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2024-05-03 11:36:37

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Vibrio parahaemolyticus RIMD 2210633, O3:K6

Number of genes found: 150

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0003 inner membrane protein, 60 kDachromosome 1 CDS2389 1623 - 0.476278
VP0098 TatA proteinchromosome 1 CDS108027 246 + 0.406504
VP0099 conserved hypothetical proteinchromosome 1 CDS108276 399 + 0.451128
VP0100 conserved hypothetical proteinchromosome 1 CDS108743 741 + 0.473684
VP0132 general secretion pathway protein Cchromosome 1 CDS142696 924 + 0.467532
VP0133 general secretion pathway protein D precursorchromosome 1 CDS143656 2028 + 0.461538
VP0134 general secretion pathway protein Echromosome 1 CDS145683 1503 + 0.500333
VP0135 general secretion pathway protein Fchromosome 1 CDS147185 1218 + 0.478654
VP0136 general secretion pathway protein Gchromosome 1 CDS148464 444 + 0.457207
VP0137 general secretion pathway protein Hchromosome 1 CDS148938 597 + 0.448911
VP0138 general secretion pathway protein Ichromosome 1 CDS149581 330 + 0.481818
VP0139 general secretion pathway protein Jchromosome 1 CDS149897 684 + 0.5
VP0140 general secretion pathway protein Kchromosome 1 CDS150573 1011 + 0.470821
VP0141 general secretion pathway protein Lchromosome 1 CDS151540 1215 + 0.502058
VP0142 general secretion pathway protein Mchromosome 1 CDS152759 495 + 0.474747
VP0164 TonB system transport protein ExbD2chromosome 1 CDS176883 408 - 0.480392
VP0165 TonB system transport protein ExbB2chromosome 1 CDS177316 528 - 0.484848
VP0166 putative TolRchromosome 1 CDS177853 1362 - 0.454479
VP0277 preprotein translocase, SecY subunitchromosome 1 CDS276631 1335 + 0.44794
VP0415 putative general secretion pathway protein Achromosome 1 CDS414714 1620 + 0.482716
VP0425 outer membrane protein TolCchromosome 1 CDS428576 1329 - 0.457487
VP0467 SecA proteinchromosome 1 CDS470210 2727 + 0.456912
VP0535 lipoprotein signal peptidasechromosome 1 CDS552473 510 + 0.441176
VP0589 conserved hypothetical proteinchromosome 1 CDS616587 330 + 0.439394
VP0590 protein-export membrane protein SecDchromosome 1 CDS616938 1857 + 0.472267
VP0591 protein-export membrane protein SecFchromosome 1 CDS618809 948 + 0.46097
VP0656 putative fimbrial assembly protein PilEchromosome 1 CDS687192 432 - 0.43287
VP0657 putative type IV pilinchromosome 1 CDS687685 558 + 0.433692
VP0658 hypothetical proteinchromosome 1 CDS688251 627 + 0.422648
VP0660 putative type IV pilinchromosome 1 CDS690174 411 + 0.425791
VP0771 polar flagellar FlgMchromosome 1 CDS808122 318 - 0.468553
VP0804 conserved hypothetical proteinchromosome 1 CDS838050 462 - 0.465368
VP0917 ATP-dependent Clp protease, proteolytic subunitchromosome 1 CDS953242 603 + 0.45937
VP0942 putative fimbrial proteinchromosome 1 CDS983732 198 + 0.409091
VP1057 TolQ proteinchromosome 1 CDS1107355 699 + 0.459227
VP1058 TolR membrane proteinchromosome 1 CDS1108059 444 + 0.472973
VP1060 TolB proteinchromosome 1 CDS1109596 1353 + 0.449372
VP1631 agglutination proteinchromosome 1 CDS1736087 1359 + 0.448124
VP1633 putative RTX toxinchromosome 1 CDS1738131 9723 - 0.452227
VP1634 agglutination proteinchromosome 1 CDS1748241 1311 + 0.445461
VP1662 low calcium response proteinchromosome 1 CDS1780196 2127 - 0.496004
VP1668 ATP synthase in type III secretion systemchromosome 1 CDS1784736 1323 + 0.538171
VP1671 putative translocation protein in type III secretionchromosome 1 CDS1787842 987 + 0.487335
VP1672 translocation protein in type III secretionchromosome 1 CDS1788825 651 + 0.477727
VP1673 translocation protein in type III secretionchromosome 1 CDS1789489 267 + 0.475655
VP1674 translocation protein in type III secretionchromosome 1 CDS1789752 786 + 0.477099
VP1675 translocation protein in type III secretionchromosome 1 CDS1790553 1056 + 0.472538
VP1688 putative type III secretion proteinchromosome 1 CDS1801133 639 - 0.471049
