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2024-05-18 01:47:27

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Vibrio parahaemolyticus RIMD 2210633, O3:K6

Number of genes found: 150

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
VP0003 inner membrane protein, 60 kDaRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome 1 CDS2389 1623 - 0.476278
VP0098 TatA proteinRecName: Full=Sec-independent protein translocase protein TatA; chromosome 1 CDS108027 246 + 0.406504
VP0099 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatB; chromosome 1 CDS108276 399 + 0.451128
VP0100 conserved hypothetical proteinRecName: Full=Sec-independent protein translocase protein TatC; chromosome 1 CDS108743 741 + 0.473684
VP0132 general secretion pathway protein CSubName: Full=General secretion pathway protein C; chromosome 1 CDS142696 924 + 0.467532
VP0133 general secretion pathway protein D precursorSubName: Full=General secretion pathway protein D; chromosome 1 CDS143656 2028 + 0.461538
VP0134 general secretion pathway protein ESubName: Full=General secretion pathway protein E; chromosome 1 CDS145683 1503 + 0.500333
VP0135 general secretion pathway protein FSubName: Full=General secretion pathway protein F; chromosome 1 CDS147185 1218 + 0.478654
VP0136 general secretion pathway protein GSubName: Full=General secretion pathway protein G; chromosome 1 CDS148464 444 + 0.457207
VP0137 general secretion pathway protein HSubName: Full=General secretion pathway protein H; chromosome 1 CDS148938 597 + 0.448911
VP0138 general secretion pathway protein ISubName: Full=General secretion pathway protein I; chromosome 1 CDS149581 330 + 0.481818
VP0139 general secretion pathway protein JSubName: Full=General secretion pathway protein J; chromosome 1 CDS149897 684 + 0.5
VP0140 general secretion pathway protein KRecName: Full=Type II secretion system protein K; chromosome 1 CDS150573 1011 + 0.470821
VP0141 general secretion pathway protein LRecName: Full=Type II secretion system protein L; Short=T2SS protein L; chromosome 1 CDS151540 1215 + 0.502058
VP0142 general secretion pathway protein MRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; chromosome 1 CDS152759 495 + 0.474747
VP0164 TonB system transport protein ExbD2SubName: Full=TonB system transport protein ExbD2; chromosome 1 CDS176883 408 - 0.480392
VP0165 TonB system transport protein ExbB2SubName: Full=TonB system transport protein ExbB2; chromosome 1 CDS177316 528 - 0.484848
VP0166 putative TolRSubName: Full=Putative TolR; chromosome 1 CDS177853 1362 - 0.454479
VP0277 preprotein translocase, SecY subunitRecName: Full=Protein translocase subunit SecY; chromosome 1 CDS276631 1335 + 0.44794
VP0415 putative general secretion pathway protein ASubName: Full=Putative general secretion pathway protein A; chromosome 1 CDS414714 1620 + 0.482716
VP0425 outer membrane protein TolCSubName: Full=Outer membrane protein TolC; chromosome 1 CDS428576 1329 - 0.457487
VP0467 SecA proteinRecName: Full=Protein translocase subunit SecA; chromosome 1 CDS470210 2727 + 0.456912
VP0535 lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; Short=SPase II; chromosome 1 CDS552473 510 + 0.441176
VP0589 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS616587 330 + 0.439394
VP0590 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome 1 CDS616938 1857 + 0.472267
VP0591 protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome 1 CDS618809 948 + 0.46097
VP0656 putative fimbrial assembly protein PilESubName: Full=Putative fimbrial assembly protein PilE; chromosome 1 CDS687192 432 - 0.43287
VP0657 putative type IV pilinSubName: Full=Putative type IV pilin; chromosome 1 CDS687685 558 + 0.433692
