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2024-05-19 00:50:17

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome 1

Number of genes found: 192

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Photobacterium profundum, ss9
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PBPRA0774 hypothetical chemotaxis histidine protein kinase, CheAchromosome 1 CDS852553 2241 + 0.492637
NA PBPRA2946 hypothetical proteinchromosome 1 CDS3377838 855 + 0.416374
NA PBPRA2671 Hypothetical cell growth regulatory protein mazEchromosome 1 CDS3100310 255 + 0.403922
NA PBPRA2303 hypothetical hemolysin secretion protein HylBchromosome 1 CDS2651947 1647 - 0.397693
NA PBPRA1000 hypothetical signal transduction proteinchromosome 1 CDS1107317 1368 - 0.35307
NA PBPRA1523 hypothetical proteinchromosome 1 CDS1723227 1548 - 0.355297
NA PBPRA1970 hypothetical proteinchromosome 1 CDS2266964 1863 + 0.419216
NA PBPRA0685 hypothetical proteinchromosome 1 CDS757277 2064 + 0.414244
NA PBPRA2177 hypothetical proteinchromosome 1 CDS2502823 1446 - 0.401798
NA PBPRA1138 conserved hypothetical proteinchromosome 1 CDS1263670 1629 - 0.349294
NA PBPRA1922 putative activator of ProP osmoprotectant transporterchromosome 1 CDS2207664 645 - 0.407752
NA PBPRA1137 hypothetical proteinchromosome 1 CDS1262100 1482 - 0.352227
NA PBPRA2515 hypothetical GGDEF family proteinchromosome 1 CDS2909386 1167 + 0.368466
NA PBPRA2589 hypothetical proteinchromosome 1 CDS2996929 1623 + 0.401109
NA PBPRA0105 hypothetical proteinchromosome 1 CDS106057 423 + 0.416076
NA PBPRA0989 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS1091902 1956 + 0.47546
NA PBPRA2220 hypothetical proteinchromosome 1 CDS2555696 1647 - 0.384942
NA PBPRA0776 hypothetical proteinchromosome 1 CDS855531 2796 + 0.490343
NA PBPRA2210 hypothetical proteinchromosome 1 CDS2542749 699 - 0.391989
NA PBPRA0684 hypothetical proteinchromosome 1 CDS755772 1221 + 0.387387
NA PBPRA2718 hypothetical proteinchromosome 1 CDS3154152 807 - 0.451053
NA PBPRA1593 hypothetical proteinchromosome 1 CDS1818063 4962 + 0.508867
NA PBPRA2197 hypothetical proteinchromosome 1 CDS2526216 1230 - 0.331707
NA PBPRA2822 hypothetical proteinchromosome 1 CDS3270578 636 + 0.358491
NA PBPRA1439 Hypothetical proteinchromosome 1 CDS1614341 2103 + 0.378982
NA PBPRA2729 hypothetical proteinchromosome 1 CDS3162340 1749 + 0.401944
NA PBPRA0051 Hypothetical proteinchromosome 1 CDS50663 699 + 0.416309
NA PBPRA3384 hypothetical Methyl-accepting chemotaxis proteinchromosome 1 CDS3825226 1617 + 0.471861
NA PBPRA1455 Hypothetical proteinchromosome 1 CDS1632041 414 + 0.410628
NA PBPRA2087 hypothetical proteinchromosome 1 CDS2406411 3162 + 0.375079
NA PBPRA2467 hypothetical proteinchromosome 1 CDS2857448 1992 + 0.386546
NA PBPRA0658 hypothetical proteinchromosome 1 CDS721945 1311 + 0.341724
NA PBPRA0551 hypothetical isocitrate dehydrogenase kinase/phosphatasechromosome 1 CDS595386 1728 - 0.402778
NA PBPRA1692 hypothetical proteinchromosome 1 CDS1936945 525 - 0.384762
NA PBPRA1827 hypothetical proteinchromosome 1 CDS2108443 2082 - 0.381844
