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# Dehalococcoides sp. CBDB1, CBDB1

>cbdbA1281 conserved hypothetical protein
MNIRLVWTVFTTLLEGVGIAFLGLWLLPQIDFQLPLWVILLAEAVLLVSS
VYFYHVGTVTLDQKPRTGSETIIGSSAVVVESVNPKGMIRLDGELWEAVT
SGVSIPRGGEVVVVGRDKMRLWVKPK
>cbdbA1306 hypothetical protein
MRNLITISKRLRSQQGQALVIALIFLAIGALTLPPLMMLMGSALVQGTTF
ENRTASLYAADAGVEQAIWYLDPANSPLISGGLPMHTGESRTLPGMSIDG
RTVSVTLAYLAEDTYQIMSTSVSSTETISITTVVGETFNNYTDIMTHVIT
SQGDYTIQGGQASVTPDTGDNAPIANYDGPWPGANELSAFYYVNTTPYAS
ATLNVTNYPTGVPEILRLGTLDIVATANAVYTLEGDIYITGDTLIGMTGS
NFTLDLNGHSIYVKSNTAGNQYALRIGGKCTLIGSGSIIAEGNIEFKPNL
ATNLSDYVFVLSVNGKTYMQPNGNFYGTLAGSTEVYLQNGSVTYSSPFDE
YGNYKIDFPGSGLSHFWGIITWSIS
>cbdbA1307 hypothetical protein
MIGIKKLIKGEKGASLAIALIFLAIGAIMIPPLLMLIGSGLKQGTTFEDR
TGAIYSSDAGVEWVINILKTGGEGVTDAYGNIGLPNEQDSIRIYNLSDLN
GSTVEVTLTYHDVGSYYNVISTASLNGKSITTQATLKYQLGGGSVFDNAI
TSLDGDVKLTGSSSVISDPRNPPGAMVYSGGELILTGSSFIEGNVYADDG
IDLGWSTPITGDAVTPADINRPGNISGTVTTGAAPQLPNVLTDAEIAAIV
TDIQNETAFAAFSPGAITRSSDWNIKYYPVPASIYYTAERIQRDLNINTD
TPLTFKSSVYIGRNFNHNNSSTVTFEGPVVILGDLKVNGSGHIIFKNSVW
VGGNVDLGGSVNVEFEGKVYVGGDCKWASGGTVPLGDTLYVAGDLKTTGS
REVDLSGSIFVGGDLDLAGSSQIIGAETVVVLGDIDLTGSTKLTDVNEIP
FILSPTGDFDMSGSSWVSAVVYAPQADVSLNGGVNLYGAVVSNSLTITGS
SQIQYPTSLSTRTDLPGGGDSNATLDILTWTVLGG
>cbdbA1015 putative inner membrane protein, 60 kDa
MDIGAIWDLIILSPMINGMVWLSHNLWGSFGLTVIVLTVVIRLALWPLNR
KQLTATKKMQEITVHMDALKKKHGNDRQKLAEEQMKLYKESGVSTTGCLV
PMLIQFPIWIALYQAIVRVLAVTPEDFMNLSNHLYSWPVVYETLPLSNNF
LWMDLSRSDFVLALLVGLGMFVQQKMSTPKAINQQQAAQSQMLSFMMPFM
FFFFSLSFPSGLAFYWFVSAVVGIIMQYFITGWGQLEPIAEKVISYFRGG
RQVRSGSIYKTEKKAATPAGQLSDSSTKGKQMEGSIDEKGRDERQDSGGS
YKTGSKSTKRKPKRS
>cbdbA1313 type IV prepilin leader peptidase family protein
MLISWIIFFFILGAILGSFINMLSDRLPAKKSIITPGSGCDVCGKRLGIA
DLIPIFSYIFLKGRCRYCGAGIPQRALWVEIATACLFGLFWVMLGPSVEL
GISLLYLCVFITLFVIDLEKGLILNVIIYPFMVLALLLSPLYLQGDGLLA
NLSSSFFGGLTGFGLFLLIYIASRGGMGEGDIKMAGFIGLVCGFPNIFVA
IFAGIVLGGLAAAGLMLSGKRRKGQTIPFGPFLAVGAVTAMLFGSQIMEW
YLALA
>cbdbA1414 membrane transporter, MarC family
MSDFWNNILLTFVPLFIVVDAVGNLPFVISITDQSTAEERKKVVNLAVIT
ASLLGLLFLFMGKLVLDLMGISVGAFAIAGGLILLLFAIRYMTSGHMVEV
