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2024-05-14 13:50:31

Gene list

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COG category: Signal transduction mechanisms
Genomic element: chromosome I

Number of genes found: 200

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Vibrio vulnificus YJ016, YJ016
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VV0009 ABC-type amino acid transport system, periplasmic componentchromosome I CDS6385 753 - 0.471448
VV0017 GGDEF family proteinchromosome I CDS14370 2262 - 0.458002
VV0054 conserved hypothetical proteinchromosome I CDS64970 1335 - 0.510861
VV0056 response regulatorchromosome I CDS67355 897 + 0.493868
VV0070 sensory box/GGDEF family proteinchromosome I CDS80872 3147 + 0.502065
VV0075 universal stress protein UspAchromosome I CDS86618 531 - 0.453861
VV0091 GGDEF family proteinchromosome I CDS101773 2490 + 0.513253
VV0098 predicted signal transduction proteinchromosome I CDS109818 1224 + 0.487745
VV0101 predicted protein-tyrosine phosphatasechromosome I CDS112514 510 + 0.564706
VV0123 SOS-response transcriptional repressorchromosome I CDS130780 624 + 0.496795
VV0141 signal transduction histidine kinasechromosome I CDS151234 1797 + 0.378965
VV0174 predicted signal transduction proteinchromosome I CDS184958 828 + 0.455314
VV0195 GGDEF family proteinchromosome I CDS205131 2532 - 0.485387
VV0196 nitrogen regulation proteinchromosome I CDS207781 1410 - 0.515603
VV0197 nitrogen regulation protein NtrBchromosome I CDS209209 1053 - 0.494777
VV0200 GTP-binding protein TypAchromosome I CDS213064 1830 + 0.486339
VV0236 transcriptional regulator OmpRchromosome I CDS243345 732 + 0.5
VV0237 osmolarity sensor protein EnvZchromosome I CDS244169 1299 + 0.518861
VV0241 guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolasechromosome I CDS250232 2040 - 0.514706
VV0284 methyl-accepting chemotaxis proteinchromosome I CDS294941 1722 + 0.483159
VV0297 putative KDO kinase WavCchromosome I CDS305882 711 + 0.459916
VV0331 hypothetical proteinchromosome I CDS340797 438 - 0.479452
VV0339 cytoplasmic phosphatasechromosome I CDS345845 441 + 0.455782
VV0408 cAMP-binding proteinchromosome I CDS401590 564 - 0.453901
VV0446 nitrogen regulatory IIA protein PtsNchromosome I CDS436246 447 - 0.480984
VV0463 conserved hypothetical proteinchromosome I CDS448661 438 - 0.465753
VV0476 bis(5'-nucleosyl)-tetraphosphatasechromosome I CDS460369 810 - 0.47284
VV0497 GGDEF family proteinchromosome I CDS483183 1881 + 0.456672
VV0573 SH3 domain proteinchromosome I CDS555322 612 - 0.473856
VV0580 methyl-accepting chemotaxis proteinchromosome I CDS560817 1257 + 0.498011
VV0581 glutamine synthetase adenylyltransferasechromosome I CDS562179 2853 + 0.500526
VV0643 sensory box/GGDEF family proteinchromosome I CDS637264 1806 + 0.503322
VV0644 signal transduction histidine kinasechromosome I CDS639275 2343 + 0.460948
VV0646 aerobic respiration control protein FexAchromosome I CDS642144 717 - 0.476987
VV0670 sigma-54 dependent transcriptional regulatorchromosome I CDS667503 1350 + 0.465185
VV0676 phosphoenolpyruvate-protein phosphotransferasechromosome I CDS673019 2247 + 0.484646
VV0691 response regulatorchromosome I CDS690374 729 - 0.493827
