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2024-05-05 21:33:55

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Yersinia pseudotuberculosis IP 32953, IP 32953

Number of genes found: 174

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pseudotuberculosis IP 32953, IP 32953
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YPTB3370 Putative membrane proteinchromosome CDS4004573 423 + 0.399527
NA YPTB3055 Prepilin peptidasechromosome CDS3606313 843 - 0.357058
NA YPTB2669 putative pili chaperone proteinchromosome CDS3152757 762 - 0.412073
NA YPTB2528 putative hemolysin activator/exporter, TPS familychromosome CDS2990905 1689 - 0.537004
NA YPTB3383 Possible MotA/TolQ/ExbB proton channel family proteinchromosome CDS4015577 1038 - 0.520231
NA YPTB0319 type III secretion system apparatus lipoprotein, EscJ/SsaJchromosome CDS385529 732 + 0.493169
NA YPTB0329 putative type III secretion apparatus protein EscT/SsaT/YscTchromosome CDS393843 795 + 0.515723
NA YPTB1412 putative exported proteinchromosome CDS1688784 1095 + 0.403653
NA YPTB3375 Putative type IV secretion ATPasechromosome CDS4008696 1287 + 0.422688
NA YPTB2371 putative fimbrial proteinchromosome CDS2793979 1164 - 0.462199
NA YPTB2104 putative membrane proteinchromosome CDS2481630 645 + 0.454264
NA pYptb0018 putative exported proteinpYptb32953 CDS14519 1251 + 0.440448
NA YPTB0158 putative outer membrane fimbrial usher porinchromosome CDS187253 2652 - 0.470965
NA YPTB3844 hemagglutinin/hemolysin-related proteinchromosome CDS4591809 1392 - 0.382902
NA YPTB0156 putative chaperone proteinchromosome CDS185085 747 - 0.481928
NA YPTB1413 putative exported proteinchromosome CDS1689878 1869 + 0.386303
NA YPTB1919 putative outer membrane fimbrial usher porinchromosome CDS2251952 2592 - 0.494985
NA YPTB3377 Putative exported proteinchromosome CDS4010851 834 + 0.300959
NA pYV0072 yscS; putative type III secretion proteinpYV CDS50163 267 + 0.453184
NA YPTB3894 putative fimbrial chaperonechromosome CDS4647756 768 - 0.427083
NA YPTB3896 fimbrial proteinchromosome CDS4651190 558 - 0.460573
NA pYV0013 hypothetical proteinpYV CDS9103 1299 - 0.43341
NA YPTB0322 putative type-III secretion protein, EscV/SsaV/LcrDchromosome CDS387685 2049 + 0.521718
NA YPTB3285 Putative autotransporter secreted proteinchromosome CDS3875363 3771 - 0.530894
NA YPTB1921 fimbrial proteinchromosome CDS2255416 531 - 0.485876
NA YPTB0328 putative type III secretion apparatus protein EscS/SsaS/YscSchromosome CDS393548 294 + 0.47619
NA YPTB3212 putative outer membrane protein secreting MTB familychromosome CDS3777406 1125 - 0.477333
NA pYV0086 yscJ, ylpB; putative type III secretion lipoproteinpYV CDS59745 735 + 0.428571
NA pYV0067 putative Yops secretion ATP synthasepYV CDS45443 1320 + 0.508333
NA YPTB3378 Conserved hypothetical proteinchromosome CDS4011668 771 + 0.35668
NA YPTB3381 Putative membrane protein.chromosome CDS4013489 1557 + 0.355812
NA YPTB3031 hypotheticalchromosome CDS3579414 570 - 0.461404
NA YPTB3755 conserved hypothetical proteinchromosome CDS4454443 897 - 0.521739
NA YPTB3461 putative hemolysin activator/exporterchromosome CDS4120123 1689 - 0.544109
