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2024-05-04 13:31:38

Gene list

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COG category: Intracellular trafficking and secretion
Organism: Idiomarina loihiensis L2TR, L2TR

Number of genes found: 90

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Idiomarina loihiensis L2TR, L2TR
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA IL1638 Outer membrane protein, probably efflux familychromosome CDS1751809 1251 + 0.494804
NA IL1635 Lipoprotein signal peptidasechromosome CDS1749330 504 - 0.434524
NA IL2184 Possible biopolymer transport protein, ExbB familychromosome CDS2333648 771 - 0.468223
NA IL0783 Predicted secreted proteinchromosome CDS841679 393 - 0.43257
NA IL2021 Type II secretory pathway, pseudopilin PulG-likechromosome CDS2164023 393 - 0.524173
NA IL1858 TonB system biopolymer transport componentchromosome CDS1987816 1368 - 0.431287
NA IL1224 Outer membrane efflux proteinchromosome CDS1317310 1272 - 0.453616
NA IL0633 Lipoprotein signal peptidasechromosome CDS689909 513 + 0.499025
NA IL1236 Sec-independent protein secretion pathway component, TatA familychromosome CDS1331083 219 - 0.406393
NA IL1241 Lipoprotein signal peptidasechromosome CDS1333925 513 - 0.504873
NA IL1634 Outer membrane efflux proteinchromosome CDS1747636 1248 - 0.46875
NA IL0905 Flp pilus assembly protein CpaBchromosome CDS960161 708 - 0.418079
NA IL2117 TonB system biopolymer transport componentchromosome CDS2253460 531 - 0.506591
NA IL1543 Uncharacterized conserved membrane proteinchromosome CDS1662399 507 - 0.459566
NA IL2118 TonB system biopolymer transport componentchromosome CDS2253993 1380 - 0.502899
NA IL0605 Uncharacterized conserved secreted proteinchromosome CDS652892 3177 + 0.503305
NA IL1083 TonB system biopolymer transport componentchromosome CDS1168382 711 - 0.462729
NA IL0904 possible Flp pilus assembly protein CpaCchromosome CDS958962 1215 - 0.43786
NA IL1857 TonB system biopolymer transport componentchromosome CDS1987288 525 - 0.474286
NA IL0903 possible Flp pilus assembly protein CpaFchromosome CDS957742 1224 - 0.433824
NA IL1819 N-terminal winged-HTH domain fused to TolB-like domainchromosome CDS1951858 1998 + 0.398899
NA IL2116 Biopolymer transport proteinchromosome CDS2253031 408 - 0.485294
NA IL1856 Biopolymer transport proteinchromosome CDS1986874 402 - 0.442786
ccmD IL1103 Heme exporter protein Dchromosome CDS1186588 231 - 0.450216
clpP IL1005 Protease subunit of ATP-dependent Clp proteasechromosome CDS1072432 621 - 0.463768
csgB IL0160 Minor curlin subunit CsgB, nucleation component of curlin monomerschromosome CDS168317 408 - 0.458333
czcC IL0779 Co/Zn/Cd efflux system componentchromosome CDS837073 1248 - 0.494391
damX IL2474 Uncharacterized ATPase, DamXchromosome CDS2650916 1560 + 0.513462
exbD IL1082 Biopolymer transport proteinchromosome CDS1167957 429 - 0.473193
exeA IL1965 General secretion pathway protein, ATPasechromosome CDS2097901 1419 - 0.501057
ffh IL1727 Signal recognition particle GTPasechromosome CDS1856819 1365 - 0.486447
fimV IL1018 Probable Tfp pilus assembly protein FimV , contains LysM domainchromosome CDS1087317 2349 - 0.48957
flgM IL1151 Negative regulator of flagellin synthesischromosome CDS1230915 324 + 0.459877
flhA IL1120 Flagellar biosynthesis protein FlhAchromosome CDS1201040 2154 - 0.488394
flhB IL1187 Flagellar biosynthesis proten FlhBchromosome CDS1276831 1128 - 0.458333
fliE IL1201 Flagellar hook-basal body proteinchromosome CDS1289532 333 - 0.468468
fliF IL1200 Flagellar basal body M-ring proteinchromosome CDS1287793 1713 - 0.483946
fliH_1 IL1198 type III secretory pathway proteinchromosome CDS1285990 750 - 0.474667
fliI IL1197 type III secretory pathway ATPasechromosome CDS1284637 1350 - 0.514815
fliJ IL1196 Flagellar biosynthesis chaperonechromosome CDS1284190 444 - 0.459459
fliN IL1192 Flagellar motor switchchromosome CDS1280120 456 - 0.473684
fliP IL1190 Flagellar biosynthesis protein FliPchromosome CDS1279052 747 - 0.471218
fliQ IL1189 Flagellar biosynthesis protein FliQchromosome CDS1278774 270 - 0.455556
