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2024-05-19 21:01:47

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome I

Number of genes found: 190

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Vibrio cholerae O1 biovar eltor str. N16961, N16961
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VC0010 amino acid ABC transporter, periplasmic amino acid-binding portionchromosome I CDS6354 747 - 0.475234
VC0072 sensory box/GGDEF family proteinchromosome I CDS71512 2307 + 0.501084
VC0076 universal stress protein Achromosome I CDS76210 426 - 0.485915
VC0092 LexA repressorchromosome I CDS90013 630 - 0.526984
VC0098 methyl-accepting chemotaxis proteinchromosome I CDS95592 1980 - 0.516667
VC0130 GGDEF family proteinchromosome I CDS123772 2490 + 0.520884
VC0137 conserved hypothetical proteinchromosome I CDS131313 1299 + 0.487298
VC0216 methyl-accepting chemotaxis proteinchromosome I CDS223454 1695 + 0.504425
VC0227 conserved hypothetical proteinchromosome I CDS231950 756 + 0.46164
VC0282 methyl-accepting chemotaxis proteinchromosome I CDS289352 1671 - 0.513465
VC0300 conserved hypothetical proteinchromosome I CDS307911 1824 - 0.509868
VC0303 sensor histidine kinasechromosome I CDS311277 3444 + 0.519164
VC0398 MSHA biogenesis protein MshHchromosome I CDS423262 2022 + 0.484669
VC0428 conserved hypothetical proteinchromosome I CDS456859 438 - 0.472603
VC0441 bis(5`-nucleosyl)-tetraphosphatasechromosome I CDS470451 810 - 0.508642
VC0449 methyl-accepting chemotaxis proteinchromosome I CDS479294 1626 - 0.50369
VC0512 methyl-accepting chemotaxis proteinchromosome I CDS541319 1590 + 0.436478
VC0514 methyl-accepting chemotaxis proteinchromosome I CDS545174 1881 + 0.352472
VC0515 conserved hypothetical proteinchromosome I CDS547158 1233 + 0.339011
VC0548 carbon storage regulatorchromosome I CDS580589 198 + 0.474747
VC0557 autoinducer-2 production proteinchromosome I CDS591707 519 + 0.485549
VC0596 dnaK suppressor proteinchromosome I CDS623299 447 - 0.47651
VC0622 sensory box sensor histidine kinase/response regulatorchromosome I CDS658234 3534 - 0.47708
VC0653 c-di-GMP phosphodiesterase A-related proteinchromosome I CDS697355 2055 - 0.474939
VC0658 c-di-GMP phosphodiesterase A-related proteinchromosome I CDS701609 2058 - 0.472303
VC0665 sigma-54 dependent transcriptional regulatorchromosome I CDS712395 1335 + 0.486891
VC0672 phosphoenolpyruvate-protein phosphotransferasechromosome I CDS717664 2247 + 0.487316
VC0687 carbon starvation protein A, putativechromosome I CDS733798 1485 - 0.50101
VC0693 response regulatorchromosome I CDS740893 714 - 0.484594
VC0694 conserved hypothetical proteinchromosome I CDS741616 1677 - 0.492546
VC0703 c-di-GMP phosphodiesterase A-related proteinchromosome I CDS751247 2376 - 0.452441
VC0719 DNA-binding response regulator PhoBchromosome I CDS772267 690 + 0.498551
VC0720 histidine protein kinase PhoRchromosome I CDS772978 1302 + 0.513057
VC0790 transcriptional regulator CitBchromosome I CDS845591 684 - 0.479532
VC0791 sensor kinase citAchromosome I CDS846288 1698 - 0.497644
VC0825 toxin co-regulated pilus biosynthesis protein Ichromosome I CDS886543 1863 - 0.381106
VC0826 toxin co-regulated pilus biosynthesis protein Pchromosome I CDS888846 666 + 0.366366
VC0840 accessory colonization factor AcfBchromosome I CDS901494 1881 + 0.342903
VC0900 GGDEF family proteinchromosome I CDS958840 1575 - 0.474921
VC0916 phosphotyrosine protein phosphatasechromosome I CDS978644 501 + 0.413174
VC0961 phoH family proteinchromosome I CDS1025017 1104 - 0.487319
VC1021 LuxO repressor proteinchromosome I CDS1090250 1368 + 0.498538
VC1022 phosphorelay proteinchromosome I CDS1091621 342 + 0.464912
VC1029 GGDEF family proteinchromosome I CDS1095909 975 - 0.475897