NA YPTB2374 putative fimbrial proteinchromosome CDS2798850 543 - 0.425414
NA YPTB2527 putative hemolysinchromosome CDS2983155 7653 - 0.574938
NA YPTB3751 putative outer membrane secretin family proteinchromosome CDS4451304 1368 - 0.481725
NA YPTB3286 putative autotranporter secreted proteinchromosome CDS3879789 3765 - 0.534661
NA YPTB1024 putative membrane proteinchromosome CDS1231492 450 - 0.506667
NA YPTB0312 possible type III secretion protein EscC/SpiA, outer membrane porechromosome CDS380872 1572 + 0.43257
NA YPTB0159 putative fimbrial chaperonechromosome CDS189932 732 - 0.422131
NA YPTB0160 putative fimbrial proteinchromosome CDS190727 531 - 0.431262
NA YPTB2667 fimbrial proteinchromosome CDS3149364 609 - 0.433498
NA YPTB2394 putative surface proteinchromosome CDS2823649 2643 - 0.577374
NA YPTB3363 outer membrane fimbrial usher porinchromosome CDS3994683 2481 - 0.503829
NA YPTB2828 hypothetical proteinchromosome CDS3342915 396 + 0.242424
NA pYV0088 yscL; putative type III secretion proteinpYV CDS61087 633 + 0.450237
NA YPTB0330 putative type III secretion apparatus protein EscU/SsaU/YscUchromosome CDS394627 1068 + 0.487828
NA pYV0073 yscT; putative type III secretion proteinpYV CDS50426 786 + 0.428753
NA YPTB1061 putative pertactin family virulence factor/autotransporterchromosome CDS1268552 1917 - 0.472613
NA YPTB3030 putative prepilin peptidase dependent proteinchromosome CDS3578815 609 - 0.486043
NA pYV0079 yscC; putative type III secretion proteinpYV CDS55007 1824 + 0.453947
NA YPTB0323 putative type III secretion system ATPase, EscN/SsaN/YscNchromosome CDS389720 1338 + 0.574738
NA YPTB3843 putative TPS family hemolysin activator/secretion proteinchromosome CDS4589937 1764 - 0.462018
NA YPTB2843 putative fimbrial biogenesis proteinchromosome CDS3358797 750 - 0.489333
NA YPTB2670 frimbrial proteinchromosome CDS3153675 546 - 0.446886
NA pYV0071 yscR; putative Yop secretion membrane proteinpYV CDS49508 654 + 0.43578
NA YPTB1572 putative invasinchromosome CDS1895039 3228 - 0.45632
NA pYV0070 yscQ; putative type III secretion proteinpYV CDS48588 924 + 0.481602
NA YPTB2370 putative chaperone proteinchromosome CDS2793179 804 - 0.482587
NA YPTB3438 Possible Outer Membrane Factor (OMF) Family efflux porinchromosome CDS4079197 1527 + 0.521284
NA YPTB3664 conserved hypothetical proteinchromosome CDS4376472 1122 - 0.484848
NA YPTB1917 probable pili assembly chaperonechromosome CDS2249850 741 - 0.441296
NA YPTB2385 probable outer membrane usher proteinchromosome CDS2811932 2448 + 0.461193
NA YPTB3382 ExbD/TolR-family transport proteinchromosome CDS4015142 426 - 0.485915
NA YPTB3460 possible adhesin/hemolysinchromosome CDS4109942 10137 - 0.569892
NA YPTB3652 hemolysinchromosome CDS4350725 4908 + 0.446822
NA YPTB0359 putative outer membrane fimbrial usher proteinchromosome CDS424212 2379 + 0.46322
NA YPTB3362 fimbrial chaperone proteinchromosome CDS3993946 720 - 0.490278
NA YPTB0327 putative type III secretion apparatus protein, YscR/EscRchromosome CDS392901 651 + 0.463902
NA YPTB3376 Putative integral membrane protein.chromosome CDS4009979 876 + 0.334475
