Gene list
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COG category: Intracellular trafficking and secretion
Organism: Vibrio fischeri ES114, ES114
Number of genes found: 128
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Vibrio fischeri ES114, ES114 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | VF2475 | general secretion pathway protein C | SubName: Full=General secretion pathway protein C; | chromosome I | CDS | 2779824 | 909 | - | 0.386139 |
NA | VF1850 | flagellar assembly protein FliH | SubName: Full=Flagellar assembly protein FliH, negative regulator of FliI; | chromosome I | CDS | 2085748 | 798 | - | 0.39599 |
NA | VF2467 | general secretion pathway protein K | RecName: Full=Type II secretion system protein K; | chromosome I | CDS | 2771843 | 1035 | - | 0.395169 |
NA | VF0959 | TolR protein | SubName: Full=Membrane spanning protein in TolA-TolQ-TolR complex; | chromosome I | CDS | 1053827 | 447 | + | 0.380313 |
NA | VF2297 | pili assembly protein PilM | SubName: Full=Pili assembly protein PilM; | chromosome I | CDS | 2586006 | 1002 | - | 0.370259 |
NA | VF2293 | pili secretion protein PilQ | SubName: Full=Pili ecretion protein PilQ; | chromosome I | CDS | 2582591 | 1749 | - | 0.392224 |
NA | VF2296 | pili assembly protein PilN | SubName: Full=Pili assembly protein PilN; | chromosome I | CDS | 2585455 | 567 | - | 0.37037 |
NA | VF0431 | pili retraction protein PilT | SubName: Full=Predicted transporter; | chromosome I | CDS | 459371 | 1038 | + | 0.399807 |
NA | VF1849 | flagellum-specific ATP synthase | SubName: Full=Flagellum-specific ATP synthase FliI; EC=3.6.3.14; | chromosome I | CDS | 2084429 | 1320 | - | 0.431061 |
NA | VFA0069 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome II | CDS | 72806 | 774 | + | 0.366925 |
NA | VFB43 | VirB11 ATPase | SubName: Full=VirB11 ATPase; | pES100 | CDS | 31621 | 1008 | + | 0.400794 |
NA | VF2233 | type I secretion outer membrane protein | SubName: Full=Transport channel; | chromosome I | CDS | 2511967 | 1326 | + | 0.404977 |
NA | VFA0148 | PilA-like type-IV pilus protein | SubName: Full=PilA-like type-IV pilus protein; | chromosome II | CDS | 164865 | 387 | - | 0.366925 |
NA | VF1852 | flagellar M-ring protein FliF | RecName: Full=Flagellar M-ring protein; | chromosome I | CDS | 2087694 | 1734 | - | 0.412918 |
NA | VFA0229 | TadG-like protein | SubName: Full=TadG-like protein; | chromosome II | CDS | 252181 | 1272 | + | 0.387579 |
NA | VFB44 | protein VirD4 | SubName: Full=Protein VirD4; | pES100 | CDS | 32705 | 1827 | + | 0.380405 |
NA | VF2342 | periplasmic protein CpxP | SubName: Full=Periplasmic protein CpxP, modulator of CpxAR signaling; | chromosome I | CDS | 2638247 | 285 | - | 0.396491 |
NA | VF1848 | flagellar FliJ protein | SubName: Full=Flagellar export protein FliJ; | chromosome I | CDS | 2083975 | 444 | - | 0.385135 |
NA | VFA0224 | TadB-like protein involved in pilus formation and/or protein secretion | SubName: Full=TadB-like protein involved in pilus formation and/or protein secretion; | chromosome II | CDS | 248626 | 924 | + | 0.339827 |
NA | VF1881 | negative regulator of flagellin synthesis FlgM | SubName: Full=Flagellar anti-sigma-28 factor FlgM; | chromosome I | CDS | 2120388 | 312 | + | 0.400641 |
