Gene list
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COG category: Intracellular trafficking and secretion
Organism: Xanthomonas campestris pv. campestris str. 8004, 8004
Number of genes found: 130
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| Xanthomonas campestris pv. campestris str. 8004, 8004 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | XC_3003 | HrcC protein | SubName: Full=HrcC protein; | chromosome | CDS | 3597742 | 1818 | - | 0.651265 |
| NA | XC_2262 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 2724249 | 621 | + | 0.705314 |
| NA | XC_0938 | fimbrial assembly protein | SubName: Full=Fimbrial assembly protein; | chromosome | CDS | 1126748 | 534 | - | 0.636704 |
| NA | XC_1993 | biopolymer transport protein | SubName: Full=Biopolymer transport protein; | chromosome | CDS | 2404829 | 669 | + | 0.663677 |
| NA | XC_2272 | flagellar biosynthesis | SubName: Full=Flagellar biosynthesis; | chromosome | CDS | 2732382 | 270 | + | 0.596296 |
| NA | XC_2270 | flagellar biosynthetic protein | SubName: Full=Flagellar biosynthetic protein; | chromosome | CDS | 2730454 | 843 | + | 0.657177 |
| NA | XC_1627 | fimbrial biogenesis protein | SubName: Full=Fimbrial biogenesis protein; | chromosome | CDS | 1952524 | 552 | - | 0.603261 |
| NA | XC_1139 | TolR protein | SubName: Full=TolR protein; | chromosome | CDS | 1381563 | 450 | + | 0.653333 |
| NA | XC_1056 | type IV pre-pilin leader peptidase | RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; | chromosome | CDS | 1271594 | 864 | - | 0.643519 |
| NA | XC_1738 | protein-export membrane protein | RecName: Full=Protein translocase subunit SecD; | chromosome | CDS | 2101051 | 1869 | + | 0.645265 |
| NA | XC_2277 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 2742233 | 1131 | + | 0.650752 |
| NA | XC_1994 | biopolymer transport protein | SubName: Full=Biopolymer transport protein; | chromosome | CDS | 2405501 | 438 | + | 0.616438 |
| NA | XC_2247 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 2707501 | 414 | + | 0.635266 |
| NA | XC_3832 | protease IV | RecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; | chromosome | CDS | 4527703 | 1902 | - | 0.667718 |
| NA | XC_1358 | twitching motility protein | SubName: Full=Twitching motility protein; | chromosome | CDS | 1642463 | 1038 | + | 0.608863 |
| NA | XC_2917 | virulence protein | SubName: Full=Virulence protein; | chromosome | CDS | 3503159 | 1374 | - | 0.679767 |
| NA | XC_2796 | outer membrane protein | SubName: Full=Outer membrane protein; | chromosome | CDS | 3361927 | 1425 | - | 0.678596 |
| NA | XC_0745 | type II secretion system protein J | SubName: Full=Type II secretion system protein J; | chromosome | CDS | 892181 | 603 | + | 0.68325 |
| NA | XC_0009 | biopolymer transport ExbB protein | SubName: Full=Biopolymer transport ExbB protein; | chromosome | CDS | 11315 | 762 | + | 0.637795 |
| NA | XC_3006 | HrpB6 protein | SubName: Full=HrpB6 protein; | chromosome | CDS | 3601065 | 1329 | - | 0.667419 |
| NA | XC_3009 | HrcJ protein | SubName: Full=HrcJ protein; | chromosome | CDS | 3603708 | 765 | - | 0.64183 |
| NA | XC_4318 | avirulence protein | SubName: Full=Avirulence protein; | chromosome | CDS | 5126450 | 1872 | + | 0.690705 |
| NA | XC_0696 | NTPase | SubName: Full=NTPase; | chromosome | CDS | 836807 | 714 | + | 0.596639 |
| NA | XC_2259 | flagellar protein | RecName: Full=Flagellar hook-basal body complex protein FliE; | chromosome | CDS | 2721200 | 318 | + | 0.669811 |
| NA | XC_3221 | type IV fimbriae assembly protein | SubName: Full=Type IV fimbriae assembly protein; | chromosome | CDS | 3866534 | 354 | - | 0.629943 |