IKEEMVAVVPIGTPLTMGPATITTLILLVNQFPLYIVLISFALNMLATWL
IFKSSQWFVHYMGRGGLKAMSRIFSLFLAAIAISMIIKGLRLEEILGAVA
GGG
>cbdbA1309 putative type IV pilus assembly family protein
MAKTTTLYIEDAEIKVLVNNGKKIEKWASSPLETGLVIDGLIQDETKVSE
AIKTLFSREKIPAGRVVAAMSGLKSIFRIITLPAVPKNILDEAIKNEANR
VIPTPMDQNYLSYQILPSAQSETKVFIVAHPKNTTDSVVRTINKAGLRLE
VLDIAPLALCRCANLEKVIIVSNWLDNVDIAIIIDRIPQVIRSLSLPIES
QSLAERISTIAEELARTITFYNSSHAESLLDESVPVLVSGELAKEPDSWP
LLLDELSNQISILPSPFVASEDFDPSVYIVNMGMAIRELPASTDNHNSLI
NFNAMPGFYKPKGTSPVAILVPTVIVLLVGGLVWGWFYIDDMKQKNNTLE
PQVQVQETALIQKRAELSAINIQLSNTQKSLTSIEPVVTVLNDMLWDMYQ
GRETITGDYKAIYNLHSSNIGFYTIDYGPYNGYKIVTKTNVLTIRGYGLT
KTAILEYAGVLRGSNRWQDVIITEIVKDISDSVSTYDFEIVLIN
>cbdbA675 putative DNA processing protein DprA
MPVLEFQKNKMQNQDNNYAIGFSYINGVGRVRLNLLDNYFGNLENAWHAG
KEALISAGLDNTLAENIVAHRPKIDLSKTLETLKRHDIQTYAHTDKDYPA
SLRQIHDYPPLIFVKGQLLPADELCLGIVGTRQPTVYGKLVTEELAESLA
RAGLTIVSGLARGIDTVAHTAALKAGGRSIAVFGCGLDIIYPSENHSLAR
QIAENGALISEHPPGIRPRPEFFPRRNRILSGLCRGILVTEAGENSGAVI
TANYALEQNREIFAVPGSILSPSSLGTNRLIQEGAKLVSSVKDVLEELNI
SLFSEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGT
LAIMELKGQVRSTGGMNYVRTREKKEIYQLEMN
>cbdbA1305 putative type II secretion system protein
MRRFILKYSGKQAGFTLVEMLVALAITGLIMAGLTTSVFQLFTVTQRSND
HMTIIRHLDIVNSWLSNDIQMANIQPEWDPNTHSLTINQTRALADPTDPE
SNVTDYIVTYTYNPITGTLTRTELRLFDNSTQTSLIAEYVSGILFEDELA
PNEISGAVDIKITITLHTQTEDRLLHIKPRISST
>cbdbA1599 hypothetical membrane protein
MMSSVTQYPATLSVDYQDKPRDRVNVAFRLLMIIPVAIILSLISGGSYKY
TIDHITYSAGNAGGIIILATVLMILFQQRYPKWWFDWNLALSRFSYRFIS
YLTLLRDEYPSTDEEQSVHLNLVYPNVKTDLNRWMPLFKWFLAIPHYILL
AFLGFAAFICTIFAWFTIVFTGKYPKSLFDFVVGVLRWGLRVSAYSSLLI
TDIYPPFSLEP
>cbdbA666 clpP, ATP-dependent Clp protease, proteolytic subunit ClpP
MISPENVVPMVIESSARGERAFDIYSLLLKERIIFLGSQINDQVANLVIA
QLLFLDREDPDKDISLYIHSPGGVISAGLAMYDTMQLIRPKVSTICVGVA
ASMATVLLCAGAKGKRYALPNATIHMHQAMGGAQGQASDIEIAAREIMRQ
QDILRNILVKHTGQTMEKIVHDSDRDYYLSAQQAVEYGLIDEILQKPENK
>cbdbA1302 gspE, type II secretion system protein GspE
MLQNKVKDTELRKLVSKRVADYLSSHNYQVESDVKITGQSGIEHIFDIVA
RRNDGFTARTMAVCIILGSNQEEESSSIFNFANKAFDTGINERILIAIPK
LTPETRNLAEKQRIKVFDEDRLEDLLITSTKRPNRLEGMNNISSREDLIK