NA YPTB3789 possible Bacterial Ig-like domain (group 1)chromosome CDS4504366 16872 - 0.556603
NA YPTB0365 putative autotransporter proteinchromosome CDS433591 3795 - 0.527536
NA YPTB3061 general secretion pathway protein Hchromosome CDS3610749 543 - 0.346225
NA pYV0074 yscU; putative type III secretion proteinpYV CDS51211 1065 + 0.431925
NA YPTB1920 probable pili assembly chaperonechromosome CDS2254592 732 - 0.423497
NA YPTB3374 Conserved hypothetical proteinchromosome CDS4007557 1128 + 0.335993
NA YPTB3361 Fimbrial proteinchromosome CDS3992818 1104 - 0.491848
NA pYV0060 lcrD, yscV; putative membrane-bound Yop proteinpYV CDS40940 2115 - 0.46383
NA YPTB0326 type III secretion system apparatus protein, SsaQchromosome CDS391854 921 + 0.546145
NA YPTB2746 putative pertactin family virulence factor/autotransporterchromosome CDS3245878 2211 + 0.448213
NA YPTB2668 putative outer membrane fimbrial usher porinchromosome CDS3149957 2712 - 0.456121
NA YPTB0360 putative fimbrial chaperonechromosome CDS426662 744 + 0.43414
HlyA YPTB2028 putative hemolysin HlyAchromosome CDS2387168 4896 + 0.412377
HlyB YPTB2027 hemolysin activator protein HlyB, TPS secretion familychromosome CDS2385477 1662 + 0.383273
YapG YPTB3471 putative pertactin family virulence factor/autotransporterchromosome CDS4133871 2994 + 0.447896
ccmD YPTB2646 putative heme exporter protein Dchromosome CDS3125540 351 - 0.501424
clpP YPTB0959 proteolytic subunit of clpA-clpP ATP-dependent serine protease, heat shock protein F21.5chromosome CDS1152879 624 + 0.461538
cpxP YPTB0071 putative exported proteinchromosome CDS82113 489 + 0.464213
drcB YPTB0212 putative lipoproteinchromosome CDS255304 528 - 0.477273
ecpD YPTB2373 putative chaperone proteinchromosome CDS2797833 780 - 0.441026
ffh YPTB0833 4.5S-RNP protein (ffh), GTP binding export factor, part of signal recognition particle with 4.5S RNAchromosome CDS1000719 1362 + 0.483113
flgM YPTB1670 negative regulator of flagellin synthesischromosome CDS2024328 303 - 0.475248
flgN YPTB1669 flagella synthesis protein FlgNchromosome CDS2023869 441 - 0.485261
flhA YPTB1666 flagellar biosynthesis/export protein FlhAchromosome CDS2017622 2079 + 0.519
flhA YPTB3357 Putative flagellar biosynthesis/export membrane protein flhA, fhiA.chromosome CDS3986716 2097 + 0.450167
flhB YPTB1665 flagellar biosynthetic/export protein FlhBchromosome CDS2016462 1161 + 0.521102
flhB YPTB3356 Putative flagellar assembly/export protein, flhB.chromosome CDS3985596 1134 + 0.447972
fliE YPTB1704 flagellar hook-basal body complex protein FliEchromosome CDS2058868 312 + 0.49359
fliE YPTB3349 possible flagellar hook-basal body complex proteinchromosome CDS3980522 381 - 0.51706
fliF YPTB3348 putative flagellar M-ring proteinchromosome CDS3978872 1641 - 0.502742
fliF YPTB1703 flagellar M-ring proteinchromosome CDS2056803 1713 - 0.534151
fliH YPTB1701 flagellar assembly protein FliHchromosome CDS2055105 717 - 0.546722
fliH YPTB3346 Putative flagellar assembly/export proteinchromosome CDS3977136 717 - 0.542538
fliI YPTB3345 Putative flagellum export-specific ATPasechromosome CDS3975803 1341 - 0.57569