VV0692 putative regulator of cell autolysischromosome I CDS691122 1683 - 0.480095
VV0693 carbon starvation proteinchromosome I CDS692973 1485 - 0.490909
VV0723 DNA-binding response regulator PhoBchromosome I CDS726823 690 + 0.482609
VV0724 signal transduction histidine kinasechromosome I CDS727533 1299 + 0.473441
VV0772 GGDEF family proteinchromosome I CDS777659 1023 + 0.451613
VV0885 GGDEF family proteinchromosome I CDS886154 1566 - 0.480204
VV0916 phosphate starvation-inducible protein PhoHchromosome I CDS919294 1113 - 0.491464
VV0958 chemotaxis signal transduction proteinchromosome I CDS956995 927 + 0.448759
VV0959 methylase of chemotaxis methyl-accepting proteinchromosome I CDS957935 828 + 0.46256
VV1004 methyl-accepting chemotaxis proteinchromosome I CDS999878 1839 + 0.492115
VV1039 putative transcriptional regulator, AraC/XylS familychromosome I CDS1039349 3453 + 0.453519
VV1064 putative two-component response regulatorchromosome I CDS1065611 669 + 0.475336
VV1065 signal transduction histidine kinasechromosome I CDS1066251 1257 + 0.469372
VV1088 methyl-accepting chemotaxis proteinchromosome I CDS1089515 1635 + 0.500917
VV1090 DNA-binding response regulator GltRchromosome I CDS1092951 729 + 0.504801
VV1091 signal transduction histidine kinasechromosome I CDS1093685 1443 + 0.511434
VV1100 C4-dicarboxylate transport transcriptional regulatory proteinchromosome I CDS1105410 1341 - 0.483221
VV1101 signal transduction histidine kinase regulating C4-dicarboxylate transport systemchromosome I CDS1106752 1818 - 0.482398
VV1140 conserved hypothetical proteinchromosome I CDS1148842 1974 + 0.454914
VV1145 methyl-accepting chemotaxis proteinchromosome I CDS1155539 2037 - 0.477663
VV1157 signal transduction histidine kinasechromosome I CDS1171277 2157 + 0.458971
VV1158 conserved hypothetical proteinchromosome I CDS1173472 915 + 0.465574
VV1168 conserved hypothetical proteinchromosome I CDS1182455 1350 + 0.47037
VV1169 hypothetical proteinchromosome I CDS1183862 1212 + 0.470297
VV1195 luxO repressor proteinchromosome I CDS1211703 1401 + 0.476088
VV1196 phosphorelay proteinchromosome I CDS1213070 381 + 0.467192
VV1233 response regulatorchromosome I CDS1246448 645 + 0.43876
VV1264 protein-tyrosine-phosphatasechromosome I CDS1284265 501 + 0.46507
VV1291 chemotaxis protein CheVchromosome I CDS1312474 942 + 0.44586
VV1359 predicted signal transduction proteinchromosome I CDS1383826 1215 - 0.445267
VV1391 transcriptional regulatorchromosome I CDS1415038 1089 - 0.490358
VV1392 phage shock protein Achromosome I CDS1416306 672 + 0.443452
VV1394 phage shock protein Cchromosome I CDS1417189 420 + 0.457143
VV1402 methyl-accepting chemotaxis proteinchromosome I CDS1428393 1617 + 0.499691
VV1407 transcriptional regulatorchromosome I CDS1434810 1530 - 0.496078
VV1417 GGDEF family proteinchromosome I CDS1442674 1629 + 0.472683
VV1421 signal transduction histidine kinasechromosome I CDS1448220 1446 - 0.490318
VV1422 DNA-binding response regulatorchromosome I CDS1449559 660 - 0.475758
VV1445 predicted signal transduction proteinchromosome I CDS1478877 921 - 0.431053
VV1448 putative response regulatorchromosome I CDS1481827 498 - 0.451807
VV1449 signal transduction histidine kinasechromosome I CDS1482317 1944 - 0.450617