ALTNLGYTIRENARIKGRSGISHVFDVVASDINTENYTLGIDILKKQPAL
ELQDVALFDAKAFDCGISDKVIATTAKITPDAQQFADAQKVKLIKLNPIP
ISTEESAAITTAEEVVKTSAKTESKNGKPAITDLRQSPRPEALKLIPEVL
ARRYTAIPLNIVGNTLEMAMADPSDILALEAFSAHSKRRIKPIPADAREI
RESIDFNYKGYGDIEKYLSRMSIPSEITDDRLAIDAAIDAPLAQALNLII
EEAVKARSSDVHIEPNEDRLRVRFRIDGTLQDMMSLPITAHRAIISRIKI
LGDMNIADHFHALDGQFSVNAGGREIDIRAATAPTVNGEMSVLRLLDKSR
ATIELSQLGFLPESLEKYNKMLKVPYGMILISGPTGAGKTTTLYASINSL
DIMRQNIITIEDPAEYRFKDINQIQVNVQAGITFASGLRSILRLDPDVIL
VGEIRDSETANIAVQAALTGHLMLSSIHANNTTGVLYRLIDLGVEPFLIA
SAVVGVVAQRMVRRVCPYCQHTIEVPVIEQVAYEREIGEKRTKFVYGSGC
KSCAFTGYLGRVGLFEIMSISDELRRLMLSGASPSEIHNQAIKDGMITMM
KDGMLKVKDNVTTPSEVLRSAYSPEEQY
>cbdbA1107 lepB, signal peptidase I
MYNLPQMNVTNVKSLLLELAGIILVALVIVGISKVTLSYSIVDGTSMDPT
LQNEQRLLVNKISYMFGEPQRGDIIVFPPPAQYSYENDFIKRIVGLPGES
VEVKADGTVYINDQPLSEPYVVYPKAFPVAKVYVPEGQYYVMGDNRVVSL
DSRYGFFVARKDIVGEAWLSIWPLGEFHFLAVLPILLIMKRD
>cbdbA1327 lspA, lipoprotein signal peptidase
MTRGLVFFVSTACGILADQLSKFIITANLATGTSIPESGFFQIVHVHNTG
AAFSIFRGHIEWLIAASVLGVILAMTAFFIRKKLPFLDTRPGLIALGVIL
AGTVGNLIDRVRLGYVTDFIRVGDFPTFNIADSCLTVGVIGLLLLYIVSS
HVSGDTSENV
>cbdbA1303 pilC, pilin biogenesis protein
MDFNYVAYGQDKRLVKGKIPATSMEAAQRLLSHSGYQILSIKPLTPFFNT
AGSFNFSKVKPREVILFSRQLALLLESGTDIVTSLELLQEQTTNKLFREI
IGEIVNDIRGGSSLSLAMSKHPKAFPPLYHRVIAAGEQGGSLEVVLRNLA
SFVQRNVETEKKVKSALTYPGVVAVVGILVLLLMVTFVLPAFTSLYSQMG
TELPTPTRILIGLSDFFESWGLYVIGIFIIAVTALVIYMRTPMGRYHRDR
IALKLPVIGRILLLSELSRACQTMSLLFKAGLPLPEIMNQTTAAANNKLI
SNALADVQHDLIRGEGLSRPMTKNPLFLPMMVQMVSVGEETGKLDDTLAT
VSATYDTETDDRISAAIGMIQPVMTIAIGLVVGFIAVALVSSMYSLYGQI
G
>cbdbA1178 pilT, twitching mobility protein
MIEIYELLKLVVDKDASDLHIKAPTSPVLRINGDLIRQPQYPPITPEDAE
QIFKSITTPHQQEVFASDNELDFVYSVTNLARFRVNVLRQRGSLSLAFRV
VPFVIRNVDELNLPPILKSLIIRPRGLLLVTGPTGSGKSTTQAAMIEHLN
NCRRSNVITIEDPIEYLFHDNECIISQRELGGDTRSFAIALKHALRHDPN
VIVIGEMRDLETISTAIAAAETGHLVIGTLHTTDAPQTVDRLIDMFPPSQ
QQQIRLQLSQVLEAIISQTLIPRMDNKGRVAAFEILIANNAARNLIREGK
TFELLTVMQLGKNDGMQTLDNELTRLAKEGIISVENAVLKSSNPERLRKS
LSNLGHGA
>cbdbA1310 pilT, twitching mobility protein
MDVIKLIYEAEEKKGSDLHLVAQSPPLVRVRGDLEALNGYEQLQPADIKT