NA PBPRA0447 Putative methyl-accepting chemotaxis proteinchromosome 1 CDS462339 1602 + 0.44382
NA PBPRA0165 putative LexA repressorchromosome 1 CDS169235 579 + 0.428325
NA PBPRA1983 hypothetical transcriptional regulatorchromosome 1 CDS2278348 312 - 0.314103
AF0231 PBPRA1475 hypothetical binding protein component ofABC transporterchromosome 1 CDS1675889 798 + 0.417293
AGCG4342 PBPRA1432 putative cyclic nucleotide binding proteinchromosome 1 CDS1605574 681 + 0.431718
ALL2459 PBPRA1597 hypothetical proteinchromosome 1 CDS1828517 1197 + 0.411028
ATU1060 PBPRA0831 putative transcriptional regulatorchromosome 1 CDS917163 1233 - 0.454177
BC0561 PBPRA2762 hypothetical Response regulator ofcitrate/malate metabolismchromosome 1 CDS3203451 678 - 0.470501
BLL2800 PBPRA2520 hypothetical proteinchromosome 1 CDS2917214 1896 - 0.396624
C0996 PBPRA2074 putative ABC-type amino acid transport/signaltransduction systemchromosome 1 CDS2388682 654 + 0.405199
C3964 PBPRA3257 putative nitrogen regulatory IIA protein PtsNchromosome 1 CDS3690181 432 + 0.407407
C4475 PBPRA0189 putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolasechromosome 1 CDS194849 2112 - 0.458333
C4817 PBPRA3495 putative nitrogen regulation proteinchromosome 1 CDS3951298 1416 + 0.451977
CHEV-2 PBPRA1910 putative chemotaxis protein CheVchromosome 1 CDS2196902 891 - 0.380471
CHEY-2 PBPRA0940 putative chemotaxis protein CheYchromosome 1 CDS1039712 384 + 0.364583
CHPA PBPRA2672 putative MazF proteinchromosome 1 CDS3100564 354 + 0.409605
CPE0743 PBPRA3037 putative carbon starvation protein Achromosome 1 CDS3480535 1527 + 0.436149
CPSR PBPRA0572 putative sigma-54 dependent transcriptional regulatorchromosome 1 CDS624438 1458 + 0.424554
CSRA PBPRA3065 putative carbon storage regulatorchromosome 1 CDS3500838 198 - 0.40404
CV3085 PBPRA2741 putative amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome 1 CDS3177904 819 - 0.41514
EBIG631 PBPRA1119 putative repressor protein luxOchromosome 1 CDS1243539 1458 + 0.406036
ECS0489 PBPRA0820 putative cell division protein BolAchromosome 1 CDS907621 309 + 0.436893
ECS3223 PBPRA0964 hypothetical phosphohistidine phosphatasechromosome 1 CDS1068154 471 + 0.490446
ECS4246 PBPRA0185 putative sensor outer membrane protein EnvZchromosome 1 CDS188679 1332 + 0.464715
FLER PBPRA0921 putative response regulatorchromosome 1 CDS1018950 1401 + 0.429693
FLIY PBPRA0007 Putative amino acid ABC transporter, periplasmic amino acid-binding portionchromosome 1 CDS6296 756 - 0.402116
GLNE PBPRA0448 putative glutamate-ammonia-ligase adenylyltransferasechromosome 1 CDS464159 2874 + 0.440501
GLNL PBPRA3494 putative nitrogen regulation proteinchromosome 1 CDS3950150 1074 + 0.453445
IRLR PBPRA0986 Putative two component response regulator transcription regulator proteinchromosome 1 CDS1088363 696 + 0.397988
ORF40 PBPRA2687 putative protein-tyrosine-phosphatasechromosome 1 CDS3118064 432 - 0.395833
PA1464 PBPRA0946 putative purine-binding chemotaxis protein CheWchromosome 1 CDS1046296 495 + 0.412121
