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2024-05-20 04:05:32

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Vibrio cholerae O1 biovar eltor str. N16961, N16961

Number of genes found: 101

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Vibrio cholerae O1 biovar eltor str. N16961, N16961
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
VC0004 inner membrane protein, 60 kDaRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome I CDS2271 1626 - 0.492005
VC0048 smf proteinSubName: Full=Smf protein; chromosome I CDS46075 1116 + 0.513441
VC0086 tatA proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome I CDS84768 249 + 0.445783
VC0087 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatB; chromosome I CDS85020 402 + 0.529851
VC0088 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome I CDS85510 753 + 0.484728
VC0147 cell division protein FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome I CDS136954 1176 + 0.496599
VC0322 preprotein translocase, SecE subunitRecName: Full=Protein translocase subunit SecE; chromosome I CDS336719 396 + 0.484848
VC0400 MSHA biogenesis protein MshJSubName: Full=MSHA biogenesis protein MshJ; chromosome I CDS426732 651 + 0.483871
VC0402 MSHA biogenesis protein MshLSubName: Full=MSHA biogenesis protein MshL; chromosome I CDS427707 1680 + 0.477381
VC0403 MSHA biogenesis protein MshMSubName: Full=MSHA biogenesis protein MshM; chromosome I CDS429391 846 + 0.5
VC0405 MSHA biogenesis protein MshESubName: Full=MSHA biogenesis protein MshE; chromosome I CDS431374 1728 + 0.500579
VC0406 MSHA biogenesis protein MshGSubName: Full=MSHA biogenesis protein MshG; chromosome I CDS433110 1224 + 0.489379
VC0409 MSHA pilin protein MshASubName: Full=MSHA pilin protein MshA; chromosome I CDS435449 537 + 0.430168
VC0414 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS438229 3759 + 0.458101
VC0462 twitching motility protein PilTSubName: Full=Twitching motility protein PilT; chromosome I CDS491296 1038 + 0.487476
VC0463 twitching motility protein PilTSubName: Full=Twitching motility protein PilT; chromosome I CDS492348 1107 + 0.507678
VC0560 signal recognition particle proteinRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome I CDS594665 1386 + 0.5
VC0640 preprotein translocase, SecG subunitSubName: Full=Preprotein translocase, SecG subunit; chromosome I CDS682585 336 + 0.452381
VC0683 lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome I CDS731552 516 + 0.492248
VC0742 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS795485 333 + 0.456456
VC0743 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome I CDS795839 1854 + 0.499461
VC0744 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome I CDS797707 948 + 0.492616
VC0828 toxin co-regulated pilinRecName: Full=Toxin coregulated pilin; AltName: Full=Pilus colonization factor; Flags: Precursor; chromosome I CDS890449 675 + 0.432593
VC0831 toxin co-regulated pilus biosynthesis outer membrane protein CRecName: Full=Toxin coregulated pilus biosynthesis outer membrane protein C; AltName: Full=TCP pilus biosynthesis protein TcpC; Flags: Precursor; chromosome I CDS892950 1470 + 0.357143
VC0835 toxin co-regulated pilus biosynthesis protein TRecName: Full=Toxin coregulated pilus biosynthesis protein T; AltName: Full=TCP pilus biosynthesis protein TcpT; chromosome I CDS896155 1512 + 0.361772
VC0836 toxin co-regulated pilus biosynthesis protein ERecName: Full=Toxin coregulated pilus biosynthesis protein E; AltName: Full=TCP pilus biosynthesis protein TcpE; chromosome I CDS897641 1023 + 0.355816
VC0839 leader peptidase TcpJRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; Includes: RecName: Full=Leader peptidase; EC=3.4.23.43; AltName: Full=Prepilin peptidase; Includes: RecName: Full=N-methyltransferase; EC=2.1.1.-; chromosome I CDS900726 762 + 0.314961
VC0857 fimbrial assembly protein PilE, putativeSubName: Full=Fimbrial assembly protein PilE, putative; chromosome I CDS923726 444 - 0.439189
VC0858 type IV pilin, putativeSubName: Full=Type IV pilin, putative; chromosome I CDS924224 555 + 0.427027
VC0861 type IV pilin, putativeSubName: Full=Type IV pilin, putative; chromosome I CDS926571 414 + 0.451691
VC0930 hemolysin-related proteinSubName: Full=Hemolysin-related protein; chromosome I CDS993628 2874 + 0.47112
VC0975 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS1040356 570 - 0.482456
VC1060 sohB protein, peptidase U7 familySubName: Full=SohB protein, peptidase U7 family; chromosome I CDS1127705 1071 + 0.490196
VC1409 multidrug resistance protein, putativeSubName: Full=Multidrug resistance protein, putative; chromosome I CDS1501627 1455 + 0.48866
VC1451 RTX toxin RtxASubName: Full=RTX toxin RtxA; chromosome I CDS1550108 13677 + 0.486656