AFEQLTTHEERETFYQEWELDFGYSLDGVGRLRCNAAMQRGAISLAIRLL
PPNIPTISELELPDICQKLVTKPRGLVIVTGPTGSGKSTTLAAMIQHLNN
TESKHVVTIEDPIEYVHPCIKCAVTQRQLGSDTLSFGHALKHVLRQNPDV
IMVGEMRDLDTAAAVLTIAETGHLVLSTSHAPSAYQALERIIDLFPPHER
HLAQTRLASLIEGVLCQTLIPRSNTDGRIVAVEIMLGSPAVRNLIREGKF
YQLPNVIRTSHDEGMITMDEALVELYRQQVISRENLFNYCQDASEVEKLI
NSSPSSQKRKKLIENSKSLLF
>cbdbA873 pilT, twitching mobility protein
MRADELLKIAVDKKASDLHLRVPNPPVLRIDGALQPQTDWPVMYNKAIEQ
ILEEITTPEQREVFYAEKELDFAYSVPGVARFRVNVMRQRGSISIAFRQV
PFQIRSIDELGVPQICKELILKPRGLILITGPTGSGKSTTMAAMVDHLNR
TDARNIITIEDPIEYLYTNNRCIIAQRDLGDDTKSFSTALKHALRHDPDV
ILVGEMRDLETISTAISAAETGHLVVGTLHTTDAPQTIDRLIDIFPPDQQ
QQIRMQLSLVIEAVLVQTLLPKLGGKGRVAAFEIMVANTAVRNLIRDKKA
HELHNVMQLSVKDGMQTLDQSLANLVRQNMVSMEEALLKSSYPERLQKLL
QYQQTKQNPF
>cbdbA388 secA, preprotein translocase, SecA subunit
MFKFFSSFGDSNEKEIRALEPLVDKINQLENSFTTLSDEALKAKTIEFRA
RLKNTFETTTAGIQEDITSTTAELAEAQKIADNSKQSRLKAKLESLNKDL
SAKENTALNGILPEAFAAVREASRRTIGLRHYDVQLIGGIVLHHGKIAEM
RTGEGKTLVATLPLYLNSLLGKGVHLVTVNDYLARRDAYWMGPVYHALGV
SVSSIYPMQTPTEELPSRLFDPDYTSEIPGDPWTHFRPISRQEAYKADIT
YGTSTEFGFDYLRDNLRPDLAQCVQRDMNYAIVDEIDNLLIDEARTPLII
SAPDTEAGKLYDVFARLSPRLVVVKDYEINEKDRNAELTEDGWANVEKLL
SREGVMKGNSLYDPQNAPLIRHLRNALSAKEFYKKDHQYVVKEGEIIIID
EFTGRMMLGRRYSEGLHQAIEAKEHVKVQQESKTYATVTIQNLFRMYRKL
CGMTGTAATEAEEFSKIYKLEVVIIPTNKPAVREDYGDQIYKDQSAKFKA
VVNEIDEMRKLGRPVLVGTVSIENSEMLSNMLKRQGIEHKVLNAKQHEKE
AQVVAEAGKPGAVTVATNMAGRGVDILLGGKEPTKDDAKVYNEWQAHHQQ
VLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYVALDDDIMRR
FGSERIQGIMEWAGMDENTPIENGLVSRTLENAQKRVEGYHFDVRKHLVE
YDDVVNKHREVIYAERRKILSGADLKSNILDMIREEIITQTAEHTRGYDS
SEWNLDGLVTHLNGIFTLPAEINAEALAKLSQEEITDLLTRTAEELYQKK
EDETGAGSMRLLERIIMLHTLDSLWVEHLTIMENLRREIGLQAFAQRDPL
IAYKNEGHVRFQELLETIKHDVVHNIYRVGIQIQHQTESATAKAASRPVQ
QQKPLPAAPAAAIPGVSAKAATQSTTPAAKEIGRNDPCPCGSGKKYKKCC
GK
>cbdbA274 secD, protein-export membrane protein SecD
MRRKNGLVFLAILAAMILAFTIVLPTDKGTLLGKGILFGLDLKGGLHMVY
QADLSNVDESDIDGVMDGVVEVISNRINPLGVTEALIQRQGDDRIVVELP
GLDITDEQKARIGRTALLEFGELAADGEDYKWENSLGKWKPVTATIDGVE
YALTSAYFKDSTYVNRDQYGNILLVFEWDATGAKLSKEITTRLLNQQLGI
FEGDEALSGDDGVPIAPVINNVIETSGVIEGLSYNEADMLSNQLNAGRLP
