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2024-05-07 11:38:01

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043

Number of genes found: 137

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Erwinia carotovora subsp. atroseptica SCRI1043, SCRI1043
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA ECA0792 putative type IV pilus proteinchromosome CDS866383 1404 + 0.565527
NA ECA3626 putative type II/IV secretion system proteinchromosome CDS4075862 1017 - 0.559489
NA ECA0641 putative exported proteinchromosome CDS711151 396 - 0.507576
NA ECA0793 putative type IV pilus proteinchromosome CDS867805 981 + 0.556575
NA ECA0791 conserved hypothetical proteinchromosome CDS865144 1200 + 0.584167
NA ECA0800 conserved hypothetical proteinchromosome CDS883680 1791 + 0.582915
NA ECA0926 putative biopolymer transport proteinchromosome CDS1034710 669 - 0.559043
NA ECA0929 biopolymer transport proteinchromosome CDS1038716 402 - 0.519901
NA ECA1667 putative type IV pilin protein precursorchromosome CDS1915724 558 + 0.342294
NA ECA4445 putative membrane proteinchromosome CDS4986512 1635 + 0.51682
NA ECA0789 putative membrane proteinchromosome CDS862985 1437 + 0.558803
NA ECA1121 putative membrane subunit of preprotein translocasechromosome CDS1274175 333 + 0.489489
NA ECA0787 putative membrane proteinchromosome CDS861360 552 + 0.539855
NA ECA3703 conserved hypothetical phage-related proteinchromosome CDS4147596 1152 - 0.529514
NA ECA1271 biopolymer transport proteinchromosome CDS1445229 777 - 0.567568
NA ECA0391 putative activator or transporter protein of haemolysin-like proteinchromosome CDS442927 1779 + 0.527825
NA ECA4097 putative membrane proteinchromosome CDS4565664 570 - 0.522807
NA ECA4299 putative biopolymer transport proteinchromosome CDS4814475 723 - 0.571231
NA ECA4098 conserved hypothetical proteinchromosome CDS4566236 852 - 0.537559
NA ECA4157 putative membrane proteinchromosome CDS4645142 594 + 0.525253
NA ECA0939 putative fimbrial proteinchromosome CDS1052370 570 - 0.492982
NA ECA0943 fimbriae major subunit proteinchromosome CDS1057442 549 - 0.460838
NA ECA0799 putative outer membrane proteinchromosome CDS873754 9687 + 0.552906
NA ECA1098 putative type I secretion proteinchromosome CDS1229354 1443 - 0.568954
NA ECA1100 conserved hypothetical proteinchromosome CDS1242166 3771 - 0.549456
NA ECA0425 putative outer membrane efflux proteinchromosome CDS481914 1422 - 0.533755
NA ECA4405 conserved hypothetical proteinchromosome CDS4943487 1287 - 0.554779
NA ECA2128 conserved hypothetical proteinchromosome CDS2430108 1008 + 0.58631
NA ECA3395 hypothetical proteinchromosome CDS3808556 417 - 0.386091
NA ECA0942 putative outer membrane usher proteinchromosome CDS1054808 2493 - 0.519856
NA ECA3222 conserved hypothetical proteinchromosome CDS3605517 738 - 0.501355
NA ECA0794 putative type IV pilus proteinchromosome CDS868800 960 + 0.585417
NA ECA1668 putative type IV prepilinchromosome CDS1916388 1593 + 0.453861
NA ECA1099 large repetitive proteinchromosome CDS1231301 10848 - 0.560103
NA ECA0788 putative exported proteinchromosome CDS861960 945 + 0.555556
NA ECA3075 putative fimbrial chaperonechromosome CDS3432149 774 + 0.527132
NA ECA0940 putative exported proteinchromosome CDS1052967 1035 - 0.530435
NA ECA1195 putative membrane proteinchromosome CDS1356757 456 - 0.572368
NA ECA1656 putative membrane proteinchromosome CDS1905154 276 + 0.496377
NA ECA0658 putative exported proteinchromosome CDS731959 489 + 0.498978
NA ECA3076 putative fimbrial usher proteinchromosome CDS3432966 2382 + 0.538623
NA ECA1270 putative biopolymer transport proteinchromosome CDS1444792 423 - 0.51773
NA ECA0941 putative fimbrial chaperonechromosome CDS1054020 750 - 0.505333
NA ECA4298 putative biopolymer transport proteinchromosome CDS4814072 402 - 0.544776