| NA | XC_4179 | general secretory pathway related protein | SubName: Full=General secretory pathway related protein; | chromosome | CDS | 4934237 | 1812 | + | 0.68543 |
| NA | XC_4182 | sec-independent protein translocase | RecName: Full=Sec-independent protein translocase protein TatC; | chromosome | CDS | 4938699 | 738 | - | 0.643631 |
| NA | XC_3501 | preprotein translocase SecA subunit | RecName: Full=Protein translocase subunit SecA; | chromosome | CDS | 4158171 | 2739 | - | 0.631617 |
| NA | XC_1622 | pre-pilin leader sequence | SubName: Full=Pre-pilin leader sequence; | chromosome | CDS | 1946007 | 474 | + | 0.540084 |
| NA | XC_2201 | fimbrial biogenesis protein | SubName: Full=Fimbrial biogenesis protein; | chromosome | CDS | 2649649 | 789 | - | 0.628644 |
| NA | XC_2970 | signal peptidase I | SubName: Full=Signal peptidase I; | chromosome | CDS | 3553742 | 801 | - | 0.615481 |
| NA | XC_1141 | TolB protein | RecName: Full=Protein TolB; Flags: Precursor; | chromosome | CDS | 1383304 | 1320 | + | 0.652273 |
| NA | XC_2264 | flagellar FliJ protein | SubName: Full=Flagellar FliJ protein; | chromosome | CDS | 2726246 | 456 | + | 0.664474 |
| NA | XC_1811 | virulence protein | SubName: Full=Virulence protein; | chromosome | CDS | 2201739 | 1248 | + | 0.6875 |
| NA | XC_0847 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1022298 | 2355 | + | 0.6569 |
| NA | XC_3048 | signal recognition particle protein | RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; | chromosome | CDS | 3647450 | 1377 | - | 0.652142 |
| NA | XC_1570 | FimV protein | SubName: Full=FimV protein; | chromosome | CDS | 1888755 | 2058 | + | 0.705053 |
| NA | XC_0744 | type II secretion system protein I | SubName: Full=Type II secretion system protein I; | chromosome | CDS | 891813 | 372 | + | 0.688172 |
| NA | XC_2231 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 2690071 | 312 | - | 0.628205 |
| NA | XC_3563 | general secretion pathway protein D | SubName: Full=General secretion pathway protein D; | chromosome | CDS | 4230359 | 2280 | - | 0.584211 |
| NA | XC_3265 | ATP-dependent Clp protease proteolytic subunit | RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; | chromosome | CDS | 3909776 | 627 | - | 0.620415 |
| NA | XC_1623 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1946484 | 1155 | + | 0.571429 |
| NA | XC_2858 | pili assembly chaperone | SubName: Full=Pili assembly chaperone; | chromosome | CDS | 3438275 | 756 | + | 0.675926 |
| NA | XC_1138 | TolQ protein | SubName: Full=TolQ protein; | chromosome | CDS | 1380692 | 780 | + | 0.641026 |
| NA | XC_0010 | biopolymer transport ExbD1 protein | SubName: Full=Biopolymer transport ExbD1 protein; | chromosome | CDS | 12123 | 423 | + | 0.602837 |
| NA | XC_1588 | protein-export membrane protein | SubName: Full=Protein-export membrane protein; | chromosome | CDS | 1907817 | 441 | + | 0.696145 |
| NA | XC_0940 | fimbrial assembly membrane protein | SubName: Full=Fimbrial assembly membrane protein; | chromosome | CDS | 1127940 | 771 | - | 0.652399 |
| NA | XC_1632 | VirB8 protein | SubName: Full=VirB8 protein; | chromosome | CDS | 1958610 | 1044 | + | 0.546935 |
| NA | XC_1639 | VirB4 protein | SubName: Full=VirB4 protein; | chromosome | CDS | 1964408 | 2454 | + | 0.524042 |
| NA | XC_1634 | VirB10 protein | SubName: Full=VirB10 protein; | chromosome | CDS | 1960414 | 1182 | + | 0.568528 |
| NA | XC_4042 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4756901 | 882 | + | 0.704082 |
