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2024-05-18 08:52:30

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Idiomarina loihiensis L2TR, L2TR

Number of genes found: 90

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Idiomarina loihiensis L2TR, L2TR
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA IL1224 Outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS1317310 1272 - 0.453616
NA IL1857 TonB system biopolymer transport componentSubName: Full=TonB system biopolymer transport component; chromosome CDS1987288 525 - 0.474286
NA IL2184 Possible biopolymer transport protein, ExbB familySubName: Full=Possible biopolymer transport protein, ExbB family; chromosome CDS2333648 771 - 0.468223
NA IL0904 possible Flp pilus assembly protein CpaCSubName: Full=Possible Flp pilus assembly protein CpaC; chromosome CDS958962 1215 - 0.43786
NA IL2021 Type II secretory pathway, pseudopilin PulG-likeSubName: Full=Type II secretory pathway, pseudopilin PulG-like; chromosome CDS2164023 393 - 0.524173
NA IL1856 Biopolymer transport proteinSubName: Full=Biopolymer transport protein; chromosome CDS1986874 402 - 0.442786
NA IL1819 N-terminal winged-HTH domain fused to TolB-like domainSubName: Full=N-terminal winged-HTH domain fused to TolB-like domain; chromosome CDS1951858 1998 + 0.398899
NA IL0905 Flp pilus assembly protein CpaBSubName: Full=Flp pilus assembly protein CpaB; chromosome CDS960161 708 - 0.418079
NA IL0605 Uncharacterized conserved secreted proteinSubName: Full=Uncharacterized conserved secreted protein; chromosome CDS652892 3177 + 0.503305
NA IL1635 Lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome CDS1749330 504 - 0.434524
NA IL1241 Lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome CDS1333925 513 - 0.504873
NA IL2118 TonB system biopolymer transport componentSubName: Full=TonB system biopolymer transport component; chromosome CDS2253993 1380 - 0.502899
NA IL0783 Predicted secreted proteinSubName: Full=Predicted secreted protein; chromosome CDS841679 393 - 0.43257
NA IL2116 Biopolymer transport proteinSubName: Full=Biopolymer transport protein; chromosome CDS2253031 408 - 0.485294
NA IL1236 Sec-independent protein secretion pathway component, TatA familyRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS1331083 219 - 0.406393
NA IL1858 TonB system biopolymer transport componentSubName: Full=TonB system biopolymer transport component; chromosome CDS1987816 1368 - 0.431287
NA IL1543 Uncharacterized conserved membrane proteinSubName: Full=Uncharacterized conserved membrane protein; chromosome CDS1662399 507 - 0.459566
NA IL1083 TonB system biopolymer transport componentSubName: Full=TonB system biopolymer transport component; chromosome CDS1168382 711 - 0.462729
NA IL1638 Outer membrane protein, probably efflux familySubName: Full=Outer membrane protein, probably efflux family; chromosome CDS1751809 1251 + 0.494804
NA IL1634 Outer membrane efflux proteinSubName: Full=Outer membrane efflux protein; chromosome CDS1747636 1248 - 0.46875
NA IL2117 TonB system biopolymer transport componentSubName: Full=TonB system biopolymer transport component; chromosome CDS2253460 531 - 0.506591
NA IL0633 Lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome CDS689909 513 + 0.499025
NA IL0903 possible Flp pilus assembly protein CpaFSubName: Full=Possible Flp pilus assembly protein CpaF; chromosome CDS957742 1224 - 0.433824
ccmD IL1103 Heme exporter protein DSubName: Full=Heme exporter protein D; chromosome CDS1186588 231 - 0.450216
clpP IL1005 Protease subunit of ATP-dependent Clp proteaseRecName: Full=ATP-dependent Clp protease proteolytic subunit; EC=3.4.21.92; AltName: Full=Endopeptidase Clp; chromosome CDS1072432 621 - 0.463768
csgB IL0160 Minor curlin subunit CsgB, nucleation component of curlin monomersSubName: Full=Minor curlin subunit CsgB, nucleation component of curlin monomers; chromosome CDS168317 408 - 0.458333
czcC IL0779 Co/Zn/Cd efflux system componentSubName: Full=Co/Zn/Cd efflux system component; chromosome CDS837073 1248 - 0.494391
damX IL2474 Uncharacterized ATPase, DamXSubName: Full=Uncharacterized ATPase, DamX; chromosome CDS2650916 1560 + 0.513462
exbD IL1082 Biopolymer transport proteinSubName: Full=Biopolymer transport protein; chromosome CDS1167957 429 - 0.473193
exeA IL1965 General secretion pathway protein, ATPaseSubName: Full=General secretion pathway protein, ATPase; chromosome CDS2097901 1419 - 0.501057