VC1041 phosphotyrosine protein phosphatasechromosome I CDS1109436 468 + 0.491453
VC1050 response regulatorchromosome I CDS1120189 1107 + 0.457995
VC1067 conserved hypothetical proteinchromosome I CDS1133235 2082 + 0.45245
VC1070 phosphatase, putativechromosome I CDS1137311 498 + 0.542169
VC1080 hypothetical proteinchromosome I CDS1147494 366 + 0.47541
VC1081 response regulatorchromosome I CDS1147856 1143 + 0.463692
VC1082 response regulatorchromosome I CDS1149033 366 + 0.47541
VC1083 hypothetical proteinchromosome I CDS1149395 585 + 0.442735
VC1084 sensory box sensor histidine kinasechromosome I CDS1149990 1320 + 0.45
VC1085 sensor histidine kinasechromosome I CDS1151321 1305 + 0.4659
VC1086 response regulatorchromosome I CDS1152625 1611 + 0.447548
VC1087 response regulatorchromosome I CDS1154252 1344 + 0.460565
VC1088 sensor histidine kinasechromosome I CDS1155624 1605 - 0.454206
VC1104 GGDEF family proteinchromosome I CDS1173701 1470 + 0.447619
VC1152 hypothetical proteinchromosome I CDS1223698 936 - 0.441239
VC1155 response regulatorchromosome I CDS1226418 546 - 0.474359
VC1156 sensor histidine kinasechromosome I CDS1226912 1296 - 0.465278
VC1157 response regulatorchromosome I CDS1228096 771 - 0.461738
VC1185 GGDEF family proteinchromosome I CDS1259189 1332 + 0.49024
VC1211 conserved hypothetical proteinchromosome I CDS1285750 2115 + 0.452482
VC1213 transcriptional regulator, LuxR familychromosome I CDS1290575 645 + 0.475969
VC1216 GGDEF family proteinchromosome I CDS1294549 1119 + 0.475424
VC1248 methyl-accepting chemotaxis proteinchromosome I CDS1319246 1611 - 0.504035
VC1276 sensor histidine kinasechromosome I CDS1350777 1356 + 0.466077
VC1277 transcriptional regulator, LuxR familychromosome I CDS1352113 651 + 0.473118
VC1289 methyl-accepting chemotaxis proteinchromosome I CDS1366600 1896 + 0.488397
VC1291 conserved hypothetical proteinchromosome I CDS1369341 1914 - 0.476489
VC1295 conserved hypothetical proteinchromosome I CDS1373094 1479 - 0.483435
VC1298 methyl-accepting chemotaxis proteinchromosome I CDS1377542 1632 - 0.462623
VC1313 methyl-accepting chemotaxis proteinchromosome I CDS1395061 1632 - 0.48652
VC1315 sensor histidine kinasechromosome I CDS1398499 1350 + 0.497778
VC1316 chemotaxis protein CheY, putativechromosome I CDS1399817 477 + 0.48847
VC1319 sensor histidine kinasechromosome I CDS1402325 1323 - 0.46712
VC1320 DNA-binding response regulatorchromosome I CDS1403673 705 - 0.470922
VC1348 response regulatorchromosome I CDS1435354 1326 - 0.457014
VC1349 sensory box sensor histidine kinase/response regulatorchromosome I CDS1436615 3996 + 0.462462
VC1353 GGDEF family proteinchromosome I CDS1441840 2931 + 0.479359
VC1362 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome I CDS1451160 1029 - 0.478134
VC1367 GGDEF family proteinchromosome I CDS1456161 2004 - 0.454092
VC1370 GGDEF family proteinchromosome I CDS1459753 1332 + 0.442943
VC1372 GGDEF family proteinchromosome I CDS1462189 1179 + 0.437659
VC1376 GGDEF family proteinchromosome I CDS1469402 1566 + 0.4553
VC1394 methyl-accepting chemotaxis proteinchromosome I CDS1485193 1236 - 0.427184
VC1397 chemotaxis protein CheAchromosome I CDS1487058 2286 - 0.460192
VC1398 chemotaxis protein CheYchromosome I CDS1489340 375 - 0.442667
VC1399 chemotaxis protein methyltransferase CheRchromosome I CDS1489689 867 - 0.407151
VC1401 protein-glutamate methylesterase CheBchromosome I CDS1491209 1077 - 0.487465
VC1402 purine-binding chemotaxis protein Chew, putativechromosome I CDS1492306 1563 - 0.444658
VC1403 methyl-accepting chemotaxis proteinchromosome I CDS1493881 1926 - 0.448079
VC1405 methyl-accepting chemotaxis proteinchromosome I CDS1496302 1788 + 0.447987