VP1690 putative type III secretion lipoproteinchromosome 1 CDS1802408 747 - 0.476573
VP1696 putative type III secretion protein YscCchromosome 1 CDS1806256 1899 - 0.50237
VP1713 conserved hypothetical proteinchromosome 1 CDS1826161 1416 + 0.451977
VP1752 putative fimbrial biogenesis and twitching motility proteinchromosome 1 CDS1865751 726 + 0.449036
VP1998 putative outer membrane protein TolCchromosome 1 CDS2093275 1272 - 0.485063
VP2032 sohB protein, peptidase U7 familychromosome 1 CDS2129878 1062 - 0.445386
VP2122 putative channel proteinchromosome 1 CDS2229206 639 + 0.475743
VP2152 protease IVchromosome 1 CDS2263939 1851 + 0.467855
VP2191 hypothetical proteinchromosome 1 CDS2300481 4143 - 0.480087
VP2220 heme exporter protein Dchromosome 1 CDS2334932 207 - 0.444444
VP2235 polar flagellar assembly protein FlhAchromosome 1 CDS2348236 2100 - 0.494286
VP2236 polar flagellar assembly protein FlhBchromosome 1 CDS2350565 1131 - 0.493369
VP2237 polar flagellar assembly protein FliRchromosome 1 CDS2351705 783 - 0.481481
VP2238 polar flagellar assembly protein FliQchromosome 1 CDS2352496 270 - 0.451852
VP2239 polar flagellar assembly protein FliPchromosome 1 CDS2352792 870 - 0.483908
VP2241 polar flagellar switch protein FliNchromosome 1 CDS2354063 411 - 0.484185
VP2245 polar flagellar assembly protein FliJchromosome 1 CDS2358238 444 - 0.475225
VP2246 polar flagellum-specific ATP synthase FliIchromosome 1 CDS2358688 1320 - 0.515909
VP2247 polar flagellar assembly protein FliHchromosome 1 CDS2360011 801 - 0.480649
VP2249 polar flagellar M-ring protein FliFchromosome 1 CDS2361930 1743 - 0.497992
VP2250 flagellar hook-basal body complex protein FliEchromosome 1 CDS2363687 312 - 0.458333
VP2254 polar flagellar protein FlaJchromosome 1 CDS2368533 411 - 0.467153
VP2410 putative tight adherence TadC-related transmembrane proteinchromosome 1 CDS2530170 942 - 0.45966
VP2411 putative tight adherence TadB-related transmembrane proteinchromosome 1 CDS2531114 969 - 0.467492
VP2412 putative pilus assembly proteinchromosome 1 CDS2532094 1452 - 0.470386
VP2413 putative pilus assembly proteinchromosome 1 CDS2533558 1209 - 0.36311
VP2419 putative pilus assembly transmembrane proteinchromosome 1 CDS2537293 1464 - 0.454235
VP2420 putative pilus assembly proteinchromosome 1 CDS2538764 756 - 0.474868
VP2422 hypothetical proteinchromosome 1 CDS2540909 489 - 0.464213
VP2423 putative fimbrial proteinchromosome 1 CDS2541397 174 - 0.436782
VP2460 preprotein translocase, SecG subunitchromosome 1 CDS2582687 339 - 0.445428
VP2523 type IV pilin PilAchromosome 1 CDS2663235 420 + 0.454762
VP2524 type IV pilin assembly protein PilBchromosome 1 CDS2663664 1686 + 0.446619
VP2525 type IV pilin biogenesis protein PilCchromosome 1 CDS2665373 1224 + 0.446078
VP2526 type IV prepilin-like proteins leader peptide processing enzymechromosome 1 CDS2666661 870 + 0.434483
VP2534 signal recognition particle proteinchromosome 1 CDS2671786 1383 - 0.46927
VP2573 signal peptidase Ichromosome 1 CDS2718988 900 - 0.448889
VP2614 twitching motility protein PilTchromosome 1 CDS2757118 1107 - 0.483288
VP2615 twitching motility protein PilTchromosome 1 CDS2758255 1041 - 0.467819
VP2694 putative type IV prepilin, MshOchromosome 1 CDS2850125 714 - 0.442577
VP2700 MSHA biogenesis protein MshGchromosome 1 CDS2853562 1224 - 0.457516
VP2701 MSHA biogenesis protein MshEchromosome 1 CDS2854794 1725 - 0.492754
VP2703 MSHA biogenesis protein MshMchromosome 1 CDS2857588 846 - 0.449173
VP2704 MSHA biogenesis protein MshLchromosome 1 CDS2858477 1644 - 0.468978
VP2743 DamX-related proteinchromosome 1 CDS2906652 1518 - 0.462451
VP2746 fimbrial assembly proteinchromosome 1 CDS2910061 1737 - 0.450202
VP2747 putative fimbrial assembly protein PilPchromosome 1 CDS2911835 516 - 0.482558
VP2748 putative fimbrial assembly protein PilOchromosome 1 CDS2912340 594 - 0.434343
VP2749 putative fimbrial assembly protein PilNchromosome 1 CDS2912926 579 - 0.440415
VP2750 putative fimbrial assembly protein PilMchromosome 1 CDS2913488 1017 - 0.45821