VPLESIYEQTVSPTLGQNFVDLAVKAGLVGIILVMIFMIAFYRLPGLLAS
IALVFYGVIVMALFKLVPVTLTLAGIGGFIVSAGMAVDANILIFARLKEE
LLSGKTLGAAVEAGFSRAWSAIWDSNVTTFIACGILFWVGGTIAAGAPVK
GFAVTLFLGVAVSMFTAIFVTRTLLRLFVGTKTGKKLALFTTQTRGKNE
>cbdbA959 secE, preprotein translocase, SecE subunit
MCPSAQQTAKAAGKKPGFFSNLIAELKKVVWPTRPDVIKLTTMVLVVAIT
VGIVLGVVDYGFSWFIDNVFVK
>cbdbA273 secF, protein-export membrane protein SecF
MNKIIQHRPLFIFISALIILAGLASLLIFGLKPGIEFSSGSMLTVKFDQT
VSIDELTQELRSLGQNEAIVQVTGDGDYLIRTSQLDVSQKISLETSLEET
FGNLTERGFENVDPMIARQTTQMALIAIGAALVGILLYVTWAFRRMPKPF
HYGTCAVIALFHDALVVLGIFALLAGIFGWEINLMFIIGIMAVIGYSINN
TVVVFDRIRENQLKGIHPSFEVVVNQSIMETIVRSINSSFTVIITVVALM
LFLGASIQNLSIVMLIGLIAGTYDSLFVAPSLLVTWENGDWGKLLKPFKK
A
>cbdbA458 secY, preprotein translocase, SecY subunit
MRQKSSRPRLLQAMIDAFSLPDLRRRLLITLGILIAARFIAHVPLPGVDS
VALQELFDQNGALGMLDLFSGGAMRYFSVAALGVYPYITASIIMTLLTPV
IPKLSALSKEGDAGRNKINTITHWLAVPTAALAGYSQLLLLQREGAVAQT
EPLAAIAIVLSIVAGTMFMVWLGEQITSYGIGNGISLIIFAGIVAGLPDM
IGRGLMASDQFAGLAVYAFMALLTTVLIVIFTEAHRRIPVQYAQTVIRSG
KMYRRGGESHIPLRVNSAGMIPLIFASALVMLPGLVASYFMAGSTAEPNF
WNSVYTIFSSSASMPGGLVYWSLYFFMTIIFAFFYTMVTFEQQDIPGTLQ
RQGGFVPGIRPGKMTDQYLSGVIGRITWAGALFLGFVAIMPFLAREVTGI
QVIQLSSFGMLIVVGVALDTMKQLEAQLVMRRYEGFIK
>cbdbA1694 tatA/E, twin-arginine translocation protein, TatA
MPKIGPIEILIIVLLVVVVFGASRIPKVGESLGKALHNIRKKNDFEEETP
KPKVVKKLEDDAVSAKINEKIAETKKES
>cbdbA1695 tatA/E, twin-arginine translocation protein, TatA
MPKIGPMEILIIVLLVVVVFGVGKLPQVGDAIGKGIRNFRKASTGEDAKE
EVETKEETKPAEKSE
>cbdbA1693 tatB, putative twin-arginine translocation protein TatB
MDFLGIGFGEIIIVLIVATLIFGPGKIPEFARQIGQFVNSFRKVTGEMTR
DFTRAIDAENLASPGKKKTGSSTSTSTSKSKSLDNFLNGPGSGGKA
>cbdbA1691 tatC, Sec-independent protein translocase TatC
MSTKNETPEVEEEEPPEEVKAKGKMPIGGHFNELRQRFTRGIIALVVGVM
AAFFFATPIIGFLTAPGGPDFKPAQLGVMEYASVFFNVSLWAGFILASPY
ILYQLIAFITPALNRNEKKFIFISIPAVTVMFLAGLAFAYYVALPPALNI
LLHWGDDVVLTVVGIKDYMNVVTRILIALGLIFETPFIIMVLARLGVVSP
KWLASKRKIWVVIAFVIAALITPTFDPVNQTIMAGPLIVLYEISIWLSKL
VYRKKREVIESK
>cbdbA1339 yajC, preprotein translocase, YajC subunit
MDQQTITMFVLLALFFGMFYFLIIRPQRQRQKDHANLMSSIAKGDGVITI
GGIHGVIESVAEDSVVIKVESGTLLKVSRGAIGFKKSPEDKK