NA | VFA0872 | TcpC, toxin co-regulated pilus biosynthesis outer membrane protein | SubName: Full=Toxin coregulated pilus outer membrane protein TcpC; | chromosome II | CDS | 985094 | 1455 | - | 0.329897 |
NA | VF2295 | pili assembly protein PilO | SubName: Full=Pili assembly protein PilO; | chromosome I | CDS | 2584877 | 579 | - | 0.381693 |
NA | VF0519 | secretory protein containing TPR-repeats, similar to TadD | SubName: Full=Secretory protein containing TPR-repeats; | chromosome I | CDS | 555620 | 741 | + | 0.34143 |
NA | VF0516 | putative type IV secretion NTPase similar to TadA | SubName: Full=Putative type IV secretion NTPase; | chromosome I | CDS | 552549 | 1290 | + | 0.390698 |
NA | VFB42 | channel protein VirB10 | SubName: Full=Channel protein VirB10; | pES100 | CDS | 30428 | 1191 | + | 0.420655 |
NA | VF1967 | protein translocase subunit SecD | RecName: Full=Protein translocase subunit SecD; | chromosome I | CDS | 2203820 | 1857 | - | 0.417878 |
NA | VF0362 | type 4 fimbrial assembly protein PilB | SubName: Full=MSHA biogenesis protein MshE; | chromosome I | CDS | 394611 | 1725 | + | 0.4 |
NA | VFA0875 | TcpA, toxin co-regulated pilin precursor | SubName: Full=Toxin coregulated pilin subunit TcpA; | chromosome II | CDS | 988427 | 627 | - | 0.373206 |
NA | VFB40 | channel protein VirB8 | SubName: Full=Channel protein VirB8; | pES100 | CDS | 28836 | 681 | + | 0.41116 |
NA | VF2186 | pilus assembly protein PilB | SubName: Full=Pilus assembly protein PilB; | chromosome I | CDS | 2463866 | 1689 | + | 0.419775 |
NA | VFA0777 | TolR protein | SubName: Full=TonB system transport protein ExbD2; | chromosome II | CDS | 871282 | 405 | - | 0.404938 |
NA | VFA0226 | secretory protein containing TPR-repeats, similar to TadD | SubName: Full=Secretory protein containing TPR-repeats; | chromosome II | CDS | 250420 | 744 | + | 0.307796 |
NA | VFA1162 | iron-regulated protein FrpC | SubName: Full=RTX (Repeats in toxin) calcium-binding cytotoxin RtxA2; | chromosome II | CDS | 1306213 | 11802 | - | 0.415269 |
NA | VF2187 | pilus assembly protein PilC | SubName: Full=PilC; SubName: Full=Pilus assembly protein PilC; | chromosome I | CDS | 2465574 | 1239 | + | 0.37611 |
NA | VF0483 | protein translocase subunit SecG | SubName: Full=Preprotein translocase membrane subunit; | chromosome I | CDS | 518936 | 333 | + | 0.426426 |
NA | VF1040 | possible protease SohB | SubName: Full=Predicted inner membrane peptidase; EC=3.4.21.-; | chromosome I | CDS | 1149236 | 1062 | + | 0.382298 |
NA | VF2349 | protein translocase subunit SecB | RecName: Full=Protein-export protein SecB; | chromosome I | CDS | 2643743 | 471 | - | 0.430998 |
NA | VF2375 | multiple antibiotic resistance protein MarC | SubName: Full=Predicted inner membrane protein; | chromosome I | CDS | 2668998 | 624 | + | 0.402244 |
NA | VFA0222 | ATPases involved in chromosome partitioning | SubName: Full=ATPase involved in chromosome partitioning; | chromosome II | CDS | 246123 | 1218 | + | 0.338259 |
NA | VF1966 | protein translocase subunit SecF | RecName: Full=Protein-export membrane protein SecF; | chromosome I | CDS | 2202857 | 951 | - | 0.401682 |
NA | VF0363 | general secretion pathway protein F | SubName: Full=MSHA biogenesis protein MshG; | chromosome I | CDS | 396345 | 1227 | + | 0.398533 |