PA2978 PBPRA1184 Putative phosphotyrosine protein phosphatasechromosome 1 CDS1331682 486 + 0.390947
PA3233 PBPRA3401 conserved hypothetical proteinchromosome 1 CDS3850954 1803 + 0.425402
PHOH PBPRA2879 putative phoH family proteinchromosome 1 CDS3309541 1062 + 0.448211
PLU2179 PBPRA1838 putative fumarate and nitrate reductionregulatory proteinchromosome 1 CDS2120684 753 + 0.394422
PLU4008 PBPRA0545 putative sensor histidine kinase FexBchromosome 1 CDS589541 2337 + 0.421481
PLU4794 PBPRA0231 hypothetical transcriptional regulator CpxRchromosome 1 CDS238387 489 - 0.451943
PLU4795 PBPRA0230 Putative sensor protein CpxAchromosome 1 CDS237020 1368 - 0.449561
PM1810 PBPRA0849 putative nitrate/nitrite response regulator proteinchromosome 1 CDS937563 627 - 0.393939
PP1926 PBPRA2209 hypothetical phosphatasechromosome 1 CDS2542170 513 - 0.434698
PP1940 PBPRA1136 putative methyl-accepting chemotaxis proteinchromosome 1 CDS1259891 2136 + 0.423221
PP4393 PBPRA0899 putative chemotaxis CheVchromosome 1 CDS995465 927 + 0.398058
PSPTO091 PBPRA0771 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS850601 1179 + 0.47922
PSPTO192 PBPRA0900 putative chemotaxis protein methyltransferase CheRchromosome 1 CDS996431 831 + 0.424789
PSPTO195 PBPRA0920 putative sensory box sensor histidine kinasechromosome 1 CDS1017834 1086 + 0.43186
PSPTO195 PBPRA0918 putative polar flagellar protein FlaKchromosome 1 CDS1014497 1458 + 0.419067
PSPTO195 PBPRA0020 Hypothetical two-component response regulatorchromosome 1 CDS21377 1419 + 0.464412
PSPTO198 PBPRA0942 Putative chemotaxis protein CheAchromosome 1 CDS1040860 2241 + 0.442213
PSPTO198 PBPRA0943 protein-glutamate methylesterase, chemotaxis protein CheBchromosome 1 CDS1043187 1185 + 0.466667
PSPTO323 PBPRA2077 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS2391024 2004 + 0.402196
PTSP PBPRA0578 hypothetical phosphoenolpyruvate-protein phosphotransferasechromosome 1 CDS630635 2256 + 0.435284
R01478 PBPRA2185 putative amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome 1 CDS2515378 1029 + 0.430515
RB11186 PBPRA1888 putative sigma-54 dependent response regulatorchromosome 1 CDS2174988 1470 - 0.440816
RS00367 PBPRA1001 Putative transcriptionalregulatorchromosome 1 CDS1108681 678 - 0.390855
RS02875 PBPRA0645 putative response regulatorchromosome 1 CDS708540 813 - 0.407134
S0048 PBPRA0400 putative bis(5-nucleosyl)-tetraphosphatasechromosome 1 CDS402290 822 - 0.442822
S1065 PBPRA1497 Putative DNA-binding response regulator TorRchromosome 1 CDS1698851 714 + 0.408964
S2024 PBPRA0777 hypothetical chemotaxis protein methyltransferasechromosome 1 CDS858444 912 + 0.462719
S2901 PBPRA3045 putative autoinducer-2 production protein LuxSchromosome 1 CDS3488390 528 - 0.405303
SCRF PBPRA1218 putative chemotaxis protein CheYchromosome 1 CDS1370077 531 + 0.40113
SF2634 PBPRA3094 putative sigma-E factor negative regulatory protein RseAchromosome 1 CDS3534911 699 - 0.433476
SFPB PBPRA2325 hypothetical protein Bchromosome 1 CDS2676923 774 + 0.412145
SMB20219 PBPRA2178 hypothetical DNA-binding response regulator OmpRchromosome 1 CDS2504261 786 - 0.410941
