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2024-05-06 09:31:45

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

Number of genes found: 131

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
HCM1.21c hypothetical proteinpHCM1 CDS6329 309 - 0.462783
HCM1.262 putative membrane proteinpHCM1 CDS192297 3990 - 0.480952
HCM1.276 putative peptidasepHCM1 CDS209530 1182 + 0.505922
HCM2.0051c putative phage tail proteinpHCM2 CDS37667 2553 - 0.46181
HCM2.0113c hypothetical proteinpHCM2 CDS88047 927 - 0.508091
STY0056 lipoprotein signal peptidasechromosome CDS56686 501 + 0.516966
STY0156 preprotein translocase SecA subunitchromosome CDS160107 2706 + 0.537694
STY0164 protein transport protein HofCchromosome CDS168274 1203 - 0.541978
STY0165 protein transport protein HofBchromosome CDS169466 1386 - 0.553391
STY0166 prepilin peptidase dependent protein D precursorchromosome CDS170861 438 - 0.534247
STY0352 probable secreted proteinchromosome CDS360350 408 - 0.465686
STY0405 puative autotransporter/virulence factorchromosome CDS416740 2886 + 0.452529
STY0444 putative membrane proteinchromosome CDS454176 333 + 0.51952
STY0445 protein-export membrane protein SecDchromosome CDS454536 1848 + 0.547078
STY0446 protein-export membrane protein SecFchromosome CDS456394 972 + 0.545267
STY0490 ATP-dependent clp protease proteolytic subunitchromosome CDS495358 624 + 0.511218
STY0546 putative membrane proteinchromosome CDS554197 453 - 0.602649
STY0791 TolQ proteinchromosome CDS788215 693 + 0.519481
STY0792 tolR proteinchromosome CDS788911 429 + 0.51049
STY0794 tolB protein precursorchromosome CDS790658 1293 + 0.559938
STY1045 putative bacteriophage proteinchromosome CDS1028101 261 + 0.421456
STY1210 flagella synthesis protein FlgNchromosome CDS1166894 423 - 0.541371
STY1211 negative regulator of flagellin synthesis (anti-sigma factor)chromosome CDS1167321 294 - 0.510204
STY1303 putative membrane proteinchromosome CDS1263048 648 + 0.50463
STY1334 putative proteasechromosome CDS1291577 1047 + 0.542502
STY1539 putative membrane proteinchromosome CDS1493553 666 - 0.531532
STY1805 putative exported proteinchromosome CDS1724211 486 - 0.493827
STY1819 protease IVchromosome CDS1738487 1857 + 0.558428
STY2050 hypothetical proteinchromosome CDS1915387 555 - 0.481081
STY2122 flagellar biosynthesis protein FlhAchromosome CDS1973172 2079 - 0.560847
STY2176 flagellar hook-basal body complex protein FliEchromosome CDS2019614 315 - 0.546032
STY2177 flagellar basal-body M-ring proteinchromosome CDS2020145 1683 + 0.568033
STY2179 flagellar assembly protein FliHchromosome CDS2022808 708 + 0.607345
STY2180 flagellum-specific ATP synthasechromosome CDS2023515 1371 + 0.598833
STY2181 flagellar FliJ proteinchromosome CDS2024907 444 + 0.513514
STY2185 flagellar motor switch protein FliNchromosome CDS2028154 414 + 0.545894
STY2187 flagellar biosynthetic protein FliPchromosome CDS2028944 738 + 0.536585
STY2188 flagellar biosynthetic protein FliQchromosome CDS2029691 270 + 0.514815
STY2189 flagellar biosynthetic protein FliRchromosome CDS2029969 795 + 0.509434
STY2402 putative lipoproteinchromosome CDS2234412 1437 - 0.580376
STY2828 signal peptidase Ichromosome CDS2689868 975 - 0.533333
STY2864 signal recognition particle proteinchromosome CDS2733112 1362 - 0.549192
STY2876 putative type I secretion proteinchromosome CDS2754433 1410 + 0.569504