NA | VF0511 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 548216 | 438 | + | 0.287671 |
NA | VF0515 | ATPases involved in chromosome partitioning | SubName: Full=ATPase involved in chromosome partitioning; | chromosome I | CDS | 551304 | 1239 | + | 0.36481 |
NA | VF2468 | general secretion pathway protein J | SubName: Full=General secretion pathway protein J; | chromosome I | CDS | 2772877 | 681 | - | 0.378855 |
NA | VF0369 | hypothetical protein | SubName: Full=MSHA pilus assembly protein MshO; | chromosome I | CDS | 400610 | 726 | + | 0.349862 |
NA | VF2465 | general secretion pathway protein M | RecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; | chromosome I | CDS | 2770130 | 492 | - | 0.398374 |
NA | VF1840 | flagellar biosynthetic protein FliR | RecName: Full=Flagellar biosynthetic protein fliR; | chromosome I | CDS | 2078184 | 783 | - | 0.409962 |
NA | VF0572 | pili subunit PilA1 | SubName: Full=Pili subunit PilA1; | chromosome I | CDS | 626055 | 438 | + | 0.328767 |
NA | VFA0144 | HvnB; halovibrin | SubName: Full=Halovibrin HvnB; | chromosome II | CDS | 162204 | 939 | - | 0.396166 |
NA | VFA0868 | TcpT, toxin co-regulated pilus biosynthesis protein | SubName: Full=Toxin coregulated pilus biosynthesis protein TcpT; | chromosome II | CDS | 981908 | 1494 | - | 0.314592 |
NA | VF2185 | pilin subunit PilA | SubName: Full=Pilin subunit PilA; | chromosome I | CDS | 2463455 | 405 | + | 0.390123 |
NA | VF0875 | protein translocase subunit SecD | RecName: Full=Protein translocase subunit SecD; | chromosome I | CDS | 959801 | 1824 | - | 0.439145 |
NA | VF2473 | general secretion pathway protein E | SubName: Full=General secretion pathway protein E; | chromosome I | CDS | 2776259 | 1500 | - | 0.408 |
NA | VFA0225 | bipartite nuclear localization signal containing protein, similar to TadC | SubName: Full=Bipartite nuclear localization signal containing protein; | chromosome II | CDS | 249519 | 912 | + | 0.330044 |
NA | VFA0220 | general secretion pathway protein D | SubName: Full=General secretion pathway protein D; | chromosome II | CDS | 244266 | 1323 | + | 0.349962 |
NA | VF2422 | protein translocase subunit SecE | RecName: Full=Protein translocase subunit SecE; | chromosome I | CDS | 2714813 | 378 | - | 0.388889 |
NA | VFB41 | channel protein VirB9 | SubName: Full=Channel protein VirB9; | pES100 | CDS | 29523 | 909 | + | 0.393839 |
NA | VF1837 | flagellar biosynthesis protein FlhA | SubName: Full=Flagellar export pore protein FlhA; | chromosome I | CDS | 2073939 | 2094 | - | 0.417861 |
NA | VFB29 | exonuclease sbcC | SubName: Full=Exonuclease sbcC; EC=3.1.11.-; | pES100 | CDS | 18517 | 1554 | + | 0.39897 |
NA | VFA0195 | TolR protein | SubName: Full=TolR protein; | chromosome II | CDS | 218855 | 405 | + | 0.404938 |
NA | VF1162 | outer membrane protein TolC | SubName: Full=Outer membrane protein TolC; | chromosome I | CDS | 1291644 | 1281 | + | 0.373927 |
NA | VF1821 | heme exporter protein D | SubName: Full=Heme exporter protein D; | chromosome I | CDS | 2060880 | 207 | - | 0.36715 |
NA | VFB55 | channel protein VirB6 | SubName: Full=Channel protein VirB6; | pES100 | CDS | 44803 | 1035 | + | 0.386473 |