| NA | XC_1625 | PilY1 protein | SubName: Full=PilY1 protein; | chromosome | CDS | 1948172 | 3729 | + | 0.52561 |
| NA | XC_4127 | cation efflux system protein | SubName: Full=Cation efflux system protein; | chromosome | CDS | 4864559 | 1266 | - | 0.722749 |
| NA | XC_3566 | general secretion pathway protein L | SubName: Full=General secretion pathway protein L; | chromosome | CDS | 4234035 | 1122 | - | 0.698752 |
| NA | XC_3567 | general secretion pathway protein K | RecName: Full=Type II secretion system protein K; | chromosome | CDS | 4235153 | 852 | - | 0.671362 |
| NA | XC_3573 | general secretion pathway protein E | SubName: Full=General secretion pathway protein E; | chromosome | CDS | 4239697 | 1740 | - | 0.644253 |
| NA | XC_1626 | type IV pilin | SubName: Full=Type IV pilin; | chromosome | CDS | 1951975 | 369 | + | 0.544715 |
| NA | XC_1737 | preprotein translocase YajC subunit | SubName: Full=Preprotein translocase YajC subunit; | chromosome | CDS | 2100390 | 354 | + | 0.641243 |
| NA | XC_0432 | outer membrane protein | SubName: Full=Outer membrane protein; | chromosome | CDS | 511621 | 1473 | - | 0.727766 |
| NA | XC_4257 | outer membrane efflux protein | SubName: Full=Outer membrane efflux protein; | chromosome | CDS | 5048860 | 1452 | + | 0.721074 |
| NA | XC_1057 | fimbrial assembly protein | SubName: Full=Fimbrial assembly protein; | chromosome | CDS | 1272464 | 1257 | - | 0.478918 |
| NA | XC_3017 | HrcS protein | SubName: Full=HrcS protein; | chromosome | CDS | 3610906 | 243 | + | 0.62963 |
| NA | XC_3012 | HrcU protein | SubName: Full=HrcU protein; | chromosome | CDS | 3605566 | 1074 | + | 0.625698 |
| NA | XC_2862 | pili assembly chaperone | SubName: Full=Pili assembly chaperone; | chromosome | CDS | 3442815 | 717 | + | 0.693166 |
| NA | XC_0746 | type II secretion system protein K | RecName: Full=Type II secretion system protein K; | chromosome | CDS | 892780 | 993 | + | 0.67573 |
| NA | XC_1060 | pilus biogenesis protein | SubName: Full=Pilus biogenesis protein; | chromosome | CDS | 1275066 | 1734 | + | 0.607843 |
| NA | XC_3013 | HrcV protein | SubName: Full=HrcV protein; | chromosome | CDS | 3606648 | 1923 | + | 0.632865 |
| NA | XC_1621 | pre-pilin like leader sequence | SubName: Full=Pre-pilin like leader sequence; | chromosome | CDS | 1945495 | 516 | + | 0.560078 |
| NA | XC_0739 | type II secretion system protein D | SubName: Full=Type II secretion system protein D; | chromosome | CDS | 886045 | 2073 | + | 0.683068 |
| NA | XC_0740 | type II secretion system protein E | SubName: Full=Type II secretion system protein E; | chromosome | CDS | 888122 | 1500 | + | 0.677333 |
| NA | XC_0828 | TolC protein | SubName: Full=TolC protein; | chromosome | CDS | 995033 | 1374 | - | 0.593886 |
| NA | XC_0519 | ice nucleation protein | SubName: Full=Ice nucleation protein; | chromosome | CDS | 612536 | 4002 | + | 0.648676 |
| NA | XC_3004 | HrpB8 protein | SubName: Full=HrpB8 protein; | chromosome | CDS | 3599736 | 831 | - | 0.628159 |
| NA | XC_3569 | general secretion pathway protein I | SubName: Full=General secretion pathway protein I; | chromosome | CDS | 4236636 | 417 | - | 0.666667 |
| NA | XC_1633 | VirB9 protein | SubName: Full=VirB9 protein; | chromosome | CDS | 1959650 | 768 | + | 0.46875 |
| NA | XC_1466 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1767564 | 1206 | + | 0.700663 |
| NA | XC_0941 | fimbrial assembly membrane protein | SubName: Full=Fimbrial assembly membrane protein; | chromosome | CDS | 1128710 | 1083 | - | 0.636196 |