STY2907 putative membrane proteinchromosome CDS2788477 432 + 0.578704
STY3331 biopolymer transport ExbD proteinchromosome CDS3175259 426 - 0.502347
STY3332 biopolymer transport ExbB proteinchromosome CDS3175691 735 - 0.555102
STY3738 preprotein translocase SecE subunitchromosome CDS3588809 384 - 0.554688
STY3811 extracytoplasmic stress protein for protein-mediated toxicitieschromosome CDS3674335 501 - 0.506986
STY3938 putative membrane proteinchromosome CDS3802080 1647 - 0.540984
STY4392 conserved hypothetical proteinchromosome CDS4252698 1125 + 0.536
STY4452 putative exported proteinchromosome CDS4322993 633 + 0.341232
STY4453 putative integral membrane proteinchromosome CDS4323622 1389 + 0.365011
STY4456 putative type-I secretion proteinchromosome CDS4325000 1308 + 0.365443
STY4562 hypothetical proteinchromosome CDS4442121 2091 + 0.470588
bcfA fimbrial subunitchromosome CDS24473 543 + 0.521179
bcfB fimbrial chaperonechromosome CDS25116 687 + 0.512373
bcfD fimbrial subunitchromosome CDS28429 1008 + 0.502976
bcfE fimbrial subunitchromosome CDS29437 546 + 0.47619
bcfF fimbrial subunitchromosome CDS29998 519 + 0.558767
bcfG fimbrial chaperonechromosome CDS30509 705 + 0.541844
ccmD1 heme exporter protein D1chromosome CDS2308342 213 - 0.694836
ccmD2 heme exporter protein D2chromosome CDS3832194 213 + 0.694836
fimA type-1 fimbrial protein, a chain precursorchromosome CDS596077 555 + 0.54955
fimC fimbrial chaperone proteinchromosome CDS597283 693 + 0.494949
fimD outer membrane usher protein FimD precursorchromosome CDS598006 2613 + 0.558362
fimF fimbria-like protein FimF precursor; hypothetical fimbrial-like protein in fimZ 5' regionchromosome CDS601650 519 + 0.543353
flhB flagellar biosynthetic protein FlhBchromosome CDS1975243 1152 - 0.559028
fliS flagellar protein FliSchromosome CDS2014368 408 + 0.497549
ftsY cell division proteinchromosome CDS4105776 1476 + 0.550813
hofQ type II secretion system proteinchromosome CDS4186144 1239 + 0.567393
hopD Type III leader peptidasechromosome CDS4232125 468 - 0.523504
invA possible secretory protein (associated with virulence)chromosome CDS2890400 2058 - 0.455782
invG secretory protein (associated with virulence)chromosome CDS2893597 1689 - 0.463588
orgAb oxygen-regulated invasion protein; cell invasion proteinchromosome CDS2865811 672 - 0.449405
pilQ nucleotide-binding proteinchromosome CDS4429110 1716 + 0.545455
pilR putative membrane proteinchromosome CDS4430822 1086 + 0.563536
pilT Type II secretion, ATP-binding, proteinchromosome CDS3115630 981 - 0.574924
pilU prepilin peptidasechromosome CDS4433025 663 + 0.536953
pilV prepilinchromosome CDS4433684 1308 + 0.502294
prgK pathogenicity 1 island effector proteinchromosome CDS2867010 759 - 0.459816
prlA preprotein translocase subunitchromosome CDS4242144 1332 + 0.495495
safB periplasmic fimbrial chaperone proteinchromosome CDS342869 741 + 0.479082
safC outer-membrane fimbrial usher proteinchromosome CDS343633 2511 + 0.543608
sapB putative autotransporterchromosome CDS3963524 3324 - 0.525271
secB protein-export protein SecBchromosome CDS3952633 468 + 0.50641
secG protein-export membrane proteinchromosome CDS3316375 333 - 0.510511
sefB fimbrial chaperone proteinchromosome CDS4697576 753 + 0.288181
sefC outer membrane fimbrial usher proteinchromosome CDS4698333 2517 + 0.357171