NA | VF1968 | protein translocase subunit YajC | SubName: Full=SecYEG protein translocase auxillary subunit; | chromosome I | CDS | 2205730 | 336 | - | 0.395833 |
NA | VF2294 | pilus expression protein | SubName: Full=Pili assembly protein PilP; | chromosome I | CDS | 2584366 | 519 | - | 0.421965 |
NA | VFA0167 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome II | CDS | 189879 | 453 | + | 0.392936 |
NA | VF1858 | flagellar protein FliS | SubName: Full=Flagellin chaperone FliS; | chromosome I | CDS | 2095181 | 411 | - | 0.399027 |
NA | VF0548 | signal recognition particle, subunit FFH/SRP54 | RecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; | chromosome I | CDS | 597322 | 1374 | + | 0.401747 |
NA | VF0003 | 60 kDa inner membrane protein YidC | RecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; | chromosome I | CDS | 2281 | 1626 | - | 0.407749 |
NA | VF1842 | flagellar biosynthetic protein FliP | SubName: Full=Flagellar biosynthesis protein FliP; | chromosome I | CDS | 2079283 | 870 | - | 0.406897 |
NA | VF2453 | cell division protein FtsY | RecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; | chromosome I | CDS | 2760056 | 1239 | - | 0.403551 |
NA | VFB39 | VirB4 ATPase | SubName: Full=VirB4 ATPase; | pES100 | CDS | 26299 | 2454 | + | 0.405053 |
NA | VF1839 | flagellar biosynthetic protein FlhB | SubName: Full=Flagellar export pore protein FlhB; | chromosome I | CDS | 2077008 | 1131 | - | 0.40672 |
NA | VF0051 | Sec-independent protein translocase protein TatC | RecName: Full=Sec-independent protein translocase protein TatC; | chromosome I | CDS | 57082 | 756 | + | 0.398148 |
NA | VF0796 | ATP-dependent Clp protease proteolytic subunit | RecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; | chromosome I | CDS | 871676 | 624 | + | 0.407051 |
NA | VF0522 | TadG-like protein | SubName: Full=TadG-like protein; | chromosome I | CDS | 557374 | 1398 | + | 0.388412 |
NA | VFA0592 | type I secretion outer membrane protein | SubName: Full=Type I secretion outer membrane protein; | chromosome II | CDS | 676228 | 1359 | - | 0.382634 |
NA | VF1643 | signal peptide peptidase SppA | RecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; | chromosome I | CDS | 1851358 | 1857 | + | 0.391492 |
NA | VF0368 | MshD | SubName: Full=MshD protein; | chromosome I | CDS | 400029 | 582 | + | 0.395189 |
NA | VF0468 | lipoprotein signal peptidase | RecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; | chromosome I | CDS | 501698 | 516 | + | 0.389535 |
NA | VF2541 | DNA processing protein | SubName: Full=DNA processing protein DprA (Smf), possibly competence-related; | chromosome I | CDS | 2869577 | 1110 | - | 0.431532 |
NA | VF2193 | protein translocase subunit SecA | RecName: Full=Protein translocase subunit SecA; | chromosome I | CDS | 2469955 | 2724 | - | 0.401248 |
NA | VF0359 | general secretion pathway protein D | SubName: Full=MSHA biogenesis protein MshL; | chromosome I | CDS | 390980 | 1641 | + | 0.398537 |
NA | VF0962 | TolB protein | RecName: Full=Protein TolB; Flags: Precursor; | chromosome I | CDS | 1056432 | 1353 | + | 0.385809 |
NA | VF0958 | TolQ protein | SubName: Full=Membrane spanning protein in TolA-TolQ-TolR complex; | chromosome I | CDS | 1053141 | 687 | + | 0.403202 |