VP0658 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS688251 627 + 0.422648
VP0660 putative type IV pilinSubName: Full=Putative type IV pilin; chromosome 1 CDS690174 411 + 0.425791
VP0771 polar flagellar FlgMSubName: Full=Polar flagellar FlgM; chromosome 1 CDS808122 318 - 0.468553
VP0804 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS838050 462 - 0.465368
VP0917 ATP-dependent Clp protease, proteolytic subunitRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome 1 CDS953242 603 + 0.45937
VP0942 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome 1 CDS983732 198 + 0.409091
VP1057 TolQ proteinSubName: Full=TolQ protein; chromosome 1 CDS1107355 699 + 0.459227
VP1058 TolR membrane proteinSubName: Full=TolR membrane protein; chromosome 1 CDS1108059 444 + 0.472973
VP1060 TolB proteinRecName: Full=Protein TolB; Flags: Precursor; chromosome 1 CDS1109596 1353 + 0.449372
VP1631 agglutination proteinSubName: Full=Agglutination protein; chromosome 1 CDS1736087 1359 + 0.448124
VP1633 putative RTX toxinSubName: Full=Putative RTX toxin; chromosome 1 CDS1738131 9723 - 0.452227
VP1634 agglutination proteinSubName: Full=Agglutination protein; chromosome 1 CDS1748241 1311 + 0.445461
VP1662 low calcium response proteinSubName: Full=Low calcium response protein; chromosome 1 CDS1780196 2127 - 0.496004
VP1668 ATP synthase in type III secretion systemSubName: Full=ATP synthase in type III secretion system; chromosome 1 CDS1784736 1323 + 0.538171
VP1671 putative translocation protein in type III secretionSubName: Full=Putative translocation protein in type III secretion; chromosome 1 CDS1787842 987 + 0.487335
VP1672 translocation protein in type III secretionSubName: Full=Translocation protein in type III secretion; chromosome 1 CDS1788825 651 + 0.477727
VP1673 translocation protein in type III secretionSubName: Full=Translocation protein in type III secretion; chromosome 1 CDS1789489 267 + 0.475655
VP1674 translocation protein in type III secretionSubName: Full=Translocation protein in type III secretion; chromosome 1 CDS1789752 786 + 0.477099
VP1675 translocation protein in type III secretionSubName: Full=Translocation protein in type III secretion; chromosome 1 CDS1790553 1056 + 0.472538
VP1688 putative type III secretion proteinSubName: Full=Putative type III secretion protein; chromosome 1 CDS1801133 639 - 0.471049
VP1690 putative type III secretion lipoproteinSubName: Full=Putative type III secretion lipoprotein; chromosome 1 CDS1802408 747 - 0.476573
VP1696 putative type III secretion protein YscCSubName: Full=Putative type III secretion protein YscC; chromosome 1 CDS1806256 1899 - 0.50237
VP1713 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS1826161 1416 + 0.451977
VP1752 putative fimbrial biogenesis and twitching motility proteinSubName: Full=Putative fimbrial biogenesis and twitching motility protein; chromosome 1 CDS1865751 726 + 0.449036
VP1998 putative outer membrane protein TolCSubName: Full=Putative outer membrane protein TolC; chromosome 1 CDS2093275 1272 - 0.485063
VP2032 sohB protein, peptidase U7 familySubName: Full=SohB protein, peptidase U7 family; chromosome 1 CDS2129878 1062 - 0.445386
VP2122 putative channel proteinSubName: Full=Putative channel protein; chromosome 1 CDS2229206 639 + 0.475743
VP2152 protease IVRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome 1 CDS2263939 1851 + 0.467855
VP2191 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS2300481 4143 - 0.480087
VP2220 heme exporter protein DSubName: Full=Heme exporter protein D; chromosome 1 CDS2334932 207 - 0.444444
VP2235 polar flagellar assembly protein FlhASubName: Full=Polar flagellar assembly protein FlhA; chromosome 1 CDS2348236 2100 - 0.494286