ffh IL1727 Signal recognition particle GTPaseRecName: Full=Signal recognition particle protein; AltName: Full=Fifty-four homolog; chromosome CDS1856819 1365 - 0.486447
fimV IL1018 Probable Tfp pilus assembly protein FimV , contains LysM domainSubName: Full=Probable Tfp pilus assembly protein FimV , contains LysM domain; chromosome CDS1087317 2349 - 0.48957
flgM IL1151 Negative regulator of flagellin synthesisSubName: Full=Negative regulator of flagellin synthesis; chromosome CDS1230915 324 + 0.459877
flhA IL1120 Flagellar biosynthesis protein FlhASubName: Full=Flagellar biosynthesis protein FlhA; chromosome CDS1201040 2154 - 0.488394
flhB IL1187 Flagellar biosynthesis proten FlhBSubName: Full=Flagellar biosynthesis proten FlhB; chromosome CDS1276831 1128 - 0.458333
fliE IL1201 Flagellar hook-basal body proteinRecName: Full=Flagellar hook-basal body complex protein FliE; chromosome CDS1289532 333 - 0.468468
fliF IL1200 Flagellar basal body M-ring proteinRecName: Full=Flagellar M-ring protein; chromosome CDS1287793 1713 - 0.483946
fliH_1 IL1198 type III secretory pathway proteinSubName: Full=Type III secretory pathway protein; chromosome CDS1285990 750 - 0.474667
fliI IL1197 type III secretory pathway ATPaseSubName: Full=Type III secretory pathway ATPase; chromosome CDS1284637 1350 - 0.514815
fliJ IL1196 Flagellar biosynthesis chaperoneSubName: Full=Flagellar biosynthesis chaperone; chromosome CDS1284190 444 - 0.459459
fliN IL1192 Flagellar motor switchSubName: Full=Flagellar motor switch; chromosome CDS1280120 456 - 0.473684
fliP IL1190 Flagellar biosynthesis protein FliPSubName: Full=Flagellar biosynthesis protein FliP; chromosome CDS1279052 747 - 0.471218
fliQ IL1189 Flagellar biosynthesis protein FliQSubName: Full=Flagellar biosynthesis protein FliQ; chromosome CDS1278774 270 - 0.455556
fliR IL1188 Flagellar biosynthesis protein FliRRecName: Full=Flagellar biosynthetic protein fliR; chromosome CDS1277989 786 - 0.474555
fliS IL1133 Flagellin-specific chaperone FliSSubName: Full=Flagellin-specific chaperone FliS; chromosome CDS1213041 423 - 0.446809
ftsY IL0226 Signal recognition particle GTPaseRecName: Full=Signal recognition particle receptor FtsY; Short=SRP receptor; chromosome CDS244795 1350 + 0.491111
hofQ IL2471 Type II secretory pathway, component PulJSubName: Full=Type II secretory pathway, component PulJ; chromosome CDS2647824 1284 + 0.494548
lepB IL0811 Signal peptidase IRecName: Full=Signal peptidase I; EC=3.4.21.89; chromosome CDS867885 921 - 0.453855
lspA IL1127 Lipoprotein signal peptidaseRecName: Full=Lipoprotein signal peptidase; EC=3.4.23.36; AltName: Full=Prolipoprotein signal peptidase; AltName: Full=Signal peptidase II; chromosome CDS1206244 525 - 0.460952
mshE IL0370 Type II secretory pathway, ATPaseSubName: Full=Type II secretory pathway, ATPase; chromosome CDS385908 1716 + 0.505827
mshG IL0371 Type II secretory pathwaySubName: Full=Type II secretory pathway; chromosome CDS387623 1239 + 0.48184
mshI_2 IL0364 Type II secretory pathway componentSubName: Full=Type II secretory pathway component; chromosome CDS380682 609 + 0.464696
mshL IL0367 Type II secretory pathwaySubName: Full=Type II secretory pathway; chromosome CDS382249 1674 + 0.467145
mshM IL0368 General secretion pathway protein, ATPaseSubName: Full=General secretion pathway protein, ATPase; chromosome CDS383933 909 + 0.482948
mshQ IL0379 Type II secretory pathway componentSubName: Full=Type II secretory pathway component; chromosome CDS392763 4296 + 0.464618
pilF IL2036 Tfp pilus assembly protein PilFSubName: Full=Tfp pilus assembly protein PilF; chromosome CDS2179469 456 - 0.473684
pilT IL1973 Twitching motility ATPaseSubName: Full=Twitching motility ATPase; chromosome CDS2105849 1035 - 0.480193
pppD IL0453 Pilin protein PilASubName: Full=Pilin protein PilA; chromosome CDS468767 483 - 0.498965
pulC IL2027 Type II secretory pathway, component PulCSubName: Full=Type II secretory pathway, component PulC; chromosome CDS2170234 876 - 0.476027
pulD IL2026 Type II secretory pathway, component PulDSubName: Full=Type II secretory pathway, component PulD; chromosome CDS2168106 2127 - 0.476258
pulE IL2025 Type II secretory pathway, ATPase PulE-likeSubName: Full=Type II secretory pathway, ATPase PulE-like; chromosome CDS2166629 1485 - 0.501683