| NA | XC_2016 | VirB6 protein | SubName: Full=VirB6 protein; | chromosome | CDS | 2429893 | 1143 | + | 0.546807 |
| NA | XC_1695 | cell division protein | RecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; | chromosome | CDS | 2034649 | 1641 | - | 0.704449 |
| NA | XC_4330 | 60 kDa inner-membrane protein | RecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; | chromosome | CDS | 5146145 | 1722 | - | 0.659117 |
| NA | XC_2263 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 2724866 | 1377 | + | 0.707335 |
| NA | XC_0213 | protein-export protein | RecName: Full=Protein-export protein SecB; | chromosome | CDS | 260786 | 513 | + | 0.643275 |
| NA | XC_3571 | general secretion pathway protein G | SubName: Full=General secretion pathway protein G; | chromosome | CDS | 4237569 | 432 | - | 0.645833 |
| NA | XC_1624 | PilX protein | SubName: Full=PilX protein; | chromosome | CDS | 1947641 | 519 | + | 0.552987 |
| NA | XC_2839 | outer membrane efflux protein | SubName: Full=Outer membrane efflux protein; | chromosome | CDS | 3413769 | 1515 | - | 0.711551 |
| NA | XC_3570 | general secretion pathway protein H | SubName: Full=General secretion pathway protein H; | chromosome | CDS | 4237049 | 510 | - | 0.721569 |
| NA | XC_1635 | VirB11 protein | SubName: Full=VirB11 protein; | chromosome | CDS | 1961592 | 1059 | + | 0.552408 |
| NA | XC_3015 | HrcQ protein | SubName: Full=HrcQ protein; | chromosome | CDS | 3609338 | 915 | + | 0.673224 |
| NA | XC_2479 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2997947 | 2373 | - | 0.667088 |
| NA | XC_0586 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 698986 | 1314 | + | 0.619483 |
| NA | XC_0736 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 880745 | 1599 | + | 0.657911 |
| NA | XC_0868 | VirB6 protein | SubName: Full=VirB6 protein; | chromosome | CDS | 1046446 | 1122 | - | 0.598039 |
| NA | XC_2273 | flagellar biosynthetic protein | RecName: Full=Flagellar biosynthetic protein fliR; | chromosome | CDS | 2732664 | 792 | + | 0.67803 |
| NA | XC_0937 | fimbrial assembly protein | SubName: Full=Fimbrial assembly protein; | chromosome | CDS | 1124782 | 1947 | - | 0.631741 |
| NA | XC_1059 | pilin | SubName: Full=Pilin; | chromosome | CDS | 1274567 | 435 | + | 0.510345 |
| NA | XC_1231 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1504683 | 435 | + | 0.671264 |
| NA | XC_3086 | lipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; | chromosome | CDS | 3696569 | 504 | - | 0.632937 |
| NA | XC_4183 | sec-independent protein translocase | RecName: Full=Sec-independent protein translocase protein TatB; | chromosome | CDS | 4939433 | 588 | - | 0.687075 |
| NA | XC_2393 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2885580 | 267 | - | 0.640449 |
| NA | XC_1775 | outer membrane protein OprN precursor | SubName: Full=Outer membrane protein OprN; | chromosome | CDS | 2159468 | 1512 | + | 0.71164 |
| NA | XC_1739 | protein-export membrane protein | RecName: Full=Protein-export membrane protein SecF; | chromosome | CDS | 2103011 | 969 | + | 0.615067 |
| NA | XC_1434 | outer membrane protein | SubName: Full=Outer membrane protein; | chromosome | CDS | 1731551 | 1494 | + | 0.674699 |
| NA | XC_2031 | Type IV secretory pathway, VirB4 components | SubName: Full=Type IV secretory pathway, VirB4 components; | chromosome | CDS | 2445406 | 2865 | - | 0.643979 |
| NA | XC_0748 | type II secretion system protein M | SubName: Full=Type II secretion system protein M; | chromosome | CDS | 894830 | 453 | + | 0.693157 |
| NA | XC_0939 | fimbrial assembly membrane protein | SubName: Full=Fimbrial assembly membrane protein; | chromosome | CDS | 1127278 | 666 | - | 0.627628 |