VP2236 polar flagellar assembly protein FlhBSubName: Full=Polar flagellar assembly protein FlhB; chromosome 1 CDS2350565 1131 - 0.493369
VP2237 polar flagellar assembly protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome 1 CDS2351705 783 - 0.481481
VP2238 polar flagellar assembly protein FliQSubName: Full=Polar flagellar assembly protein FliQ; chromosome 1 CDS2352496 270 - 0.451852
VP2239 polar flagellar assembly protein FliPSubName: Full=Polar flagellar assembly protein FliP; chromosome 1 CDS2352792 870 - 0.483908
VP2241 polar flagellar switch protein FliNSubName: Full=Polar flagellar switch protein FliN; chromosome 1 CDS2354063 411 - 0.484185
VP2245 polar flagellar assembly protein FliJSubName: Full=Polar flagellar assembly protein FliJ; chromosome 1 CDS2358238 444 - 0.475225
VP2246 polar flagellum-specific ATP synthase FliISubName: Full=Polar flagellum-specific ATP synthase FliI; chromosome 1 CDS2358688 1320 - 0.515909
VP2247 polar flagellar assembly protein FliHSubName: Full=Polar flagellar assembly protein FliH; chromosome 1 CDS2360011 801 - 0.480649
VP2249 polar flagellar M-ring protein FliFRecName: Full=Flagellar M-ring protein; chromosome 1 CDS2361930 1743 - 0.497992
VP2250 flagellar hook-basal body complex protein FliERecName: Full=Flagellar hook-basal body complex protein FliE; chromosome 1 CDS2363687 312 - 0.458333
VP2254 polar flagellar protein FlaJSubName: Full=Polar flagellar protein FlaJ; chromosome 1 CDS2368533 411 - 0.467153
VP2410 putative tight adherence TadC-related transmembrane proteinSubName: Full=Putative tight adherence TadC-related transmembrane protein; chromosome 1 CDS2530170 942 - 0.45966
VP2411 putative tight adherence TadB-related transmembrane proteinSubName: Full=Putative tight adherence TadB-related transmembrane protein; chromosome 1 CDS2531114 969 - 0.467492
VP2412 putative pilus assembly proteinSubName: Full=Putative pilus assembly protein; chromosome 1 CDS2532094 1452 - 0.470386
VP2413 putative pilus assembly proteinSubName: Full=Putative pilus assembly protein; chromosome 1 CDS2533558 1209 - 0.36311
VP2419 putative pilus assembly transmembrane proteinSubName: Full=Putative pilus assembly transmembrane protein; chromosome 1 CDS2537293 1464 - 0.454235
VP2420 putative pilus assembly proteinSubName: Full=Putative pilus assembly protein; chromosome 1 CDS2538764 756 - 0.474868
VP2422 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 1 CDS2540909 489 - 0.464213
VP2423 putative fimbrial proteinSubName: Full=Putative fimbrial protein; chromosome 1 CDS2541397 174 - 0.436782
VP2460 preprotein translocase, SecG subunitSubName: Full=Preprotein translocase, SecG subunit; chromosome 1 CDS2582687 339 - 0.445428
VP2523 type IV pilin PilASubName: Full=Type IV pilin PilA; chromosome 1 CDS2663235 420 + 0.454762
VP2524 type IV pilin assembly protein PilBSubName: Full=Type IV pilin assembly protein PilB; chromosome 1 CDS2663664 1686 + 0.446619
VP2525 type IV pilin biogenesis protein PilCSubName: Full=Type IV pilin biogenesis protein PilC; chromosome 1 CDS2665373 1224 + 0.446078
VP2526 type IV prepilin-like proteins leader peptide processing enzymeRecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome 1 CDS2666661 870 + 0.434483
VP2534 signal recognition particle proteinRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome 1 CDS2671786 1383 - 0.46927
VP2573 signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome 1 CDS2718988 900 - 0.448889
VP2614 twitching motility protein PilTSubName: Full=Twitching motility protein PilT; chromosome 1 CDS2757118 1107 - 0.483288
VP2615 twitching motility protein PilTSubName: Full=Twitching motility protein PilT; chromosome 1 CDS2758255 1041 - 0.467819