NA | VF2471 | general secretion pathway protein G | SubName: Full=General secretion pathway protein G; | chromosome I | CDS | 2774530 | 453 | - | 0.426049 |
NA | VF2469 | general secretion pathway protein I | SubName: Full=General secretion pathway protein I; | chromosome I | CDS | 2773544 | 378 | - | 0.396825 |
NA | VFA0867 | TcpE, toxin co-regulated pilus biosynthesis protein | SubName: Full=Toxin coregulated pilus biosynthesis protein TcpE; | chromosome II | CDS | 980908 | 1047 | - | 0.288443 |
NA | VF1697 | latent nuclear antigen | SubName: Full=Latent nuclear antigen; | chromosome I | CDS | 1912411 | 4122 | - | 0.387676 |
NA | VF0432 | pili retraction protein PilU | SubName: Full=Pili retraction protein PilU; | chromosome I | CDS | 460411 | 1101 | + | 0.420527 |
NA | VF1223 | TolR protein | SubName: Full=TonB system transport protein ExbD1; | chromosome I | CDS | 1360035 | 420 | - | 0.354762 |
NA | VF2188 | type 4 prepilin peptidase | RecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; | chromosome I | CDS | 2466917 | 888 | + | 0.396396 |
NA | VFA0077 | MshO | SubName: Full=MshO protein; | chromosome II | CDS | 84201 | 795 | - | 0.426415 |
NA | VF2466 | general secretion pathway protein L | RecName: Full=Type II secretion system protein L; Short=T2SS protein L; | chromosome I | CDS | 2770621 | 1254 | - | 0.407496 |
NA | VFA0779 | TolQ protein | SubName: Full=TolQ protein; | chromosome II | CDS | 872216 | 1353 | - | 0.386548 |
NA | VF0518 | bipartite nuclear localization signal containing protein, similar to TadC | SubName: Full=Bipartite nuclear localization signal containing protein; | chromosome I | CDS | 554755 | 873 | + | 0.355097 |
NA | VF1841 | flagellar biosynthetic protein FliQ | SubName: Full=Flagellar biosynthesis protein FliQ; | chromosome I | CDS | 2079004 | 270 | - | 0.414815 |
NA | VFA0443 | copper/silver resistance outer membrane protein | SubName: Full=Copper/silver resistance outer membrane protein; | chromosome II | CDS | 507325 | 1335 | + | 0.373034 |
NA | VFA0778 | TolQ protein | SubName: Full=TolQ protein; | chromosome II | CDS | 871683 | 534 | - | 0.413858 |
NA | VF0570 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 624844 | 645 | - | 0.344186 |
NA | VFB26 | hypothetical protein | SubName: Full=Uncharacterized protein; | pES100 | CDS | 15333 | 1440 | + | 0.395139 |
NA | VF0571 | pili retraction protein PilT | SubName: Full=Type IV pilin, putative; | chromosome I | CDS | 625442 | 516 | - | 0.344961 |
NA | VF0874 | protein translocase subunit SecF | RecName: Full=Protein-export membrane protein SecF; | chromosome I | CDS | 958898 | 900 | - | 0.435556 |
NA | VFA0218 | fimbrial protein precursor Flp1 | SubName: Full=Fimbrial protein Flp1; | chromosome II | CDS | 242799 | 219 | + | 0.351598 |
NA | VF1844 | flagellar motor switch protein FliN | SubName: Full=Flagellar motor switch component FliN; | chromosome I | CDS | 2080549 | 390 | - | 0.410256 |
NA | VF1853 | flagellar hook-basal body complex protein FliE | RecName: Full=Flagellar hook-basal body complex protein FliE; | chromosome I | CDS | 2089445 | 312 | - | 0.413462 |
NA | VFA1163 | type I secretion outer membrane protein | SubName: Full=Outer membrane protein; | chromosome II | CDS | 1318554 | 1317 | + | 0.374336 |