pulE IL0452 Type II secretory pathway, ATPase PulESubName: Full=Type II secretory pathway, ATPase PulE; chromosome CDS467454 1314 - 0.513699
pulF IL0451 Type II secretory pathway, PulF-likeSubName: Full=Type II secretory pathway, PulF-like; chromosome CDS466289 1179 - 0.476675
pulF IL2024 Type II secretory pathway, component PulFSubName: Full=Type II secretory pathway, component PulF; chromosome CDS2165399 1227 - 0.471068
pulG IL2023 Type II secretory pathway, pseudopilin PulGSubName: Full=Type II secretory pathway, pseudopilin PulG; chromosome CDS2164959 438 - 0.465753
pulH IL2022 Type II secretory pathway, component PulHSubName: Full=Type II secretory pathway, component PulH; chromosome CDS2164418 552 - 0.472826
pulJ IL2020 Type II secretory pathway, component PulJSubName: Full=Type II secretory pathway, component PulJ; chromosome CDS2163350 684 - 0.48538
pulK IL2019 Type II secretory pathway, component PulKRecName: Full=Type II secretion system protein K; chromosome CDS2162374 987 - 0.482269
pulL IL2018 Type II secretory pathway, component PulLRecName: Full=Type II secretion system protein L; Short=T2SS protein L; chromosome CDS2161150 1221 - 0.494677
pulM IL2017 Type II secretory pathway, component PulMRecName: Full=Type II secretion system protein M; Short=T2SS protein M; AltName: Full=General secretion pathway protein M; chromosome CDS2160635 519 - 0.468208
pulO IL0450 Type II pili prepilin peptidase PilD/XcpARecName: Full=Type 4 prepilin-like proteins leader peptide-processing enzyme; EC=2.1.1.-; EC=3.4.23.43; chromosome CDS465413 861 - 0.511034
secA IL0445 Preprotein translocase subunit SecA, ATP-dependent RNA helicaseRecName: Full=Protein translocase subunit SecA; chromosome CDS460630 2718 + 0.47351
secB IL0235 Preprotein translocase subunit SecBRecName: Full=Protein-export protein SecB; chromosome CDS253110 504 + 0.468254
secD IL2148 Preprotein translocase subunit SecDRecName: Full=Protein translocase subunit SecD; chromosome CDS2284049 1845 - 0.471003
secE IL0339 Preprotein translocase subunit SecERecName: Full=Protein translocase subunit SecE; chromosome CDS350031 381 + 0.448819
secF IL2147 Preprotein translocase subunit SecFRecName: Full=Protein-export membrane protein SecF; chromosome CDS2283093 948 - 0.456751
secG IL0971 Biopolymer transport proteinSubName: Full=Biopolymer transport protein; chromosome CDS1026333 342 - 0.47076
secY IL1896 Preprotein translocase subunit SecYRecName: Full=Protein translocase subunit SecY; chromosome CDS2033556 1329 - 0.45222
smf IL0019 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptakeSubName: Full=Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; chromosome CDS22857 1011 + 0.497527
sohB IL1038 Periplasmic serine protease, ClpP familySubName: Full=Periplasmic serine protease, ClpP family; chromosome CDS1114386 999 - 0.418418
sppA IL1329 Periplasmic serine protease, ClpP familyRecName: Full=Protease 4; EC=3.4.21.-; AltName: Full=Endopeptidase IV; AltName: Full=Protease IV; AltName: Full=Signal peptide peptidase; chromosome CDS1429654 1851 + 0.450567
tadB IL0902 Flp pilus assembly protein TadBSubName: Full=Flp pilus assembly protein TadB; chromosome CDS956909 702 - 0.408832
tadC IL0901 Flp pilus assembly protein TadCSubName: Full=Flp pilus assembly protein TadC; chromosome CDS956124 714 - 0.414566
tatA IL2370 Sec-independent protein secretion pathway component, TatA familyRecName: Full=Sec-independent protein translocase protein TatA; chromosome CDS2540715 222 - 0.432432
tatB IL2369 Sec-independent protein secretion pathway component, TatA familyRecName: Full=Sec-independent protein translocase protein TatB; chromosome CDS2540364 351 - 0.470085
tatC IL2368 Sec-independent protein secretion pathway component TatCRecName: Full=Sec-independent protein translocase protein TatC; chromosome CDS2539637 735 - 0.480272
tolB IL1080 Periplasmic component of the Tol biopolymer transport systemRecName: Full=Protein TolB; Flags: Precursor; chromosome CDS1165676 1350 - 0.445185
tolC IL1957 Outer membrane proteinSubName: Full=Outer membrane protein; chromosome CDS2084632 1386 + 0.478355
yajC IL2149 Preprotein translocase subunit YajCSubName: Full=Preprotein translocase subunit YajC; chromosome CDS2285922 336 - 0.434524
yidC IL2637 Preprotein translocase subunit YidCRecName: Full=Membrane protein insertase YidC; AltName: Full=Foldase YidC; AltName: Full=Membrane integrase YidC; AltName: Full=Membrane protein YidC; chromosome CDS2836849 1593 - 0.46516