fliI YPTB1700 flagellum-specific ATP synthasechromosome CDS2053705 1401 - 0.552463
fliJ YPTB1699 flagellar protein FliJchromosome CDS2053183 447 - 0.478747
fliN YPTB3352 Flagellar switch proteinchromosome CDS3983362 414 + 0.444444
fliN YPTB1695 flagellar motor switch protein FliNchromosome CDS2049658 417 - 0.496403
fliP YPTB3353 Putative flagellar assembly/export protein, fliPchromosome CDS3983772 771 + 0.516213
fliP YPTB1693 flagellar biosynthetic protein FliPchromosome CDS2048241 825 - 0.513939
fliQ YPTB1692 flagellar biosynthetic protein FliQchromosome CDS2047866 270 - 0.518519
fliQ YPTB3354 Putative flagellar assembly/export protein, fliQchromosome CDS3984544 273 + 0.450549
fliR YPTB1691 flagellar biosynthetic protein FliRchromosome CDS2047081 783 - 0.496807
fliR YPTB3355 Putative flagellar assembly/export protein, fliRchromosome CDS3984823 774 + 0.47416
fliS YPTB1712 flagellar protein FliSchromosome CDS2066143 399 - 0.471178
fliS YPTB3324 Putative flagellar proteinchromosome CDS3957802 384 - 0.388021
ftsY YPTB0221 cell division proteinchromosome CDS263262 1725 + 0.474783
gspD YPTB3065 general secretion pathway protein Dchromosome CDS3614450 1923 - 0.334373
gspE YPTB3064 general secretion pathway protein Echromosome CDS3612942 1512 - 0.39418
gspF YPTB3063 Putative general secretion pathway protein F.chromosome CDS3611753 1203 - 0.339152
gspG YPTB3062 general secretion pathway protein Gchromosome CDS3611296 438 - 0.394977
gspI YPTB3060 General secretion pathway protein Ichromosome CDS3610367 345 - 0.330435
gspJ YPTB3059 Putative general secretion pathway protein Jchromosome CDS3609778 597 - 0.319933
gspK YPTB3058 General secretion pathway protein Kchromosome CDS3608813 957 - 0.310345
gspL YPTB3057 General secretion pathway protein Lchromosome CDS3607639 1191 - 0.319899
hasF YPTB3400 ABC-transporter outer membrane efflux componentchromosome CDS4037356 1395 + 0.469534
hofB YPTB0706 putative outer membrane protein export (MTB) sytem, hofB subunitchromosome CDS845082 1539 - 0.461339
hofC YPTB0705 putative outer membrane protein export (MTB) sytem, hofC subunitchromosome CDS843886 1200 - 0.456667
htrE YPTB2372 putative outer membrane fimbrial usher porinchromosome CDS2795139 2613 - 0.493685
ibeB YPTB0493 probable outer membrane multidrug efflux lipoprotein, OMF familychromosome CDS582446 1407 + 0.511016
lepB YPTB2891 signal peptidase Ichromosome CDS3421277 999 - 0.489489
lspA YPTB0618 prolipoprotein signal peptidase (SPase II)chromosome CDS734861 510 + 0.456863
marC YPTB2345 multiple antibiotic resistance proteinchromosome CDS2767066 684 + 0.44152
ogl YPTB2368 oligogalacturonate lyasechromosome CDS2790225 1167 - 0.457584
ppdD YPTB0707 putative major component of type IV pilin, prelipin peptidase dependent proteinchromosome CDS846613 465 - 0.447312
psaB YPTB1335 chaperone protein PsaB precursorchromosome CDS1589475 822 + 0.377129
psaC YPTB1336 outer membrane usher protein PsaC precursorchromosome CDS1590380 2472 + 0.497168
rcpA YPTB3372 putative outer membrane secretin family proteinchromosome CDS4005940 1320 + 0.377273