VC1485 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS1589366 1695 - 0.457227
VC1545 TonB system transport protein ExbD2RecName: Full=Biopolymer transport protein exbD2; chromosome I CDS1657857 405 - 0.501235
VC1546 TonB system transport protein ExbB2SubName: Full=TonB system transport protein ExbB2; chromosome I CDS1658258 543 - 0.497238
VC1547 biopolymer transport protein ExbB-related proteinSubName: Full=Biopolymer transport protein ExbB-related protein; chromosome I CDS1658807 1374 - 0.508734
VC1565 outer membrane protein TolC, putativeSubName: Full=Outer membrane protein TolC, putative; chromosome I CDS1676745 1260 + 0.490476
VC1606 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS1720423 1431 + 0.480783
VC1612 fimbrial biogenesis and twitching motility protein, putativeSubName: Full=Fimbrial biogenesis and twitching motility protein, putative; chromosome I CDS1726820 714 + 0.459384
VC1621 agglutination proteinSubName: Full=Agglutination protein; chromosome I CDS1741764 1338 + 0.462631
VC1798 eha proteinSubName: Full=Eha protein; chromosome I CDS1943306 1152 - 0.445312
VC1836 tolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome I CDS1977120 1353 - 0.453806
VC1838 tolR membrane proteinSubName: Full=TolR membrane protein; chromosome I CDS1979575 441 - 0.430839
VC1839 tolQ proteinSubName: Full=TolQ protein; chromosome I CDS1980018 684 - 0.461988
VC1922 ATP-dependent Clp protease, proteolytic subunitRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome I CDS2073209 603 - 0.464345
VC1994 protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome I CDS2147068 1851 + 0.488925
VC2035 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS2190929 639 + 0.485133
VC2054 heme exporter protein DSubName: Full=Heme exporter protein D; chromosome I CDS2210947 207 - 0.463768
VC2060 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS2214670 1017 - 0.468043
VC2069 flagellar biosynthetic protein FlhASubName: Full=Flagellar biosynthetic protein FlhA; chromosome I CDS2224331 2094 - 0.499522
VC2120 flagellar biosynthetic protein FlhBSubName: Full=Flagellar biosynthetic protein FlhB; chromosome I CDS2275104 1131 - 0.504863
VC2121 flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome I CDS2276244 783 - 0.498084
VC2122 flagellar biosynthetic protein FliQSubName: Full=Flagellar biosynthetic protein FliQ; chromosome I CDS2277035 270 - 0.451852
VC2123 flagellar biosynthetic protein FliPSubName: Full=Flagellar biosynthetic protein FliP; chromosome I CDS2277317 900 - 0.478889
VC2125 flagellar motor switch protein FliNSubName: Full=Flagellar motor switch protein FliN; chromosome I CDS2278587 417 - 0.505995
VC2129 flagellar protein FliJ, putativeSubName: Full=Flagellar protein FliJ, putative; chromosome I CDS2282851 495 - 0.460606
VC2130 flagellum-specific ATP synthase FliISubName: Full=Flagellum-specific ATP synthase FliI; chromosome I CDS2283309 1320 - 0.52803
VC2131 flagellar assembly protein FliH, putativeSubName: Full=Flagellar assembly protein FliH, putative; chromosome I CDS2284632 813 - 0.522755
VC2133 flagellar M-ring protein FliFRecName: Full=Flagellar M-ring protein; chromosome I CDS2286564 1743 - 0.503729
VC2134 flagellar hook-basal body complex protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome I CDS2288322 330 - 0.454545
VC2138 flagellar protein FliSRecName: Full=Flagellar protein FliS; chromosome I CDS2293010 411 - 0.462287
VC2141 flagellin FlaGRecName: Full=Protein FlaG; chromosome I CDS2295760 462 - 0.484848
VC2204 negative regulator of flagellin synthesis FlgM, putativeSubName: Full=Negative regulator of flagellin synthesis FlgM, putative; chromosome I CDS2349941 324 + 0.490741
VC2205 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome I CDS2350362 432 + 0.449074
VC2394 preprotein translocase, SecA subunitRecName: Full=Protein translocase subunit SecA; chromosome I CDS2560390 2712 - 0.489676
VC2423 fimbrial proteinSubName: Full=Fimbrial protein; chromosome I CDS2597151 504 + 0.39881
VC2424 type IV pilus assembly protein PilBSubName: Full=Type IV pilus assembly protein PilB; chromosome I CDS2597654 1689 + 0.528123
VC2425 type IV pilin biogenesis protein PilCRecName: Full=Type IV pilin assembly protein PilC; AltName: Full=Type IV-A pilus assembly protein PilC; chromosome I CDS2599385 1227 + 0.490628
VC2426 leader peptidase PilDRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome I CDS2600669 876 + 0.515982
VC2436 outer membrane protein TolCRecName: Full=Outer membrane protein TolC; AltName: Full=Multidrug efflux pump subunit TolC; Flags: Precursor; chromosome I CDS2610550 1317 + 0.487472
VC2445 general secretion pathway protein ASubName: Full=General secretion pathway protein A; chromosome I CDS2623621 1590 - 0.520126