VV1460 GGDEF family proteinchromosome I CDS1495447 1260 + 0.470635
VV1499 conserved hypothetical proteinchromosome I CDS1532749 816 + 0.46201
VV1503 GGDEF family proteinchromosome I CDS1536049 1197 - 0.44528
VV1513 putative response regulatorchromosome I CDS1546917 1239 - 0.45682
VV1514 methyl-accepting chemotaxis proteinchromosome I CDS1548343 1737 - 0.488198
VV1517 putative response regulatorchromosome I CDS1552808 636 + 0.418239
VV1527 conserved hypothetical proteinchromosome I CDS1561964 3129 + 0.486417
VV1538 methyl-accepting chemotaxis proteinchromosome I CDS1578229 1638 - 0.471306
VV1542 GGDEF family proteinchromosome I CDS1582490 1935 - 0.45478
VV1549 methyl-accepting chemotaxis proteinchromosome I CDS1595982 1404 - 0.454416
VV1557 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome I CDS1602981 1128 - 0.468972
VV1568 universal stress proteinchromosome I CDS1612568 372 + 0.430108
VV1603 putative sensor kinase CitAchromosome I CDS1647835 1620 + 0.48642
VV1604 response regulator of citrate/malate metabolismchromosome I CDS1649451 687 + 0.486172
VV1627 putative LuxO repressor proteinchromosome I CDS1671115 1494 - 0.48996
VV1628 signal transduction histidine kinasechromosome I CDS1672765 2289 - 0.487112
VV1633 anti-anti-sigma regulatory factorchromosome I CDS1679554 321 - 0.454829
VV1635 conserved hypothetical proteinchromosome I CDS1681267 1920 + 0.453646
VV1645 GAF domain-containing proteinchromosome I CDS1695595 474 + 0.432489
VV1646 activator of osmoprotectant transporter ProPchromosome I CDS1696132 660 + 0.442424
VV1668 signal transduction histidine kinasechromosome I CDS1722172 1710 - 0.421637
VV1679 fumarate and nitrate reduction regulatory proteinchromosome I CDS1732908 747 + 0.413655
VV1680 putative stress proteinchromosome I CDS1733786 948 + 0.445148
VV1707 methyl-accepting chemotaxis proteinchromosome I CDS1759101 1758 + 0.48521
VV1711 signal transduction histidine kinasechromosome I CDS1766100 2127 - 0.480019
VV1712 sigma-54 dependent response regulatorchromosome I CDS1768123 1506 - 0.488712
VV1722 methyl-accepting chemotaxis proteinchromosome I CDS1777698 2052 - 0.482456
VV1725 GGDEF family proteinchromosome I CDS1780851 963 - 0.440291
VV1726 putative response regulatorchromosome I CDS1781810 1038 - 0.43738
VV1757 hypothetical proteinchromosome I CDS1805053 1362 - 0.400881
VV1972 GGDEF family proteinchromosome I CDS1965025 1116 - 0.458781
VV1984 predicted signal transduction proteinchromosome I CDS1981574 837 + 0.470729
VV2008 Flp pilus assembly protein CpaE-likechromosome I CDS2006145 1137 - 0.511873
VV2022 GGDEF family proteinchromosome I CDS2018028 1548 - 0.468346
VV2030 GGDEF family proteinchromosome I CDS2026902 1323 - 0.445956
VV2051 conserved hypothetical proteinchromosome I CDS2051505 1185 - 0.474262
VV2055 conserved hypothetical proteinchromosome I CDS2055918 747 + 0.483266
VV2057 conserved hypothetical proteinchromosome I CDS2057956 1269 + 0.467297
VV2064 GGDEF family proteinchromosome I CDS2064823 2736 - 0.46674
VV2065 putative HD-GYP domain containing proteinchromosome I CDS2067743 1233 - 0.453366
VV2067 predicted signal transduction proteinchromosome I CDS2070519 1716 + 0.434149