VP2694 putative type IV prepilin, MshOSubName: Full=Putative type IV prepilin, MshO; chromosome 1 CDS2850125 714 - 0.442577
VP2700 MSHA biogenesis protein MshGSubName: Full=MSHA biogenesis protein MshG; chromosome 1 CDS2853562 1224 - 0.457516
VP2701 MSHA biogenesis protein MshESubName: Full=MSHA biogenesis protein MshE; chromosome 1 CDS2854794 1725 - 0.492754
VP2703 MSHA biogenesis protein MshMSubName: Full=MSHA biogenesis protein MshM; chromosome 1 CDS2857588 846 - 0.449173
VP2704 MSHA biogenesis protein MshLSubName: Full=MSHA biogenesis protein MshL; chromosome 1 CDS2858477 1644 - 0.468978
VP2743 DamX-related proteinSubName: Full=DamX-related protein; chromosome 1 CDS2906652 1518 - 0.462451
VP2746 fimbrial assembly proteinSubName: Full=Fimbrial assembly protein; chromosome 1 CDS2910061 1737 - 0.450202
VP2747 putative fimbrial assembly protein PilPSubName: Full=Putative fimbrial assembly protein PilP; chromosome 1 CDS2911835 516 - 0.482558
VP2748 putative fimbrial assembly protein PilOSubName: Full=Putative fimbrial assembly protein PilO; chromosome 1 CDS2912340 594 - 0.434343
VP2749 putative fimbrial assembly protein PilNSubName: Full=Putative fimbrial assembly protein PilN; chromosome 1 CDS2912926 579 - 0.440415
VP2750 putative fimbrial assembly protein PilMSubName: Full=Putative fimbrial assembly protein PilM; chromosome 1 CDS2913488 1017 - 0.45821
VP2831 protein-transport protein SecBRecName: Full=Protein-export protein SecB; chromosome 1 CDS3000541 465 + 0.455914
VP2857 putative periplasmic protein CpxPSubName: Full=Putative periplasmic protein CpxP; chromosome 1 CDS3024258 513 - 0.473684
VP2928 preprotein translocase, SecE subunitRecName: Full=Protein translocase subunit SecE; chromosome 1 CDS3120245 381 - 0.451444
VP2956 cell division protein FtsYRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome 1 CDS3159531 1218 - 0.479475
VP2959 putative membrane proteinSubName: Full=Putative membrane protein; chromosome 1 CDS3161916 585 - 0.468376
VP3040 Smf proteinSubName: Full=Smf protein; chromosome 1 CDS3246546 1113 - 0.48248
VPA0088 oligogalacturonate lyaseSubName: Full=Oligogalacturonate lyase; chromosome 2 CDS81003 1167 + 0.461868
VPA0152 biopolymer transport protein ExbB-related proteinSubName: Full=Biopolymer transport protein ExbB-related protein; chromosome 2 CDS148366 1368 + 0.482456
VPA0153 TonB system transport protein ExbB2SubName: Full=TonB system transport protein ExbB2; chromosome 2 CDS149733 555 + 0.479279
VPA0154 TonB system transport protein ExbD2SubName: Full=TonB system transport protein ExbD2; chromosome 2 CDS150284 405 + 0.469136
VPA0225 putative efflux pump channel proteinSubName: Full=Putative efflux pump channel protein; chromosome 2 CDS228168 1389 + 0.480202
VPA0262 LfgMSubName: Full=LfgM; chromosome 2 CDS264553 282 - 0.446809
VPA0362 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome 2 CDS355443 1503 - 0.499667
VPA0424 TonB system transport protein ExbD1SubName: Full=TonB system transport protein ExbD1; chromosome 2 CDS416947 414 - 0.442029
VPA0425 ExbB-like proteinSubName: Full=ExbB-like protein; chromosome 2 CDS417357 693 - 0.502164
VPA0482 putative outer membrane cation efflux proteinSubName: Full=Putative outer membrane cation efflux protein; chromosome 2 CDS485440 1380 - 0.481884
VPA0655 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS657915 1044 + 0.483716
VPA0668 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS668887 18255 + 0.471816
VPA0718 putative membrane proteinSubName: Full=Putative membrane protein; chromosome 2 CDS750211 444 - 0.342342
VPA0719 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS750819 285 + 0.385965