fliR IL1188 Flagellar biosynthesis protein FliRchromosome CDS1277989 786 - 0.474555
fliS IL1133 Flagellin-specific chaperone FliSchromosome CDS1213041 423 - 0.446809
ftsY IL0226 Signal recognition particle GTPasechromosome CDS244795 1350 + 0.491111
hofQ IL2471 Type II secretory pathway, component PulJchromosome CDS2647824 1284 + 0.494548
lepB IL0811 Signal peptidase Ichromosome CDS867885 921 - 0.453855
lspA IL1127 Lipoprotein signal peptidasechromosome CDS1206244 525 - 0.460952
mshE IL0370 Type II secretory pathway, ATPasechromosome CDS385908 1716 + 0.505827
mshG IL0371 Type II secretory pathwaychromosome CDS387623 1239 + 0.48184
mshI_2 IL0364 Type II secretory pathway componentchromosome CDS380682 609 + 0.464696
mshL IL0367 Type II secretory pathwaychromosome CDS382249 1674 + 0.467145
mshM IL0368 General secretion pathway protein, ATPasechromosome CDS383933 909 + 0.482948
mshQ IL0379 Type II secretory pathway componentchromosome CDS392763 4296 + 0.464618
pilF IL2036 Tfp pilus assembly protein PilFchromosome CDS2179469 456 - 0.473684
pilT IL1973 Twitching motility ATPasechromosome CDS2105849 1035 - 0.480193
pppD IL0453 Pilin protein PilAchromosome CDS468767 483 - 0.498965
pulC IL2027 Type II secretory pathway, component PulCchromosome CDS2170234 876 - 0.476027
pulD IL2026 Type II secretory pathway, component PulDchromosome CDS2168106 2127 - 0.476258
pulE IL0452 Type II secretory pathway, ATPase PulEchromosome CDS467454 1314 - 0.513699
pulE IL2025 Type II secretory pathway, ATPase PulE-likechromosome CDS2166629 1485 - 0.501683
pulF IL0451 Type II secretory pathway, PulF-likechromosome CDS466289 1179 - 0.476675
pulF IL2024 Type II secretory pathway, component PulFchromosome CDS2165399 1227 - 0.471068
pulG IL2023 Type II secretory pathway, pseudopilin PulGchromosome CDS2164959 438 - 0.465753
pulH IL2022 Type II secretory pathway, component PulHchromosome CDS2164418 552 - 0.472826
pulJ IL2020 Type II secretory pathway, component PulJchromosome CDS2163350 684 - 0.48538
pulK IL2019 Type II secretory pathway, component PulKchromosome CDS2162374 987 - 0.482269
pulL IL2018 Type II secretory pathway, component PulLchromosome CDS2161150 1221 - 0.494677
pulM IL2017 Type II secretory pathway, component PulMchromosome CDS2160635 519 - 0.468208
pulO IL0450 Type II pili prepilin peptidase PilD/XcpAchromosome CDS465413 861 - 0.511034
secA IL0445 Preprotein translocase subunit SecA, ATP-dependent RNA helicasechromosome CDS460630 2718 + 0.47351
secB IL0235 Preprotein translocase subunit SecBchromosome CDS253110 504 + 0.468254
secD IL2148 Preprotein translocase subunit SecDchromosome CDS2284049 1845 - 0.471003
secE IL0339 Preprotein translocase subunit SecEchromosome CDS350031 381 + 0.448819
secF IL2147 Preprotein translocase subunit SecFchromosome CDS2283093 948 - 0.456751
secG IL0971 Biopolymer transport proteinchromosome CDS1026333 342 - 0.47076
secY IL1896 Preprotein translocase subunit SecYchromosome CDS2033556 1329 - 0.45222
smf IL0019 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS22857 1011 + 0.497527
sohB IL1038 Periplasmic serine protease, ClpP familychromosome CDS1114386 999 - 0.418418
sppA IL1329 Periplasmic serine protease, ClpP familychromosome CDS1429654 1851 + 0.450567
tadB IL0902 Flp pilus assembly protein TadBchromosome CDS956909 702 - 0.408832
tadC IL0901 Flp pilus assembly protein TadCchromosome CDS956124 714 - 0.414566
tatA IL2370 Sec-independent protein secretion pathway component, TatA familychromosome CDS2540715 222 - 0.432432
tatB IL2369 Sec-independent protein secretion pathway component, TatA familychromosome CDS2540364 351 - 0.470085
tatC IL2368 Sec-independent protein secretion pathway component TatCchromosome CDS2539637 735 - 0.480272
tolB IL1080 Periplasmic component of the Tol biopolymer transport systemchromosome CDS1165676 1350 - 0.445185
tolC IL1957 Outer membrane proteinchromosome CDS2084632 1386 + 0.478355
yajC IL2149 Preprotein translocase subunit YajCchromosome CDS2285922 336 - 0.434524
yidC IL2637 Preprotein translocase subunit YidCchromosome CDS2836849 1593 - 0.46516