VV2068 GGDEF family proteinchromosome I CDS2072488 1320 + 0.416667
VV2069 putative chemotaxis protein CheYchromosome I CDS2073859 525 - 0.472381
VV2070 signal transduction histidine kinasechromosome I CDS2074304 1356 - 0.485251
VV2081 conserved hypothetical proteinchromosome I CDS2086811 1716 - 0.478438
VV2082 guanylate cyclase-related proteinchromosome I CDS2088519 558 - 0.46595
VV2086 conserved hypothetical proteinchromosome I CDS2093046 1716 + 0.443473
VV2089 methyl-accepting chemotaxis proteinchromosome I CDS2096144 1626 + 0.49508
VV2095 conserved hypothetical proteinchromosome I CDS2102228 1530 + 0.466013
VV2100 predicted signal-transduction proteinchromosome I CDS2106135 1878 + 0.494143
VV2102 methyl-accepting chemotaxis proteinchromosome I CDS2108829 1884 - 0.511146
VV2105 transcriptional regulatorchromosome I CDS2113427 639 - 0.467919
VV2106 signal transduction histidine kinasechromosome I CDS2114058 1356 - 0.468289
VV2127 GGDEF family proteinchromosome I CDS2136183 1548 - 0.450904
VV2146 predicted signal transduction proteinchromosome I CDS2159501 2496 - 0.471554
VV2183 methyl-accepting chemotaxis proteinchromosome I CDS2192869 1641 + 0.488117
VV2200 DNA or RNA helicasechromosome I CDS2204823 2793 + 0.463659
VV2218 conserved hypothetical proteinchromosome I CDS2235864 756 + 0.271164
VV2223 putative tetrathionate reductase complex, sensory transduction histidine kinasechromosome I CDS2242723 1911 + 0.502878
VV2224 putative tetrathionate reductase complex, response regulatorchromosome I CDS2244623 600 + 0.491667
VV2231 methyl-accepting chemotaxis proteinchromosome I CDS2251681 1611 - 0.310366
VV2232 GGDEF family proteinchromosome I CDS2253288 1086 - 0.27256
VV2264 signal transduction histidine kinasechromosome I CDS2282926 2418 - 0.471878
VV2286 methyl-accepting chemotaxis proteinchromosome I CDS2301538 1467 - 0.498296
VV2303 DNA-binding response regulator TorRchromosome I CDS2324798 714 - 0.462185
VV2316 conserved hypothetical proteinchromosome I CDS2337108 249 + 0.39759
VV2333 methyl-accepting chemotaxis proteinchromosome I CDS2355328 2118 - 0.474032
VV2338 amino acid ABC transporter, periplasmic amino acid-binding proteinchromosome I CDS2362932 777 - 0.472329
VV2344 methyl-accepting chemotaxis proteinchromosome I CDS2372272 1881 - 0.469963
VV2349 putative serine protein kinasechromosome I CDS2376846 1935 + 0.455814
VV2352 GGDEF family proteinchromosome I CDS2381673 789 - 0.457541
VV2375 methyl-accepting chemotaxis proteinchromosome I CDS2404646 2013 + 0.483358
VV2380 GGDEF family proteinchromosome I CDS2412163 987 + 0.481256
VV2386 methyl-accepting chemotaxis proteinchromosome I CDS2421091 1872 - 0.491987
VV2388 GGDEF family proteinchromosome I CDS2423847 1065 - 0.446009
VV2405 putative DNA-binding response regulatorchromosome I CDS2435137 801 + 0.47191
VV2406 signal transduction histidine kinasechromosome I CDS2435907 1635 + 0.481346
VV2417 response regulatorchromosome I CDS2444661 1107 - 0.463415
VV2437 phosphohistidine phosphatase SixAchromosome I CDS2469563 465 - 0.494624
VV2457 chemotaxis signal transduction proteinchromosome I CDS2490747 495 - 0.432323
VV2460 chemotaxis response regulator CheBchromosome I CDS2493122 1131 - 0.50221
