS_1512 flagellar biosynthetic protein FliPchromosome CDS1554553 759 + 0.383399
fliQ CPS_1513 flagellar biosynthetic protein FliQchromosome CDS1555375 270 + 0.4
fliR CPS_1514 flagellar biosynthetic protein FliRchromosome CDS1555682 783 + 0.389527
fliS CPS_1496 flagellar protein FliSchromosome CDS1537508 399 - 0.37594
ftsY CPS_0157 signal recognition particle-docking protein FtsYchromosome CDS167160 1446 + 0.401107
gspC CPS_4592 general secretion pathway protein Cchromosome CDS4846614 951 - 0.389064
gspD CPS_4591 general secretion pathway protein Dchromosome CDS4844410 2094 - 0.401624
gspE CPS_4590 general secretion pathway protein Echromosome CDS4842881 1530 - 0.41634
gspF CPS_4589 general secretion pathway protein Fchromosome CDS4841581 1242 - 0.413849
gspG CPS_4588 general secretion pathway protein Gchromosome CDS4841091 432 - 0.402778
gspH CPS_4587 general secretion pathway protein Hchromosome CDS4840340 621 - 0.409018
gspI CPS_4586 general secretion pathway protein Ichromosome CDS4839967 384 - 0.414062
gspJ CPS_4585 general secretion pathway protein Jchromosome CDS4839308 660 - 0.389394
gspK CPS_4584 general secretion pathway protein Kchromosome CDS4838189 1116 - 0.382616
gspL CPS_4583 general secretion pathway protein Lchromosome CDS4836837 1353 - 0.405765
gspM CPS_4582 general secretion pathway protein Mchromosome CDS4836367 471 - 0.377919
lepB1 CPS_0009 signal peptidase Ichromosome CDS10789 693 - 0.369408
lepB2 CPS_1803 signal peptidase Ichromosome CDS1855580 762 - 0.335958
lepB3 CPS_4123 signal peptidase Ichromosome CDS4338786 933 - 0.381565
lspA CPS_1183 signal peptidase IIchromosome CDS1211442 543 + 0.377532
mshB CPS_4570 MSHA pilin protein MshBchromosome CDS4823238 690 - 0.381159
mshE CPS_4573 MSHA biogenesis protein MshEchromosome CDS4825939 1713 - 0.398132
mshG CPS_4572 MSHA biogenesis protein MshGchromosome CDS4824659 1227 - 0.401793
mshL CPS_4576 MSHA biogenesis protein MshLchromosome CDS4829825 1830 - 0.390164
mshM CPS_4575 MSHA biogenesis protein MshMchromosome CDS4828868 903 - 0.384275
pilB CPS_4447 type IV pilus biogenesis protein PilBchromosome CDS4683825 1701 + 0.388007
pilC CPS_4448 type IV pilus biogenesis protein PilCchromosome CDS4685644 1260 + 0.384127
pilD CPS_4449 type 4 prepilin-like proteins leader peptide processing enzyme PilDchromosome CDS4687011 906 + 0.35872
pilE CPS_1217 type IV pilus biogenesis protein PilEchromosome CDS1251986 426 + 0.392019
pilM CPS_0467 type IV pilus biogenesis protein PilMchromosome CDS469834 1080 + 0.400926
pilN CPS_0468 type IV pilus biogenesis protein PilNchromosome CDS470901 567 + 0.343915
pilO CPS_0469 type IV pilus biogenesis protein PilOchromosome CDS471467 597 + 0.368509
pilP CPS_0470 type IV pilus biogenesis protein PilPchromosome CDS472060 555 + 0.4
pilT CPS_3662 twitching motility protein PilTchromosome CDS3806379 1044 - 0.400383
pilU CPS_3661 twitching motility protein PilUchromosome CDS3805205 1128 - 0.406028
secA CPS_4454 preprotein translocase, SecA subunitchromosome CDS4690796 2682 - 0.383669
secB CPS_4388 preprotein translocase, SecB subunitchromosome CDS4624112 498 - 0.381526
secD CPS_1122 protein-export membrane protein SecDchromosome CDS1144707 1848 + 0.395022
secE CPS_4778 preprotein translocase, SecE subunitchromosome CDS5063610 381 - 0.404199
secF CPS_1123 protein-export membrane protein SecFchromosome CDS1146575 948 + 0.369198
secG CPS_3447 preprotein translocase, SecG subunitchromosome CDS3582600 405 - 0.4
secY CPS_0621 preprotein translocase, SecY subunitchromosome CDS619717 1338 + 0.425262
sohB CPS_1193 sohB protein, peptidase U7 familychromosome CDS1220779 1050 + 0.365714
sppA CPS_2585 signal peptide peptidase SppA, 67K typechromosome CDS2688624 1914 - 0.3814
tatA1 CPS_0163 Sec-independent protein translocase protein TatAchromosome CDS174742 258 + 0.341085
tatA2 CPS_3045 Sec-independent protein translocase protein TatAchromosome CDS3180781 240 - 0.329167
tatB1 CPS_0164 Sec-independent protein translocase protein TatBchromosome CDS175003 474 + 0.405063
tatB2 CPS_3044 Sec-independent protein translocase protein TatBchromosome CDS3180469 309 - 0.368932
tatC1 CPS_0165 Sec-independent periplasmic protein translocation protein TatCchromosome CDS175473 768 + 0.36849
tatC2 CPS_3043 Sec-independent periplasmic protein translocation protein TatCchromosome CDS3179711 759 - 0.350461
tolB CPS_1731 tolB proteinchromosome CDS1780014 1350 + 0.397778
tolC CPS_4181 outer membrane protein TolCchromosome CDS4400599 1350 + 0.387407
tolQ CPS_1728 tolQ proteinchromosome CDS1777815 687 + 0.391557
tolR CPS_1729 tolR proteinchromosome CDS1778511 426 + 0.443662
yajC CPS_1121 preprotein translocase, YajC subunitchromosome CDS1144168 336 + 0.39881