VP2831 protein-transport protein SecBchromosome 1 CDS3000541 465 + 0.455914
VP2857 putative periplasmic protein CpxPchromosome 1 CDS3024258 513 - 0.473684
VP2928 preprotein translocase, SecE subunitchromosome 1 CDS3120245 381 - 0.451444
VP2956 cell division protein FtsYchromosome 1 CDS3159531 1218 - 0.479475
VP2959 putative membrane proteinchromosome 1 CDS3161916 585 - 0.468376
VP3040 Smf proteinchromosome 1 CDS3246546 1113 - 0.48248
VPA0088 oligogalacturonate lyasechromosome 2 CDS81003 1167 + 0.461868
VPA0152 biopolymer transport protein ExbB-related proteinchromosome 2 CDS148366 1368 + 0.482456
VPA0153 TonB system transport protein ExbB2chromosome 2 CDS149733 555 + 0.479279
VPA0154 TonB system transport protein ExbD2chromosome 2 CDS150284 405 + 0.469136
VPA0225 putative efflux pump channel proteinchromosome 2 CDS228168 1389 + 0.480202
VPA0262 LfgMchromosome 2 CDS264553 282 - 0.446809
VPA0362 putative outer membrane proteinchromosome 2 CDS355443 1503 - 0.499667
VPA0424 TonB system transport protein ExbD1chromosome 2 CDS416947 414 - 0.442029
VPA0425 ExbB-like proteinchromosome 2 CDS417357 693 - 0.502164
VPA0482 putative outer membrane cation efflux proteinchromosome 2 CDS485440 1380 - 0.481884
VPA0655 hypothetical proteinchromosome 2 CDS657915 1044 + 0.483716
VPA0668 hypothetical proteinchromosome 2 CDS668887 18255 + 0.471816
VPA0718 putative membrane proteinchromosome 2 CDS750211 444 - 0.342342
VPA0719 hypothetical proteinchromosome 2 CDS750819 285 + 0.385965
VPA0721 rough colony protein RcpAchromosome 2 CDS751917 1344 + 0.447173
VPA0724 TadAchromosome 2 CDS754909 1266 + 0.457346
VPA0725 putative TadBchromosome 2 CDS756216 870 + 0.425287
VPA0726 putative TadCchromosome 2 CDS757085 867 + 0.399077
VPA0954 agglutination proteinchromosome 2 CDS995564 1314 + 0.428463
VPA0993 hypothetical proteinchromosome 2 CDS1043734 2697 - 0.460512
VPA1208 putative protein-export membrane protein SecFchromosome 2 CDS1281621 903 - 0.458472
VPA1209 protein-export membrane protein SecDchromosome 2 CDS1282526 1836 - 0.46024
VPA1335 putative type III secretion apparatus proteinchromosome 2 CDS1408775 234 - 0.376068
VPA1338 putative ATPase YscNchromosome 2 CDS1410089 1263 - 0.416469
VPA1339 putative type III secretion system EscC proteinchromosome 2 CDS1411351 1464 - 0.406421
VPA1342 putative Type III secretion protein Spa24chromosome 2 CDS1413731 732 - 0.389344
VPA1349 putative Type III secretion protein Spa33chromosome 2 CDS1419513 216 - 0.393519
VPA1354 putative type III secretion system EscU proteinchromosome 2 CDS1422554 1059 - 0.374882
VPA1355 putative type III secretion system EscV proteinchromosome 2 CDS1423630 1884 - 0.386412
VPA1357 hypothetical proteinchromosome 2 CDS1426234 4869 - 0.535223
VPA1504 CsuDchromosome 2 CDS1608101 2409 - 0.474056
VPA1505 CsuCchromosome 2 CDS1610536 780 - 0.375641
VPA1532 hypothetical proteinchromosome 2 CDS1634236 441 - 0.471655
VPA1533 putative flagellum-specific ATP synthasechromosome 2 CDS1634692 1350 - 0.513333
VPA1534 putative flagellar assembly proteinchromosome 2 CDS1636034 756 - 0.494709
VPA1536 putative flagellar M-ring proteinchromosome 2 CDS1637775 1755 - 0.499715
VPA1537 putative flagellar hook-basal body complex proteinchromosome 2 CDS1639533 357 - 0.47619
VPA1541 flagellar motor switch proteinchromosome 2 CDS1643461 372 + 0.478495
VPA1542 putative flagellar assembly proteinchromosome 2 CDS1643851 759 + 0.479578
VPA1543 flagellar biosynthetic proteinchromosome 2 CDS1644622 270 + 0.455556
VPA1544 putative flagellar biosynthetic protein FliRchromosome 2 CDS1644891 777 + 0.486486
VPA1545 flagellar biosynthetic proteinchromosome 2 CDS1645664 1128 + 0.45922
VPA1546 flagellar biosynthesis proteinchromosome 2 CDS1646823 2091 + 0.477284
VPA1551 LafCchromosome 2 CDS1652994 387 + 0.449612
VPA1579 putative outer membrane proteinchromosome 2 CDS1676409 1644 + 0.506083
VPA1600 hypothetical proteinchromosome 2 CDS1698719 642 - 0.456386