VC2462 signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome I CDS2644199 897 - 0.491639
VC2576 preprotein translocase, SecY subunitRecName: Full=Protein translocase subunit SecY; chromosome I CDS2754257 1335 - 0.45618
VC2627 DamX-related proteinSubName: Full=DamX-related protein; chromosome I CDS2797815 1476 - 0.484417
VC2630 fimbrial assembly proteinSubName: Full=Fimbrial assembly protein; chromosome I CDS2801169 1737 - 0.468624
VC2631 fimbrial assembly protein PilP, putativeSubName: Full=Fimbrial assembly protein PilP, putative; chromosome I CDS2802910 519 - 0.491329
VC2632 fimbrial assembly protein PilO, putativeSubName: Full=Fimbrial assembly protein PilO, putative; chromosome I CDS2803418 600 - 0.495
VC2633 fimbrial assembly protein PilN, putativeSubName: Full=Fimbrial assembly protein PilN, putative; chromosome I CDS2804001 591 - 0.472081
VC2634 fimbrial assembly protein PilM, putativeSubName: Full=Fimbrial assembly protein PilM, putative; chromosome I CDS2804575 1017 - 0.471976
VC2653 protein-transport protein SecBRecName: Full=Protein-export protein SecB; chromosome I CDS2824274 465 - 0.496774
VC2691 periplasmic protein cpxP, putativeSubName: Full=Periplasmic protein cpxP, putative; chromosome I CDS2859114 504 - 0.513889
VC2724 cholera toxin secretion protein EpsMRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=Cholera toxin secretion protein EpsM; AltName: Full=General secretion pathway protein M; chromosome I CDS2897667 501 - 0.528942
VC2725 general secretion pathway protein LRecName: Full=Type II secretion system protein L; Short=T2SS protein L; AltName: Full=Cholera toxin secretion protein EpsL; AltName: Full=General secretion pathway protein L; chromosome I CDS2898174 1224 - 0.511438
VC2726 general secretion pathway protein KRecName: Full=Type II secretion system protein K; Short=T2SS protein K; AltName: Full=Cholera toxin secretion protein EpsK; AltName: Full=General secretion pathway protein K; chromosome I CDS2899354 1011 - 0.522255
VC2727 general secretion pathway protein JRecName: Full=Type II secretion system protein J; Short=T2SS protein J; AltName: Full=Cholera toxin secretion protein EpsJ; AltName: Full=General secretion pathway protein J; Flags: Precursor; chromosome I CDS2900354 666 - 0.522523
VC2728 general secretion pathway protein IRecName: Full=Type II secretion system protein I; Short=T2SS protein I; AltName: Full=Cholera toxin secretion protein EpsI; AltName: Full=General secretion pathway protein I; Flags: Precursor; chromosome I CDS2901006 354 - 0.522599
VC2729 general secretion pathway protein HRecName: Full=Type II secretion system protein H; Short=T2SS protein H; AltName: Full=Cholera toxin secretion protein EpsH; AltName: Full=General secretion pathway protein H; Flags: Precursor; chromosome I CDS2901349 585 - 0.511111
VC2730 general secretion pathway protein GRecName: Full=Type II secretion system protein G; Short=T2SS protein G; AltName: Full=Cholera toxin secretion protein EpsG; AltName: Full=General secretion pathway protein G; Flags: Precursor; chromosome I CDS2901967 441 - 0.478458
VC2731 general secretion pathway protein FRecName: Full=Type II secretion system protein F; Short=T2SS protein F; AltName: Full=Cholera toxin secretion protein EpsF; AltName: Full=General secretion pathway protein F; chromosome I CDS2902448 1221 - 0.532351
VC2732 general secretion pathway protein ERecName: Full=Type II secretion system protein E; Short=T2SS protein E; AltName: Full=Cholera toxin secretion protein EpsE; AltName: Full=General secretion pathway protein E; AltName: Full=Type II traffic warden ATPase; chromosome I CDS2903668 1512 - 0.525794
VC2734 general secretion pathway protein CRecName: Full=Type II secretion system protein C; Short=T2SS protein C; AltName: Full=Cholera toxin secretion protein EpsC; AltName: Full=General secretion pathway protein C; chromosome I CDS2907245 918 - 0.496732
VCA0533 tatA proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome II CDS471368 237 + 0.489451
VCA0628 SecA-related proteinSubName: Full=SecA-related protein; chromosome II CDS563793 2175 + 0.324138
VCA0693 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome II CDS631637 1839 - 0.479608
VCA0849 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome II CDS791029 9792 - 0.501225
VCA0863 lipase, putativeRecName: Full=Lysophospholipase VolA; AltName: Full=Vibrio outer membrane lysophospholipase A; Flags: Precursor; chromosome II CDS813130 2391 + 0.491844
VCA0911 TonB system transport protein ExbB1RecName: Full=Biopolymer transport protein exbB1; chromosome II CDS866440 687 + 0.531295
VCA0912 TonB system transport protein ExbD1RecName: Full=Biopolymer transport protein exbD1; chromosome II CDS867123 417 + 0.477218