| NA | XC_3353 | translocase SecE | RecName: Full=Protein translocase subunit SecE; | chromosome | CDS | 4002115 | 357 | - | 0.568627 |
| NA | XC_1359 | twitching motility protein | SubName: Full=Twitching motility protein; | chromosome | CDS | 1643623 | 1131 | + | 0.617153 |
| NA | XC_2268 | flagellar protein | SubName: Full=Flagellar protein; | chromosome | CDS | 2729710 | 339 | + | 0.660767 |
| NA | XC_1630 | VirD4 protein | SubName: Full=VirD4 protein; | chromosome | CDS | 1956087 | 1674 | + | 0.596774 |
| NA | XC_2758 | outer membrane component of multidrug efflux pump | SubName: Full=Outer membrane component of multidrug efflux pump; | chromosome | CDS | 3313614 | 1404 | + | 0.663818 |
| NA | XC_2396 | filamentous haemagglutinin | SubName: Full=Filamentous haemagglutinin; | chromosome | CDS | 2887875 | 8745 | - | 0.655918 |
| NA | XC_0011 | biopolymer transport ExbD2 protein | SubName: Full=Biopolymer transport ExbD2 protein; | chromosome | CDS | 12549 | 411 | + | 0.605839 |
| NA | XC_4184 | sec-independent protein translocase | RecName: Full=Sec-independent protein translocase protein TatA; | chromosome | CDS | 4940036 | 228 | - | 0.649123 |
| NA | XC_3568 | general secretion pathway protein J | SubName: Full=General secretion pathway protein J; | chromosome | CDS | 4236001 | 639 | - | 0.677621 |
| NA | XC_3572 | general secretion pathway protein F | SubName: Full=General secretion pathway protein F; | chromosome | CDS | 4238265 | 1218 | - | 0.659277 |
| NA | XC_1618 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1939635 | 600 | + | 0.628333 |
| NA | XC_1058 | pilin | SubName: Full=Pilin; | chromosome | CDS | 1274047 | 441 | + | 0.55102 |
| NA | XC_2260 | flagellar protein | RecName: Full=Flagellar M-ring protein; | chromosome | CDS | 2721531 | 1722 | + | 0.671893 |
| NA | XC_2278 | flagellar biosynthetic protein FlhA | SubName: Full=Flagellar biosynthetic protein FlhA; | chromosome | CDS | 2743360 | 2094 | + | 0.679083 |
| NA | XC_3640 | type II secretion system protein-like protein | SubName: Full=Type II secretion system protein-like protein; | chromosome | CDS | 4322060 | 1140 | + | 0.631579 |
| NA | XC_3131 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3741002 | 1665 | + | 0.679279 |
| NA | XC_3320 | preprotein translocase SecY subunit | RecName: Full=Protein translocase subunit SecY; | chromosome | CDS | 3974084 | 1368 | - | 0.608918 |
| NA | XC_3823 | fimbrial protein | SubName: Full=Fimbrial protein; | chromosome | CDS | 4518770 | 405 | + | 0.624691 |
| NA | XC_3016 | HrcR protein | SubName: Full=HrcR protein; | chromosome | CDS | 3610239 | 645 | + | 0.59845 |
| NA | XC_0747 | type II secretion system protein L | SubName: Full=Type II secretion system protein L; | chromosome | CDS | 893769 | 1065 | + | 0.700469 |
| NA | XC_3821 | DNA processing chain A | SubName: Full=DNA processing chain A; | chromosome | CDS | 4516740 | 1137 | + | 0.703606 |
| NA | XC_3576 | outer membrane protein | SubName: Full=Outer membrane protein; | chromosome | CDS | 4243595 | 7056 | - | 0.686366 |
| NA | XC_0856 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1035995 | 360 | - | 0.608333 |
| NA | XC_0742 | type II secretion system protein G | SubName: Full=Type II secretion system protein G; | chromosome | CDS | 890831 | 465 | + | 0.677419 |
| NA | XC_0741 | type II secretion system protein F | SubName: Full=Type II secretion system protein F; | chromosome | CDS | 889608 | 1197 | + | 0.680869 |
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