VC1406 methyl-accepting chemotaxis proteinchromosome I CDS1498168 1317 + 0.444951
VC1413 methyl-accepting chemotaxis proteinchromosome I CDS1505902 1737 - 0.447323
VC1433 conserved hypothetical proteinchromosome I CDS1530639 948 - 0.46519
VC1434 fumarate and nitrate reduction regulatory proteinchromosome I CDS1531716 753 - 0.432935
VC1445 sensor histidine kinase/response regulatorchromosome I CDS1541452 1719 + 0.38918
VC1497 conserved hypothetical proteinchromosome I CDS1608526 627 - 0.4689
VC1498 conserved hypothetical proteinchromosome I CDS1609253 579 - 0.43696
VC1521 sensor histidine kinasechromosome I CDS1634692 2034 - 0.476401
VC1522 sigma-54 dependent response regulatorchromosome I CDS1636715 1455 - 0.507904
VC1529 hypothetical proteinchromosome I CDS1643549 426 - 0.399061
VC1535 methyl-accepting chemotaxis proteinchromosome I CDS1647373 1593 - 0.487131
VC1592 conserved hypothetical proteinchromosome I CDS1703680 855 + 0.45731
VC1593 GGDEF family proteinchromosome I CDS1704617 1290 + 0.427907
VC1598 ABC transporter, periplasmic substrate-binding protein-related proteinchromosome I CDS1711301 825 + 0.455758
VC1599 GGDEF family proteinchromosome I CDS1712741 1062 + 0.426554
VC1602 chemotaxis protein CheVchromosome I CDS1715544 987 - 0.451874
VC1603 hypothetical proteinchromosome I CDS1716549 777 - 0.435006
VC1604 response regulatorchromosome I CDS1717391 687 - 0.491994
VC1605 sensor kinase citA, putativechromosome I CDS1718077 1617 - 0.485467
VC1638 DNA-binding response regulatorchromosome I CDS1764280 660 + 0.490909
VC1639 sensor histidine kinasechromosome I CDS1764914 1389 + 0.49388
VC1641 conserved hypothetical proteinchromosome I CDS1766888 774 - 0.385013
VC1643 methyl-accepting chemotaxis proteinchromosome I CDS1768345 1791 + 0.47292
VC1651 response regulator VieBchromosome I CDS1779308 1662 - 0.449458
VC1652 response regulator VieAchromosome I CDS1780981 1755 - 0.468946
VC1653 sensory box sensor histidine kinase/response regulator VieSchromosome I CDS1782740 3441 - 0.438245
VC1676 phage shock protein Cchromosome I CDS1811182 417 - 0.520384
VC1678 phage shock protein Achromosome I CDS1811811 669 - 0.467862
VC1679 psp operon transcriptional activatorchromosome I CDS1812689 1017 + 0.504425
VC1710 conserved hypothetical proteinchromosome I CDS1842809 2457 - 0.47619
VC1719 DNA-binding response regulator TorRchromosome I CDS1857523 705 - 0.478014
VC1764 hypothetical proteinchromosome I CDS1903625 2121 - 0.413013
VC1820 PTS system, fructose-specific IIA componentchromosome I CDS1961098 441 + 0.37415
VC1822 PTS system, fructose-specific IIABC componentchromosome I CDS1963028 1866 - 0.495177
VC1824 PTS system, nitrogen regulatory IIA component, putativechromosome I CDS1965418 780 + 0.476923
VC1826 PTS system, fructose-specific IIABC componentchromosome I CDS1967400 1902 + 0.50368
VC1831 sensor histidine kinasechromosome I CDS1971491 2211 - 0.450475
VC1851 conserved hypothetical proteinchromosome I CDS1990171 1215 + 0.436214
VC1859 methyl-accepting chemotaxis proteinchromosome I CDS1997948 2121 - 0.477133
VC1863 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome I CDS2002699 783 - 0.466156
VC1868 methyl-accepting chemotaxis proteinchromosome I CDS2010412 1881 - 0.472621
VC1872 conserved hypothetical proteinchromosome I CDS2014955 1935 + 0.471318
VC1898 methyl-accepting chemotaxis proteinchromosome I CDS2044494 2019 + 0.485389
VC1925 C4-dicarboxylate transport sensor proteinchromosome I CDS2075741 1794 + 0.494426
VC1926 C4-dicarboxylate transport transcriptional regulatory proteinchromosome I CDS2077537 1341 + 0.495153
VC1934 GGDEF family proteinchromosome I CDS2084780 1968 + 0.432419
VC1967 methyl-accepting chemotaxis proteinchromosome I CDS2117923 2055 + 0.438443