NA ECA1385 putative exported proteinchromosome CDS1568546 1260 - 0.557143
NA ECA2932 putative outer membrane efflux lipoproteinchromosome CDS3276884 1473 + 0.567549
NA ECA3266 putative hemagglutinin/hemolysin-related proteinchromosome CDS3656910 13677 - 0.561454
NA ECA0396 putative haemolysin-like proteinchromosome CDS453261 1701 + 0.507937
NA ECA0798 putative membrane proteinchromosome CDS872064 1632 + 0.55576
NA ECA0573 putative plasmid-related proteinchromosome CDS635349 2862 + 0.510482
aggA ECA3267 agglutination proteinchromosome CDS3670963 1353 + 0.498891
ccmD ECA1885 heme exporter protein Dchromosome CDS2140688 222 + 0.594595
clpP ECA1148 ATP-dependent Clp protease proteolytic subunitchromosome CDS1301367 624 + 0.472756
cpxP ECA4310 putative stress resistance proteinchromosome CDS4828523 525 - 0.508571
exbB ECA0358 biopolymer transport proteinchromosome CDS409087 915 + 0.583607
exbD ECA0359 biopolymer transport proteinchromosome CDS410005 426 + 0.523474
ffh ECA3360 signal recognition particle proteinchromosome CDS3774839 1362 - 0.506608
flgM ECA1700 negative regulator of flagellin synthesischromosome CDS1949704 297 - 0.451178
flgN ECA1699 flagella synthesis proteinchromosome CDS1949261 438 - 0.456621
flhA ECA1697 flagellar biosynthesis proteinchromosome CDS1946687 2085 + 0.48777
flhB ECA1696 flagellar biosynthetic proteinchromosome CDS1945543 1152 + 0.469618
fliE ECA1727 flagellar hook-basal body complex proteinchromosome CDS1972671 315 + 0.48254
fliF ECA1726 flagellar M-ring proteinchromosome CDS1970686 1725 - 0.510145
fliH ECA1724 flagellar assembly proteinchromosome CDS1968982 723 - 0.522822
fliI ECA1723 flagellum-specific ATP synthasechromosome CDS1967612 1374 - 0.516012
fliJ ECA1722 flagellar proteinchromosome CDS1967157 447 - 0.46085
fliN ECA1718 flagellar motor switch protein flinchromosome CDS1963802 414 - 0.492754
fliP ECA1716 flagellar biosynthetic proteinchromosome CDS1962607 777 - 0.481338
fliQ ECA1715 flagellar biosynthetic proteinchromosome CDS1962317 270 - 0.485185
fliR ECA1714 flagellar biosynthetic proteinchromosome CDS1961529 786 - 0.458015
fliS ECA1729 flagellar proteinchromosome CDS1973615 411 - 0.486618
ftsY ECA4346 cell division proteinchromosome CDS4868002 1410 - 0.534043
hasF ECA1534 outer membrane secretion proteinchromosome CDS1783707 1371 - 0.574763
hecA1 ECA2117 hemolysin/hemagglutinin-like proteinchromosome CDS2408181 3405 + 0.577974
hecA2 ECA2118 hemolysin/hemagglutinin-like protein HecA precursorchromosome CDS2411693 14811 + 0.553102
hecB ECA2116 putative hemolysin activator proteinchromosome CDS2406458 1674 + 0.502389
hofB ECA3799 protein transport proteinchromosome CDS4246629 1473 + 0.545825
hofC ECA3800 protein transport proteinchromosome CDS4248098 1206 + 0.515755
hofQ ECA4094 putative type II secretion system proteinchromosome CDS4563346 1182 - 0.514382
hrcC ECA2100 type III secretion proteinchromosome CDS2386393 2070 + 0.578261
hrcJ ECA2095 type III secretion proteinchromosome CDS2383611 768 + 0.563802
hrcN ECA2083 type III secretion proteinchromosome CDS2370621 1371 - 0.615609
hrcQ ECA2080 type III secretion proteinchromosome CDS2368462 1218 - 0.582102
hrcR ECA2079 type III secretion proteinchromosome CDS2367812 654 - 0.550459
hrcS ECA2078 type III secretion proteinchromosome CDS2367544 261 - 0.544061
hrcT ECA2077 type III secretion proteinchromosome CDS2366737 801 - 0.549313
hrcU ECA2076 type III secretion proteinchromosome CDS2365644 1080 - 0.565741
hrpI ECA2085 type III secretion proteinchromosome CDS2372933 2103 - 0.566334
lepB ECA3279 signal peptidase Ichromosome CDS3683661 966 - 0.506211
lspA ECA3875 lipoprotein signal peptidasechromosome CDS4334856 513 - 0.510721
marC ECA3373 multiple antibiotic resistance proteinchromosome CDS3788942 675 + 0.49037