SMC03006 PBPRA0772 putative chemotaxis protein CheYchromosome 1 CDS851795 369 + 0.457995
SO0874 PBPRA3171 putative DnaK suppressor proteinchromosome 1 CDS3599937 450 + 0.453333
SO1586 PBPRA3314 putative cAMP-binding proteinschromosome 1 CDS3764191 567 + 0.391534
SO1942 PBPRA3166 hypothetical HD-GYP hydrolase domain containing proteinchromosome 1 CDS3591849 1257 + 0.404932
SO1945 PBPRA2422 hypothetical sensor protein PhoQchromosome 1 CDS2801701 1347 + 0.426875
SO2005 PBPRA1014 hypothetical dksA-type zinc finger proteinchromosome 1 CDS1124325 363 - 0.396694
SO2197 PBPRA1063 hypothetical GGDEF family proteinchromosome 1 CDS1180062 1020 - 0.406863
SO3208 PBPRA0941 putative chemotaxis protein CheZchromosome 1 CDS1040134 717 + 0.433752
SO3988 PBPRA0547 putative aerobic respiration control protein FexAchromosome 1 CDS592581 720 - 0.434722
SO4717 PBPRA1887 putative sensor histidine kinasechromosome 1 CDS2172946 2046 - 0.397849
STM0398 PBPRA0722 putative histidine protein kinase PhoRchromosome 1 CDS798638 1305 + 0.451341
STM2958 PBPRA3084 putative sensor histidine kinase/response regulatorchromosome 1 CDS3524233 2712 + 0.437316
STP1 PBPRA0664 hypothetical serine/threonine protein phosphatasechromosome 1 CDS730681 909 + 0.441144
STY0432 PBPRA0721 putative DNA-binding response regulator PhoBchromosome 1 CDS797762 690 + 0.43913
STY0674 PBPRA2300 putative sensor kinase citAchromosome 1 CDS2649193 1653 + 0.393224
STY0675 PBPRA2301 putative transcriptional regulator CitBchromosome 1 CDS2650847 663 + 0.395173
T0272 PBPRA3093 putative sigma-E factor regulatory protein RseBchromosome 1 CDS3533916 996 - 0.451807
T0379 PBPRA0850 hypothetical nitrate/nitrite sensor protein NarQchromosome 1 CDS938199 1698 - 0.40636
T0462 PBPRA2771 phosphoglycerate transport system transcription regulatorchromosome 1 CDS3216119 1284 + 0.411994
T1593 PBPRA2437 hypothetical phage shock protein Cchromosome 1 CDS2823157 387 - 0.397933
T1689 PBPRA2421 putative transcriptional regulatory protein PhoPchromosome 1 CDS2801015 690 + 0.413043
T2242 PBPRA2763 hypothetical signal transduction histidine kinase regulating citrate/malate metabolismchromosome 1 CDS3204168 1605 - 0.433022
UHPB PBPRA2346 putative UhpB, Signal transduction histidine kinase, glucose-6-phosphate specificchromosome 1 CDS2703673 1596 - 0.424185
VC0428 PBPRA0387 putative Universal stress protein UspAchromosome 1 CDS388125 447 - 0.395973
VC0514 PBPRA1466 putative methyl-accepting chemotaxis proteinchromosome 1 CDS1658529 1869 - 0.455859
VC2005 PBPRA0180 hypothetical proteinchromosome 1 CDS183686 381 + 0.456693
VCA0176 PBPRA3193 putative methyl-accepting chemotaxis proteinchromosome 1 CDS3624832 1917 + 0.435576
VP0699 PBPRA2984 hypothetical GGDEF domain family proteinchromosome 1 CDS3419581 1560 + 0.40641
VP1147 PBPRA0139 conserved hypothetical proteinchromosome 1 CDS140419 1215 + 0.427984
VP1245 PBPRA1212 putative response regulatorchromosome 1 CDS1360826 1935 - 0.403618
VP1376 PBPRA1211 putative response regulatorchromosome 1 CDS1360315 501 - 0.391218