VPA0721 rough colony protein RcpASubName: Full=Rough colony protein RcpA; chromosome 2 CDS751917 1344 + 0.447173
VPA0724 TadASubName: Full=TadA; chromosome 2 CDS754909 1266 + 0.457346
VPA0725 putative TadBSubName: Full=Putative TadB; chromosome 2 CDS756216 870 + 0.425287
VPA0726 putative TadCSubName: Full=Putative TadC; chromosome 2 CDS757085 867 + 0.399077
VPA0954 agglutination proteinSubName: Full=Agglutination protein; chromosome 2 CDS995564 1314 + 0.428463
VPA0993 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1043734 2697 - 0.460512
VPA1208 putative protein-export membrane protein SecFRecName: Full=Protein-export membrane protein SecF; chromosome 2 CDS1281621 903 - 0.458472
VPA1209 protein-export membrane protein SecDRecName: Full=Protein translocase subunit SecD; chromosome 2 CDS1282526 1836 - 0.46024
VPA1335 putative type III secretion apparatus proteinSubName: Full=Putative type III secretion apparatus protein; chromosome 2 CDS1408775 234 - 0.376068
VPA1338 putative ATPase YscNSubName: Full=Putative ATPase YscN; chromosome 2 CDS1410089 1263 - 0.416469
VPA1339 putative type III secretion system EscC proteinSubName: Full=Putative type III secretion system EscC protein; chromosome 2 CDS1411351 1464 - 0.406421
VPA1342 putative Type III secretion protein Spa24SubName: Full=Putative Type III secretion protein Spa24; chromosome 2 CDS1413731 732 - 0.389344
VPA1349 putative Type III secretion protein Spa33SubName: Full=Putative Type III secretion protein Spa33; chromosome 2 CDS1419513 216 - 0.393519
VPA1354 putative type III secretion system EscU proteinSubName: Full=Putative type III secretion system EscU protein; chromosome 2 CDS1422554 1059 - 0.374882
VPA1355 putative type III secretion system EscV proteinSubName: Full=Putative type III secretion system EscV protein; chromosome 2 CDS1423630 1884 - 0.386412
VPA1357 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1426234 4869 - 0.535223
VPA1504 CsuDSubName: Full=CsuD; chromosome 2 CDS1608101 2409 - 0.474056
VPA1505 CsuCSubName: Full=CsuC; chromosome 2 CDS1610536 780 - 0.375641
VPA1532 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1634236 441 - 0.471655
VPA1533 putative flagellum-specific ATP synthaseSubName: Full=Putative flagellum-specific ATP synthase; chromosome 2 CDS1634692 1350 - 0.513333
VPA1534 putative flagellar assembly proteinSubName: Full=Putative flagellar assembly protein; chromosome 2 CDS1636034 756 - 0.494709
VPA1536 putative flagellar M-ring proteinRecName: Full=Flagellar M-ring protein; chromosome 2 CDS1637775 1755 - 0.499715
VPA1537 putative flagellar hook-basal body complex proteinRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome 2 CDS1639533 357 - 0.47619
VPA1541 flagellar motor switch proteinSubName: Full=Flagellar motor switch protein; chromosome 2 CDS1643461 372 + 0.478495
VPA1542 putative flagellar assembly proteinSubName: Full=Putative flagellar assembly protein; chromosome 2 CDS1643851 759 + 0.479578
VPA1543 flagellar biosynthetic proteinSubName: Full=Flagellar biosynthetic protein; chromosome 2 CDS1644622 270 + 0.455556
VPA1544 putative flagellar biosynthetic protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome 2 CDS1644891 777 + 0.486486
VPA1545 flagellar biosynthetic proteinSubName: Full=Flagellar biosynthetic protein; chromosome 2 CDS1645664 1128 + 0.45922
VPA1546 flagellar biosynthesis proteinSubName: Full=Flagellar biosynthesis protein; chromosome 2 CDS1646823 2091 + 0.477284
VPA1551 LafCSubName: Full=LafC; chromosome 2 CDS1652994 387 + 0.449612
VPA1579 putative outer membrane proteinSubName: Full=Putative outer membrane protein; chromosome 2 CDS1676409 1644 + 0.506083
VPA1600 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1698719 642 - 0.456386