rscA YPTB0880 putative adhesin; involved in the adherence of host cellschromosome CDS1057177 6171 + 0.467995
rscB YPTB0879 TPS secretion family, afimbrail adhesion, hemopexin utilizationchromosome CDS1055346 1791 + 0.45282
secA YPTB0697 Type II general secretory pathway preprotein translocase ATPase subunit secAchromosome CDS834683 2715 + 0.485451
secB YPTB0277 preprotein translocase SecE subunitchromosome CDS332253 384 + 0.486979
secB YPTB0063 protein-export proteinchromosome CDS75354 477 + 0.484277
secD YPTB0930 preprotein translocase, IISP family, part of the channelchromosome CDS1123343 1848 + 0.488095
secF YPTB0931 preprotein translocase, IISP family, membrane subunitchromosome CDS1125201 969 + 0.47678
secG YPTB0477 protein-export membrane protein segGchromosome CDS562458 336 + 0.482143
secY YPTB3678 preprotein translocase SecY subunitchromosome CDS4387005 1332 - 0.459459
smfA YPTB2624 putative mannose-resistant/Proteus-like fimbrial proteinchromosome CDS3100626 531 - 0.46516
smfA YPTB3364 Putative mannose-resistant Proteus-like fimbrial proteinchromosome CDS3997470 531 - 0.474576
sohB YPTB2138 peptidase family U7 proteinchromosome CDS2513405 1047 + 0.483286
sppA YPTB2088 protease IVchromosome CDS2458473 1851 - 0.479741
tatA YPTB0258 Sec-independent protein translocase protein TatAchromosome CDS305426 267 + 0.438202
tatB YPTB0259 Sec-independent protein translocase protein TatBchromosome CDS305696 663 + 0.505279
tatC YPTB0260 Sec-independent protein translocase protein TatCchromosome CDS306361 777 + 0.447876
tatE YPTB1090 sec-independent protein translocase proteinchromosome CDS1307565 258 + 0.465116
tolB YPTB1159 TolB colicin import proteinchromosome CDS1384130 1293 + 0.4942
tolQ YPTB1156 TolQ colicin import proteinchromosome CDS1381605 687 + 0.487627
tolR YPTB1157 TolR colicin import membrane proteinchromosome CDS1382304 429 + 0.468531
triC pYptb0006 TriC proteinpYptb32953 CDS3506 2748 + 0.483624
triE pYptb0011 TriE proteinpYptb32953 CDS7975 1041 + 0.530259
triG pYptb0012 TriG proteinpYptb32953 CDS9186 684 + 0.423977
triH pYptb0013 TriH proteinpYptb32953 CDS9869 948 + 0.489451
triI pYptb0014 TriI proteinpYptb32953 CDS10813 1233 + 0.525547
triJ pYptb0015 TriJ proteinpYptb32953 CDS12262 1014 + 0.475345
yajC YPTB0929 putative preprotein translocase IISP family, membrane subunitchromosome CDS1122980 336 + 0.440476
yapB2 YPTB2849 putative pertactin family virulence factor/autotransporterchromosome CDS3369957 3366 + 0.499109
yapE YPTB3824 putative pertactin family virulence factor/autotransporterchromosome CDS4561332 3213 - 0.491441
yapF YPTB3449 Putative autotransporter proteinchromosome CDS4095115 2286 + 0.545932
yapH YPTB3303 putative pertactin family virulence factor/autotransporterchromosome CDS3925028 11121 - 0.531427
yhgN YPTB3791 possible MarC family transporterchromosome CDS4523987 594 + 0.468013
yidC YPTB3948 Oxa1 family transporterchromosome CDS4712105 1641 + 0.482023
yidR YPTB3902 conserved hypothetical proteinchromosome CDS4657611 1302 + 0.542243
yqiG YPTB3895 outer membrane fimbrial usher porinchromosome CDS4648616 2499 - 0.458183