VP1476 PBPRA0351 hypothetical anti-anti-sigma regulatory factorchromosome 1 CDS351831 312 - 0.358974
VP1483 PBPRA1744 hypothetical sensory box/GGDEF family proteinchromosome 1 CDS1999489 981 + 0.409786
VP1725 PBPRA2518 conserved hypothetical proteinchromosome 1 CDS2913520 1890 - 0.403704
VP1981 PBPRA2018 hypothetical methyl-accepting chemotaxisproteinchromosome 1 CDS2327447 2094 + 0.475167
VP1985 PBPRA2167 conserved hypothetical proteinchromosome 1 CDS2490163 1458 + 0.398491
VP2098 PBPRA1120 hypothetical phosphorelay proteinchromosome 1 CDS1245000 360 + 0.4
VP2183 PBPRA2645 hypothetical response regulatorchromosome 1 CDS3063042 1050 - 0.407619
VP2339 PBPRA1300 Conserved hypothetical proteinchromosome 1 CDS1474129 741 + 0.376518
VP2478 PBPRA0526 hypothetical sensory box sensor histidine kinase/response regulatorchromosome 1 CDS556781 3396 - 0.417256
VP2857 PBPRA0233 Hypothetical periplasmic protein CpxPchromosome 1 CDS239289 483 + 0.449275
VPA1044 PBPRA0657 hypothetical serine/threonine protein kinasechromosome 1 CDS719613 2199 - 0.370623
VPA1449 PBPRA2003 hypothetical Methyl-accepting chemotaxis proteinchromosome 1 CDS2306984 1566 + 0.389527
VPA1449 PBPRA1254 putative methyl-accepting chemotaxis proteinchromosome 1 CDS1419133 1923 - 0.445658
VPA1462 PBPRA1395 putative methyl-accepting chemotaxis proteinchromosome 1 CDS1568708 1629 + 0.411295
VV0691 PBPRA3035 putative response regulatorchromosome 1 CDS3478626 714 + 0.406162
VV10551 PBPRA0544 hypothetical sensory box/GGDEF family proteinchromosome 1 CDS587505 1827 + 0.403394
VV11110 PBPRA3534 hipothetical sensory box/GGDEF family proteinchromosome 1 CDS3994796 3159 - 0.412789
VV11115 PBPRA0125 putative universal stress protein Achromosome 1 CDS127911 423 - 0.404255
VV11139 PBPRA1094 putative signal transduction protein containing EAL and modified HD-GYP domainschromosome 1 CDS1212840 1224 - 0.378268
VV11421 PBPRA1373 hypothetical proteinchromosome 1 CDS1545844 612 - 0.388889
VV11743 PBPRA2131 hypothetical transcription regulatorchromosome 1 CDS2451983 702 - 0.37037
VV12066 PBPRA2404 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS2775863 2004 + 0.423653
VV12158 PBPRA1115 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS1236736 1461 + 0.4141
VV12275 PBPRA1217 Hypothetical sensor histidine kinasechromosome 1 CDS1368798 1326 + 0.424585
VV12583 PBPRA1369 Hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS1538794 1941 - 0.391036
VV12609 PBPRA1839 Putative universal stress protein familychromosome 1 CDS2121600 972 + 0.422839
VV12821 PBPRA1205 conserved hypothetical proteinchromosome 1 CDS1354616 924 - 0.364719
VV20209 PBPRA2770 hypothetical phosphoglycerate transport regulatory protein PgtBchromosome 1 CDS3213772 2361 + 0.387124
VV20401 PBPRA2838 putative methyl-accepting chemotaxis proteinchromosome 1 CDS3285790 1881 + 0.422648
VV20401 PBPRA2839 putative methyl-accepting chemotaxis proteinchromosome 1 CDS3287913 1884 + 0.441083
VV20716 PBPRA1743 hypothetical CheY-like receiver proteinchromosome 1 CDS1998575 918 + 0.392157