sipC pathogenicity island 1 effector proteinchromosome CDS2879857 1230 - 0.474797
spaI secretory apparatus ATP synthase (associated with virulence)chromosome CDS2888677 1296 - 0.54321
spaO surface presentation of antigens protein (associated with type III secretion and virulence)chromosome CDS2886335 912 - 0.526316
spaP secretory protein (associated with virulence)chromosome CDS2885671 675 - 0.414815
spaQ secretory protein (associated with virulence)chromosome CDS2885385 261 - 0.467433
spaR secretory protein (associated with virulence)chromosome CDS2884590 792 - 0.497475
spaS secretory protein (associated with virulence)chromosome CDS2883533 1071 - 0.431373
spiA putative outer membrane secretory proteinchromosome CDS1644774 1494 - 0.423025
ssaJ putative pathogenicity island lipoproteinchromosome CDS1635704 750 - 0.425333
ssaN putative type III secretion ATP synthasechromosome CDS1629738 1302 - 0.511521
ssaQ putative type III secretion proteinchromosome CDS1628054 969 - 0.455108
ssaS putative type III secretion proteinchromosome CDS1627076 267 - 0.41573
ssaT putative type III secretion proteinchromosome CDS1626296 780 - 0.39359
ssaU putative type III secretion proteinchromosome CDS1625241 1059 - 0.396601
ssaV putative type III secretion proteinchromosome CDS1631029 2046 - 0.460411
staB chaperone protein EcpD precursorchromosome CDS215914 735 - 0.468027
staC outer membrane usher protein HtrE precursorchromosome CDS213248 2592 - 0.512731
stbA probable fimbrial proteinchromosome CDS384266 537 - 0.478585
stbB fimbrial chaperone proteinchromosome CDS383443 762 - 0.448819
stbC outer membrane fimbrial usher proteinchromosome CDS380898 2562 - 0.539422
stbE fimbrial chaperone proteinchromosome CDS378844 759 - 0.469038
stcB putative fimbrial chaperone proteinchromosome CDS2211940 684 - 0.399123
stcC putative outer membrane usher proteinchromosome CDS2209437 2490 - 0.457831
stdA probable fimbrial proteinchromosome CDS3048066 582 - 0.524055
stdB probable outer membrane fimbrial usher proteinchromosome CDS3045457 2490 - 0.610442
stdC probable fimbrial chaperone proteinchromosome CDS3044673 744 - 0.583333
steB outer membrane usher proteinchromosome CDS2949638 2700 + 0.553704
steC periplasmic fimbrial chaperonechromosome CDS2952350 774 + 0.546512
steF fimbrial subunitchromosome CDS2954131 537 + 0.482309
stgA probable fimbrial subunit proteinchromosome CDS3780596 576 + 0.508681
stgB fimbrial chaperone proteinchromosome CDS3781269 699 + 0.410587
sthA putative fimbrial proteinchromosome CDS4804460 546 - 0.503663
sthB putative fimbrial chaperone proteinchromosome CDS4803706 684 - 0.459064
sthD putative fimbrial subunitchromosome CDS4800549 558 - 0.496416
tatA sec-independent protein translocase proteinchromosome CDS3438745 255 - 0.454902
tatB sec-independent protein translocase proteinchromosome CDS3438193 549 - 0.544627
tatC sec-independent protein translocase proteinchromosome CDS3437411 780 - 0.508974
tatE sec-independent protein translocase protein TatEchromosome CDS679335 204 + 0.485294
tolC outer membrane protein TolC precursorchromosome CDS3206069 1476 + 0.522358
trhC plasmid transfer proteinpHCM1 CDS51248 2682 + 0.419463
trhF putative pilin maturation proteinpHCM1 CDS70694 513 + 0.393762
yrfC putative membrane proteinchromosome CDS4184842 540 + 0.583333
yscR putative type III secretion proteinchromosome CDS1627339 648 - 0.424383