NA | VFA0223 | putative type IV secretion NTPase similar to TadA | SubName: Full=Putative type IV secretion NTPase; | chromosome II | CDS | 247343 | 1287 | + | 0.390831 |
NA | VFA0194 | TolQ protein | SubName: Full=TolQ protein; | chromosome II | CDS | 218349 | 510 | + | 0.421569 |
NA | VF0050 | Sec-independent protein translocase protein TatB | RecName: Full=Sec-independent protein translocase protein TatB; | chromosome I | CDS | 56699 | 381 | + | 0.419948 |
NA | VF0049 | Sec-independent protein translocase protein TatA | RecName: Full=Sec-independent protein translocase protein TatA; | chromosome I | CDS | 56447 | 249 | + | 0.353414 |
NA | VF0018 | NADH dehydrogenase subunit II-related protein | SubName: Full=NADH dehydrogenase subunit II-related protein; | chromosome I | CDS | 20925 | 252 | + | 0.388889 |
NA | VF0513 | general secretion pathway protein D | SubName: Full=General secretion pathway protein D; | chromosome I | CDS | 549477 | 1311 | + | 0.394355 |
NA | VF2474 | general secretion pathway protein D | SubName: Full=General secretion pathway protein D; | chromosome I | CDS | 2777758 | 2022 | - | 0.417903 |
NA | VF0360 | general secretion pathway protein A | SubName: Full=MSHA biogenesis protein MshM; | chromosome I | CDS | 392633 | 849 | + | 0.38987 |
NA | VF0627 | PilF protein | SubName: Full=Type IV pilus biogenesis/stability protein; | chromosome I | CDS | 683798 | 633 | + | 0.406003 |
NA | VF0510 | fimbrial protein precursor | SubName: Full=Fimbrial protein; | chromosome I | CDS | 547989 | 216 | + | 0.375 |
NA | VF0257 | Protein translocase subunit SecY | RecName: Full=Protein translocase subunit SecY; | chromosome I | CDS | 262831 | 1332 | + | 0.436937 |
NA | VF2456 | multiple antibiotic resistance protein MarC | SubName: Full=Multiple antibiotic resistance protein MarC; | chromosome I | CDS | 2762379 | 594 | + | 0.39899 |
NA | VF1617 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome I | CDS | 1815586 | 396 | + | 0.348485 |
NA | VF2470 | general secretion pathway protein H | SubName: Full=General secretion pathway protein H; | chromosome I | CDS | 2773911 | 597 | - | 0.430486 |
NA | VF2472 | general secretion pathway protein F | SubName: Full=General secretion pathway protein F; | chromosome I | CDS | 2775044 | 1215 | - | 0.405761 |
NA | VF0517 | TadB-like protein involved in pilus formation and/or protein secretion | SubName: Full=TadB-like protein involved in pilus formation and/or protein secretion; | chromosome I | CDS | 553838 | 918 | + | 0.376906 |
NA | VF0512 | conserved hypothetical protein | SubName: Full=Flp pilus assembly protein CpaB family; | chromosome I | CDS | 548661 | 813 | + | 0.372694 |
NA | VFA0894 | putative surface protein | SubName: Full=Putative surface protein; | chromosome II | CDS | 1014502 | 1797 | + | 0.390651 |
NA | VF2088 | signal peptidase I | RecName: Full=Signal peptidase I; EC=3.4.21.89; | chromosome I | CDS | 2330734 | 903 | - | 0.41639 |
NA | VFA0076 | MshP | SubName: Full=MshP protein; | chromosome II | CDS | 83795 | 435 | - | 0.406897 |
NA | VF2243 | general secretion pathway protein A | SubName: Full=General secretion pathway protein A; | chromosome I | CDS | 2525780 | 1557 | - | 0.391137 |