VV2461 chemotaxis protein histidine kinase CheAchromosome I CDS2494283 2226 - 0.499551
VV2462 chemotaxis protein CheZchromosome I CDS2496518 819 - 0.455433
VV2463 chemotaxis protein CheYchromosome I CDS2497380 393 - 0.424936
VV2483 sigma-54 dependent response regulator FlaMchromosome I CDS2516848 1416 - 0.504943
VV2484 sensory box sensor histidine kinasechromosome I CDS2518290 1035 - 0.477295
VV2485 polar flagellar protein FlaKchromosome I CDS2519447 1464 - 0.463798
VV2579 conserved hypothetical proteinchromosome I CDS2606838 744 - 0.443548
VV2582 response regulatorchromosome I CDS2611008 1251 + 0.446843
VV2591 cell division protein BolAchromosome I CDS2620050 381 - 0.427822
VV2598 putative transcriptional activator ChrRchromosome I CDS2624455 669 - 0.479821
VV2635 methyl-accepting chemotaxis proteinchromosome I CDS2664118 1602 - 0.518727
VV2666 conserved hypothetical proteinchromosome I CDS2699203 729 + 0.432099
VV2671 GGDEF family proteinchromosome I CDS2706216 1623 - 0.433765
VV2684 GGDEF family proteinchromosome I CDS2722759 1089 - 0.469238
VV2685 c-di-GMP phosphodiesterase A-related proteinchromosome I CDS2724134 2064 + 0.454942
VV2690 c-di-GMP phosphodiesterase A-related proteinchromosome I CDS2728453 2040 + 0.468137
VV2733 sensory box sensor histidine kinase/response regulatorchromosome I CDS2773205 3390 + 0.470501
VV2749 sugar diacid utilization regulatorchromosome I CDS2798147 1269 + 0.447597
VV2759 DnaK suppressor proteinchromosome I CDS2813000 447 + 0.46085
VV2792 autoinducer-2 production protein LuxSchromosome I CDS2846033 519 - 0.481696
VV2801 carbon storage regulatorchromosome I CDS2858515 192 - 0.479167
VV2821 GTP pyrophosphokinasechromosome I CDS2878393 2226 - 0.496855
VV2823 signal transduction histidine kinasechromosome I CDS2882203 2787 + 0.502332
VV2824 GGDEF family proteinchromosome I CDS2885092 1272 - 0.457547
VV2835 positive regulator of sigma E activitychromosome I CDS2894830 441 - 0.492063
VV2836 negative regulator of sigma E activitychromosome I CDS2895297 978 - 0.480573
VV2837 negative regulator of sigma E activitychromosome I CDS2896271 621 - 0.491143
VV2887 methyl-accepting chemotaxis proteinchromosome I CDS2938642 1638 + 0.483516
VV2888 methyl-accepting chemotaxis proteinchromosome I CDS2941300 624 + 0.432692
VV2894 putative HD-GYP hydrolase domain containing proteinchromosome I CDS2954669 1257 - 0.419252
VV2926 predicted ATPasechromosome I CDS2987229 1380 + 0.5
VV2952 MSHA biogenesis protein MshHchromosome I CDS3016892 2004 - 0.457086
VV2962 conserved hypothetical proteinchromosome I CDS3034740 1440 - 0.427778
VV3050 cAMP-binding proteinchromosome I CDS3126111 633 + 0.453397
VV3112 putative periplasmic protein CpxPchromosome I CDS3192769 534 - 0.483146
VV3113 transcriptional regulator CpxRchromosome I CDS3193486 684 + 0.49269
VV3114 signal transduction histidine kinasechromosome I CDS3194173 1389 + 0.508999
VV3121 transcriptional regulator, LuxR familychromosome I CDS3202783 648 + 0.49537
VV3131 predicted signal-transduction proteinchromosome I CDS3213225 1848 + 0.505952
VV3140 methyl-accepting chemotaxis proteinchromosome I CDS3223214 1650 + 0.524242
VV3248 putative cyclohexadienyl dehydratase precursor signal peptide proteinchromosome I CDS3339823 924 - 0.453463