VC2006 chemotaxis protein CheVchromosome I CDS2158278 945 - 0.431746
VC2038 hypothetical proteinchromosome I CDS2194664 1215 - 0.46749
VC2059 purine-binding chemotaxis protein CheWchromosome I CDS2214137 525 - 0.459048
VC2062 protein-glutamate methylesterase CheBchromosome I CDS2216465 1134 - 0.4903
VC2063 chemotaxis protein CheAchromosome I CDS2217625 2358 - 0.48855
VC2064 chemotaxis protein CheZchromosome I CDS2219992 720 - 0.452778
VC2065 chemotaxis protein CheYchromosome I CDS2220767 393 - 0.422392
VC2070 phosphohistidine phosphatasechromosome I CDS2226756 474 - 0.493671
VC2135 sigma-54 dependent response regulatorchromosome I CDS2288709 1440 - 0.502778
VC2136 sensory box sensor histidine kinasechromosome I CDS2290145 1056 - 0.508523
VC2137 sigma-54 dependent transcriptional activatorchromosome I CDS2291312 1467 - 0.498978
VC2161 methyl-accepting chemotaxis proteinchromosome I CDS2308741 1872 - 0.482372
VC2201 chemotaxis protein methyltransferase CheRchromosome I CDS2347222 828 - 0.463768
VC2202 chemotaxis protein CheVchromosome I CDS2348060 927 - 0.440129
VC2224 GGDEF family proteinchromosome I CDS2377980 1539 - 0.451592
VC2285 GGDEF family proteinchromosome I CDS2439735 1518 - 0.445982
VC2296 bolA proteinchromosome I CDS2451257 321 - 0.476636
VC2301 transcriptional activator, putativechromosome I CDS2455575 681 - 0.487518
VC2340 conserved hypothetical proteinchromosome I CDS2492237 1155 + 0.458874
VC2368 aerobic respiration control protein FexAchromosome I CDS2524550 717 + 0.475593
VC2369 sensor histidine kinase FexBchromosome I CDS2525325 2358 - 0.469042
VC2370 sensory box/GGDEF family proteinchromosome I CDS2527789 1740 - 0.494253
VC2438 glutamate-ammonia-ligase adenylyltransferasechromosome I CDS2613465 2847 - 0.517387
VC2439 methyl-accepting chemotaxis proteinchromosome I CDS2616435 1302 - 0.500768
VC2443 conserved hypothetical proteinchromosome I CDS2622151 609 + 0.479475
VC2451 GTP pyrophosphokinasechromosome I CDS2630823 2217 - 0.520974
VC2453 sensor histidine kinase/response regulatorchromosome I CDS2634597 2784 + 0.506106
VC2454 GGDEF family proteinchromosome I CDS2637368 1293 - 0.474865
VC2464 sigma-E factor regulatory protein RseCchromosome I CDS2647093 471 - 0.5138
VC2465 sigma-E factor regulatory protein RseBchromosome I CDS2647560 966 - 0.496894
VC2466 sigma-E factor negative regulatory protein RseAchromosome I CDS2648522 639 - 0.496088
VC2497 conserved hypothetical proteinchromosome I CDS2681920 1254 - 0.439394
VC2507 conserved hypothetical proteinchromosome I CDS2696819 1377 + 0.511256
VC2531 PTS system, nitrogen regulatory IIA componentchromosome I CDS2713688 447 + 0.469799
VC2563 hypothetical proteinchromosome I CDS2745547 570 + 0.505263
VC2614 cyclic AMP receptor proteinchromosome I CDS2782257 633 + 0.472354
VC2622 hypothetical proteinchromosome I CDS2793337 774 - 0.483204
VC2691 periplasmic protein cpxP, putativechromosome I CDS2859114 504 - 0.513889
VC2692 transcriptional regulator CpxRchromosome I CDS2859805 687 + 0.515284
VC2693 sensor protein CpxAchromosome I CDS2860491 1395 + 0.511111
VC2697 GGDEF family proteinchromosome I CDS2863775 939 - 0.490948
VC2702 transcriptional regulator, LuxR familychromosome I CDS2873971 630 + 0.5
VC2710 guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolasechromosome I CDS2880976 2118 + 0.524079
VC2713 osmolarity sensor protein EnvZchromosome I CDS2887066 1317 - 0.510251
VC2714 transcriptional regulator OmpR,chromosome I CDS2888451 723 - 0.511757
VC2744 GTP-binding protein TypAchromosome I CDS2916766 1830 - 0.498361
VC2748 nitrogen regulation proteinchromosome I CDS2921393 1065 + 0.488263
VC2749 nitrogen regulation protein NR(I)chromosome I CDS2922461 1407 + 0.486141
VC2750 GGDEF family proteinchromosome I CDS2923908 2550 + 0.459216