ogl ECA2426 oligogalacturonate lyasechromosome CDS2738982 1167 - 0.488432
oprJ ECA3446 multidrug resistance outer membrane proteinchromosome CDS3865039 1404 - 0.514957
outC ECA3110 general secretion pathway protein Cchromosome CDS3470224 864 - 0.515046
outD ECA3109 general secretion pathway protein Dchromosome CDS3468183 1953 - 0.523297
outE ECA3108 general secretion pathway protein Echromosome CDS3466690 1497 - 0.554442
outF ECA3107 general secretion pathway protein Fchromosome CDS3465462 1227 - 0.551752
outG ECA3106 general secretion pathway protein Gchromosome CDS3464954 441 - 0.521542
outH ECA3105 general secretion pathway protein Hchromosome CDS3464313 567 - 0.537919
outI ECA3104 general secretion pathway protein Ichromosome CDS3463951 366 - 0.557377
outJ ECA3103 general secretion pathway protein Jchromosome CDS3463301 651 - 0.516129
outK ECA3102 general secretion pathway protein Kchromosome CDS3462318 987 - 0.521783
outL ECA3101 general secretion pathway protein Lchromosome CDS3461044 1278 - 0.551643
outM ECA3100 general secretion pathway protein Mchromosome CDS3460553 495 - 0.543434
outN ECA3099 general secretion pathway protein Nchromosome CDS3459817 747 - 0.552878
outO ECA3098 type 4 prepilin-like proteins leader peptide processing enzymechromosome CDS3458845 849 - 0.551237
pelI ECA1094 pectate lyasechromosome CDS1222651 1044 - 0.477012
pilN ECA0534 putative Type IV pilus proteinchromosome CDS606013 1665 + 0.518318
pilQ ECA0538 putative Type IV pilus nucleotide-binding proteinchromosome CDS609487 1560 + 0.553205
pilU ECA0543 putative prepilin peptidasechromosome CDS613398 660 + 0.530303
ppdB ECA0990 prepilin peptidase dependent protein B precursorchromosome CDS1101908 612 + 0.529412
ppdD ECA3798 prepilin peptidase dependent protein Dchromosome CDS4246180 447 + 0.530201
prtF ECA2781 protease secretion proteinchromosome CDS3118174 1347 - 0.552339
secA ECA3806 preprotein translocase SecA subunitchromosome CDS4252890 2703 - 0.502405
secB ECA0172 protein-export proteinchromosome CDS192299 477 + 0.522013
secD ECA1122 protein-export membrane proteichromosome CDS1274535 1848 + 0.515693
secE ECA0217 preprotein translocase SecE subunitchromosome CDS251779 384 + 0.520833
secF ECA1123 protein-export membrane proteinchromosome CDS1276393 969 + 0.493292
secG ECA0702 protein-export membrane proteinchromosome CDS772670 333 + 0.504505
secY ECA4011 preprotein translocase subunitchromosome CDS4490834 1332 - 0.457207
smf ECA3998 conserved hypothetical proteinchromosome CDS4481200 1122 - 0.509804
sohB ECA2288 proteasechromosome CDS2593787 1053 - 0.519468
sppA ECA2339 protease IVchromosome CDS2649493 1851 + 0.517018
tatA ECA0199 sec-independent protein translocasechromosome CDS226078 261 + 0.48659
tatB ECA0200 sec-independent protein translocasechromosome CDS226342 594 + 0.518519
tatC ECA0201 sec-independent protein translocase proteinchromosome CDS226939 756 + 0.511905
tatE ECA1296 Sec-independent protein translocase proteinchromosome CDS1469182 198 + 0.489899
tolB ECA1373 TolB proteinchromosome CDS1553863 1293 + 0.532096
tolC ECA0330 outer membrane proteinchromosome CDS377889 1401 - 0.523198
tolQ ECA1370 TolQ proteinchromosome CDS1551348 687 + 0.496361
tolR ECA1371 tolR proteinchromosome CDS1552047 426 + 0.502347
virB10 ECA1614 putative conjugal transfer proteinchromosome CDS1868881 1320 - 0.619697
virB11 ECA1613 putative conjugal transfer proteinchromosome CDS1867875 1017 - 0.515241
virB4 ECA1620 putative conjugal transfer proteinchromosome CDS1874142 2748 - 0.566594
virB6 ECA1617 putative conjugal transfer proteinchromosome CDS1871989 1041 - 0.53122
virB8 ECA1616 putative conjugal transfer proteinchromosome CDS1871087 684 - 0.527778
virB9 ECA1615 putative conjugal transfer proteinchromosome CDS1870197 894 - 0.607383