VV20992 PBPRA0987 hypothetical two component sensor proteinchromosome 1 CDS1089055 1353 + 0.406504
VV2111 PBPRA2343 conserved hypothetical proteinchromosome 1 CDS2700647 411 - 0.445255
VV21195 PBPRA2145 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS2468130 1686 + 0.413404
VV2690 PBPRA0620 putative c-di-GMP phosphodiesterase A-related proteinchromosome 1 CDS677875 2040 - 0.42451
VV3248 PBPRA2122 putative cyclohexadienyl dehydratase precursor signal peptide proteinchromosome 1 CDS2441287 771 - 0.402075
VVA0018 PBPRA0646 hypothetical proteinchromosome 1 CDS709410 1038 - 0.403661
VVA0366 PBPRA3375 putative methyl-accepting chemotaxis proteinchromosome 1 CDS3814916 1884 + 0.457006
VVA0633 PBPRA1232 Hypothetical sensor protein TorSchromosome 1 CDS1391445 2952 + 0.422087
VVA0728 PBPRA2193 hypothetical methyl-accepting chemotaxis proteinchromosome 1 CDS2521677 1401 + 0.418986
WAVC PBPRA0210 conserved hypothetical proteinchromosome 1 CDS217087 711 + 0.469761
XAC1756 PBPRA0410 conserved hypothetical proteinchromosome 1 CDS415433 1377 + 0.424837
XAC1888 PBPRA0778 Putative CheB, chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domainchromosome 1 CDS859450 1053 + 0.525166
XAC2864 PBPRA0773 Hypothetical proteinchromosome 1 CDS852178 312 + 0.490385
XAC4180 PBPRA3395 putative transcriptional regulator, LuxR familychromosome 1 CDS3841770 807 + 0.417596
Y0067 PBPRA0232 putative transcriptional regulator CpxRchromosome 1 CDS238838 246 - 0.402439
Y0203 PBPRA3287 putative MSHA biogenesis protein MshHchromosome 1 CDS3723342 1944 - 0.409465
Y0811 PBPRA3082 putative GTP pyrophosphokinasechromosome 1 CDS3520367 2232 - 0.43414
Y1293 PBPRA3092 hypothetical proteinchromosome 1 CDS3533422 498 - 0.475904
Y1980 PBPRA2439 putative phage shock protein Achromosome 1 CDS2823875 666 - 0.408408
Y2168 PBPRA2605 putative Ser protein kinasechromosome 1 CDS3017003 1875 + 0.404267
Y2443 PBPRA2238 putative transcriptional regulator, LuxR familychromosome 1 CDS2575806 645 - 0.431008
Y2574 PBPRA1235 Putative RIO1/ZK632.3/MJ0444 family proteinchromosome 1 CDS1398737 858 - 0.440559
Y3803 PBPRA3491 putative virulence regulator BipAchromosome 1 CDS3945496 1845 - 0.445528
Y3916 PBPRA0184 putative transcriptional regulator OmpRchromosome 1 CDS187956 720 + 0.465278
YGEV PBPRA1995 putative transcriptional regulatorchromosome 1 CDS2295444 1758 + 0.399886
YPO0175 PBPRA0293 putative cyclic AMP receptor proteinchromosome 1 CDS310573 633 - 0.43128
YPO0651 PBPRA0442 hypothetical proteinchromosome 1 CDS456896 618 - 0.435275
YPO1576 PBPRA2347 putative response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family)chromosome 1 CDS2705268 696 - 0.442529
YPO2352 PBPRA2440 putative psp operon transcriptional activatorchromosome 1 CDS2824728 1014 + 0.42998
Z0174 PBPRA3188 putative sugar diacid utilization regulatorchromosome 1 CDS3615681 1158 + 0.42228
Z2879 PBPRA1923 conserved hypothetical proteinchromosome 1 CDS2208418 408 - 0.394608
Z3303 PBPRA3027 hypothetical LytS, regulator of cell autolysischromosome 1 CDS3470225 1719 + 0.413031